Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung05922 Brassica carinata HOM05D005843 ORTHO05D007781 4.8e-288 993.8 508 100.0
A10p33250 Brassica napus HOM05D005843 ORTHO05D007781 1.8e-258 895.6 511 88.3
C03p00940 Brassica napus HOM05D005843 ORTHO05D007781 1.3e-256 889.4 506 89.3
BolC3t12656H Brassica oleracea HOM05D005843 ORTHO05D007781 1.3e-256 889.4 506 89.3
A03p00670 Brassica napus HOM05D005843 ORTHO05D007781 2.2e-256 888.6 509 89.2
BcaB01g06160 Brassica carinata HOM05D005843 ORTHO05D007781 1.2e-254 882.9 506 88.5
BraA03t09456Z Brassica rapa HOM05D005843 ORTHO05D007781 1.3e-253 879.4 519 86.7
BolC9t60149H Brassica oleracea HOM05D005843 ORTHO05D007781 3.0e-253 878.2 511 86.9
BcaNung02129 Brassica carinata HOM05D005843 ORTHO05D007781 5.6e-252 874.0 509 86.8
Sp6g40070 Schrenkiella parvula HOM05D005843 ORTHO05D007781 1.1e-250 869.8 511 87.3
Thhalv10013300m.g Eutrema salsugineum HOM05D005843 ORTHO05D007781 7.3e-244 847.0 511 83.8
Carub.0006s0120 Capsella rubella HOM05D005843 ORTHO05D007781 1.2e-238 829.7 510 81.4
BcaC06g31988 Brassica carinata HOM05D005843 ORTHO05D007781 1.7e-237 825.9 513 82.8
CARHR211000 Cardamine hirsuta HOM05D005843 ORTHO05D007781 2.3e-237 825.5 511 80.8
AL6G11640 Arabidopsis lyrata HOM05D005843 ORTHO05D007781 2.8e-235 818.5 495 83.4
C09p74160 Brassica napus HOM05D005843 ORTHO05D007781 1.4e-234 816.2 486 85.8
AT5G02410 Arabidopsis thaliana HOM05D005843 ORTHO05D007781 4.0e-234 814.7 511 81.0
Aa31LG1G22390 Aethionema arabicum HOM05D005843 ORTHO05D007781 2.8e-219 765.4 579 69.3
THA.LOC104809903 Tarenaya hassleriana HOM05D005843 ORTHO05D007781 6.7e-197 691.0 509 70.1
Atru.chr8.1969 Acer truncatum HOM05D005843 ORTHO05D007781 1.1e-183 647.1 514 63.6
Thecc.05G040300 Theobroma cacao HOM05D005843 ORTHO05D007781 4.1e-178 628.6 515 63.5
GSVIVG01034179001 Vitis vinifera HOM05D005843 ORTHO05D007781 1.7e-176 623.2 519 61.8
Duzib128G1977 Durio zibethinus HOM05D005843 ORTHO05D007781 4.2e-175 618.6 532 61.7
Gohir.A09G156300 Gossypium hirsutum HOM05D005843 ORTHO05D007781 3.6e-174 615.5 518 61.0
Manes.17G047400 Manihot esculenta HOM05D005843 ORTHO05D007781 3.6e-174 615.5 514 61.1
Gorai.006G173000 Gossypium raimondii HOM05D005843 ORTHO05D007781 8.0e-174 614.4 518 61.4
Cpa.g.sc332.7 Carica papaya HOM05D005843 ORTHO05D007781 1.8e-173 613.2 511 62.0
Gohir.D09G151700 Gossypium hirsutum HOM05D005843 ORTHO05D007781 2.3e-173 612.8 518 61.2
Haze_20785 Corylus avellana HOM05D005843 ORTHO05D007781 2.0e-172 609.8 528 61.0
QL06p005681 Quercus lobata HOM05D005843 ORTHO05D007781 4.4e-172 608.6 514 61.9
TWI38G1602 Tripterygium wilfordii HOM05D005843 ORTHO05D007781 4.4e-172 608.6 517 60.0
CiPaw.09G192200 Carya illinoinensis HOM05D005843 ORTHO05D007781 5.7e-172 608.2 516 60.3
Hma1.2p1_1513F.1_g288040 Hydrangea macrophylla HOM05D005843 ORTHO05D007781 5.7e-172 608.2 515 60.2
TAR633G1568 Trochodendron aralioides HOM05D005843 ORTHO05D007781 1.4e-170 603.6 517 60.3
