Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung05906 Brassica carinata HOM05D004306 ORTHO05D005055 1.9e-264 915.2 440 100.0
BolC1t00152H Brassica oleracea HOM05D004306 ORTHO05D005055 7.7e-258 893.3 455 94.9
C01p01570 Brassica napus HOM05D004306 ORTHO05D005055 1.0e-257 892.9 455 95.2
A01p01390