Oeu024347.1 Olea europaea HOM05D005843 ORTHO05D007781 9.1e-170 600.9 515 58.4
ECA238G1173 Erigeron canadensis HOM05D005843 ORTHO05D007781 1.2e-169 600.5 512 57.6
Ca_26026_v3 Cicer arietinum L. HOM05D005843 ORTHO05D007781 2.0e-169 599.7 510 59.8
Eucgr.K03141 Eucalyptus grandis HOM05D005843 ORTHO05D007781 4.5e-169 598.6 512 59.0
Sc20g0004950 Simmondsia chinensis HOM05D005843 ORTHO05D007781 5.9e-169 598.2 514 58.6
Lj3C968G10 Lonicera japonica HOM05D005843 ORTHO05D007781 1.3e-168 597.0 556 56.8
Medtr7g060680 Medicago truncatula HOM05D005843 ORTHO05D007781 1.3e-168 597.0 515 59.6
MELO3C003129.2 Cucumis melo HOM05D005843 ORTHO05D007781 1.7e-168 596.7 517 59.6
PSO339G2649 Papaver somniferum HOM05D005843 ORTHO05D007781 2.9e-168 595.9 516 59.9
PSO151G0180 Papaver somniferum HOM05D005843 ORTHO05D007781 3.8e-168 595.5 518 59.5
TPR.G23290 Trifolium pratense HOM05D005843 ORTHO05D007781 3.8e-168 595.5 511 59.7
RcHm_v2.0_Chr3g0466751 Rosa chinensis HOM05D005843 ORTHO05D007781 5.0e-168 595.1 516 60.5
DCAR_014847 Daucus carota HOM05D005843 ORTHO05D007781 1.5e-167 593.6 515 57.7
FAN14G2296 Fragaria x ananassa HOM05D005843 ORTHO05D007781 1.2e-166 590.5 515 59.8
MD12G1140900 Malus domestica HOM05D005843 ORTHO05D007781 2.7e-166 589.3 514 59.5
Prupe.6G254200 Prunus persica HOM05D005843 ORTHO05D007781 2.7e-166 589.3 518 61.6
FAN05G5617 Fragaria x ananassa HOM05D005843 ORTHO05D007781 6.1e-166 588.2 515 59.2
Glyma.07G131100 Glycine max HOM05D005843 ORTHO05D007781 6.1e-166 588.2 514 58.0
Rhsim05G0192300 Rhododendron simsii HOM05D005843 ORTHO05D007781 1.8e-165 586.6 512 58.4
Cc06_g02690 Coffea canephora HOM05D005843 ORTHO05D007781 2.3e-165 586.3 513 57.7
CsaV3_4G024980 Cucumis sativus L. HOM05D005843 ORTHO05D007781 4.0e-165 585.5 517 59.0
Lalb_Chr19g0125371 Lupinus albus HOM05D005843 ORTHO05D007781 2.0e-164 583.2 514 58.0
PGR004G0455 Punica granatum HOM05D005843 ORTHO05D007781 3.3e-164 582.4 513 58.5
QL11p021821 Quercus lobata HOM05D005843 ORTHO05D007781 9.7e-164 580.9 555 54.8
Nitab4.5_0001190g0070 Nicotiana tabacum HOM05D005843 ORTHO05D007781 1.7e-163 580.1 514 57.8
Nn8g39667 Nelumbo nucifera HOM05D005843 ORTHO05D007781 2.2e-163 579.7 517 57.8
Hund24578 Selenicereus undatus HOM05D005843 ORTHO05D007781 4.8e-163 578.6 514 57.8
EL10Ac3g07255 Beta vulgaris HOM05D005843 ORTHO05D007781 7.0e-162 574.7 517 58.0
Psat5g101400 Pisum sativum HOM05D005843 ORTHO05D007781 7.0e-162 574.7 514 57.8
arahy.Tifrunner.gnm1.ann1.JAB43P Arachis hypogaea HOM05D005843 ORTHO05D007781 9.1e-162 574.3 515 58.4
CAN.G326.14 Capsicum annuum HOM05D005843 ORTHO05D007781 1.2e-161 573.9 516 56.8
Sopen09g005490 Solanum pennellii HOM05D005843 ORTHO05D007781 1.2e-161 573.9 514 56.2
CANSAT35G1785 Cannabis sativa HOM05D005843 ORTHO05D007781 1.6e-161 573.5 532 58.1
PGSC0003DMG400008911 Solanum tuberosum HOM05D005843 ORTHO05D007781 3.5e-161 572.4 514 56.6
VMungo1383G2898 Vigna mungo HOM05D005843 ORTHO05D007781 2.2e-160 569.7 515 58.1
ClCG04G008190 Citrullus lanatus HOM05D005843 ORTHO05D007781 2.9e-160 569.3 514 58.4
MD04G1127500 Malus domestica HOM05D005843 ORTHO05D007781 5.0e-160 568.5 515 58.3
Migut.J00332 Erythranthe guttata HOM05D005843 ORTHO05D007781 5.5e-159 565.1 516 57.2
Phvul.008G100900 Phaseolus vulgaris HOM05D005843 ORTHO05D007781 3.6e-158 562.4 511 57.5
SalBow3G1829 Salvia bowleyana HOM05D005843 ORTHO05D007781 3.6e-158 562.4 513 55.6
Aqoxy6G01388 Aquilegia oxysepala HOM05D005843 ORTHO05D007781 8.0e-158 561.2 517 56.5
Sed0019468 Sechium edule HOM05D005843 ORTHO05D007781 8.0e-158 561.2 491 59.7
HanXRQChr16g0515781 Helianthus annuus HOM05D005843 ORTHO05D007781 1.8e-157 560.1 494 56.7
Solyc09g010770.3 Solanum lycopersicum HOM05D005843 ORTHO05D007781 2.0e-156 556.6 509 56.0
Peaxi162Scf00165g01322 Petunia axillaris HOM05D005843 ORTHO05D007781 2.6e-156 556.2 551 53.7
Lsat_1_v5_gn_2_17401 Lactuca sativa HOM05D005843 ORTHO05D007781 8.3e-155 551.2 503 54.7
SGA_v2.0_scaffold75G24948 Striga asiatica HOM05D005843 ORTHO05D007781 1.3e-152 543.9 513 55.0
FAN09G3893 Fragaria x ananassa HOM05D005843 ORTHO05D007781 1.1e-151 540.8 525 55.6
FAN02G2362 Fragaria x ananassa HOM05D005843 ORTHO05D007781 1.9e-151 540.0 546 54.8
HPP92_000805 Vanilla planifolia HOM05D005843 ORTHO05D007781 1.6e-150 537.0 515 54.0
CSS0035027 Camellia sinensis var. sinensis HOM05D005843 ORTHO05D007781 3.0e-149 532.7 462 61.0
Hma1.2p1_1513F.1_g288030 Hydrangea macrophylla HOM05D005843 ORTHO05D007781 8.9e-149 531.2 463 59.6
AUR62030297 Chenopodium quinoa HOM05D005843 ORTHO05D007781 9.2e-146 521.2 594 49.7
Actinidia26464 Actinidia chinensis HOM05D005843 ORTHO05D000250 9.5e-143 511.1 441 61.2
Glyma.18G179500 Glycine max HOM05D005843 ORTHO05D007781 1.6e-142 510.4 510 53.7
Dinv35609 Davidia involucrata HOM05D005843 ORTHO05D007781 1.5e-140 503.8 429 60.6
SHI00339 Sapria himalayana HOM05D005843 ORTHO05D007781 3.4e-140 502.7 537 50.3
BcaNung05921 Brassica carinata HOM05D002515 ORTHO05D002722 1.0e-136 491.1 370 75.1
Sabra06G0064400 Salix brachista HOM05D005843 ORTHO05D007781 3.9e-136 489.2 536 52.2
Lj3g0024665 Lotus japonicus HOM05D005843 ORTHO05D007781 2.4e-130 469.9 455 54.9
unitig_26.g9195 Utricularia gibba HOM05D005843 ORTHO05D007781 2.7e-129 466.5 461 54.4
AUR62015928 Chenopodium quinoa HOM05D005843 ORTHO05D007781 4.6e-129 465.7 509 49.9
Pp3c4_12410 Physcomitrium patens HOM05D005843 ORTHO05D007781 1.9e-122 443.7 523 46.1
Os04g0503700 Oryza sativa ssp. japonica HOM05D005843 ORTHO05D007781 1.0e-120 438.0 470 48.7
BcaC06g31987 Brassica carinata HOM05D005843 ORTHO05D007781 1.7e-120 437.2 319 75.5
arahy.Tifrunner.gnm1.ann1.HAEF8J Arachis hypogaea HOM05D005843 ORTHO05D007781 9.3e-114 414.8 389 56.8
FvH4_6g13910 Fragaria vesca HOM05D005843 ORTHO05D007781 3.3e-111 406.4 378 58.2
SMO137G0039 Selaginella moellendorffii HOM05D005843 ORTHO05D007781 7.6e-108 395.2 522 43.7
Dinv37176 Davidia involucrata HOM05D005843 ORTHO05D007781 2.6e-100 370.2 342 55.8
Mapoly0047s0019 Marchantia polymorpha HOM05D005843 ORTHO05D007781 2.2e-99 367.1 529 42.0
A03p00710 Brassica napus HOM05D005843 ORTHO05D007781 1.0e-96 358.2 196 91.8
AUR62018365 Chenopodium quinoa HOM05D005843 ORTHO05D007781 1.3e-91 341.3 380 51.3
ATR0585G056 Amborella trichopoda HOM05D005843 ORTHO05D007781 3.9e-88 329.7 392 46.9
vmacro20152 Vaccinium macrocarpon HOM05D005843 ORTHO05D007781 1.3e-86 324.7 440 45.0
Potri.006G084800 Populus trichocarpa HOM05D005843 ORTHO05D007781 2.0e-84 317.4 329 54.4
CDE09G0345 Ceratophyllum demersum HOM05D005843 ORTHO05D007781 6.5e-83 312.4 461 42.3
Zm00001eb078080 Zea mays HOM05D005843 ORTHO05D007781 3.7e-78 296.6 343 45.8
Nitab4.5_0002018g0090 Nicotiana tabacum HOM05D005843 ORTHO05D007781 3.6e-73 280.0 262 56.9
AagrBONN_evm.TU.Sc2ySwM_117.1914 Anthoceros agrestis HOM05D005843 ORTHO05D007781 1.3e-70 271.6 452 37.4
SGA_v2.0_scaffold75G24944 Striga asiatica HOM05D005843 ORTHO05D007781 2.8e-62 243.8 425 38.1
CBR_g29861 Chara braunii HOM05D005843 ORTHO05D000002 3.8e-59 233.4 359 39.0
Cre01.g041300 Chlamydomonas reinhardtii HOM05D005843 ORTHO05D007781 3.8e-51 206.8 532 30.6
TAR636G2087 Trochodendron aralioides HOM05D005843 ORTHO05D007781 7.2e-50 202.6 173 57.8
VMungo1309G2290 Vigna mungo HOM05D005843 ORTHO05D007781 1.4e-40 171.8 135 63.7
DCAR_015734 Daucus carota HOM05D005843 ORTHO05D007781 2.2e-38 164.5 136 58.1
TAR636G1000 Trochodendron aralioides HOM05D005843 ORTHO05D007781 3.5e-36 157.1 126 61.1
TAR636G1324 Trochodendron aralioides HOM05D005843 ORTHO05D007781 3.5e-36 157.1 126 61.1
Haze_26583 Corylus avellana HOM05D005843 ORTHO05D007781 9.5e-34 149.1 511 28.8
C03p92170 Brassica napus HOM05D005843 ORTHO05D040940 2.3e-27 127.9 67 92.5
BolC3t21533H Brassica oleracea HOM05D005843 ORTHO05D040940 2.3e-27 127.9 67 92.5
BraA10t45356Z Brassica rapa HOM05D005843 ORTHO05D007781 2.9e-27 127.5 65 86.2
AUR62040681 Chenopodium quinoa HOM05D005843 ORTHO05D007781 6.6e-27 126.3 200 38.5
DCAR_015735 Daucus carota HOM05D005843 ORTHO05D007781 2.4e-21 107.8 60 80.0
SEGI_06123 Sequoiadendron giganteum HOM05D005843 ORTHO05D007781 4.6e-20 103.6 116 44.8
TAR636G3605 Trochodendron aralioides HOM05D005843 ORTHO05D007781 1.9e-18 98.2 91 52.7
Hma1.2p1_1611F.1_g293520 Hydrangea macrophylla HOM05D005843 ORTHO05D007781 1.2e-17 95.5 52 78.8
SEGI_08652 Sequoiadendron giganteum HOM05D005843 ORTHO05D000001 3.1e-16 90.9 57 64.9
VMungo1309G1664 Vigna mungo HOM05D005843 ORTHO05D007781 2.6e-15 87.8 218 32.1
TAR636G0893 Trochodendron aralioides HOM05D005843 ORTHO05D007781 7.1e-13 79.7 64 60.9
SEGI_16582 Sequoiadendron giganteum HOM05D005843 ORTHO05D014789 8.1e-09 66.2 74 47.3


User provided reference genes

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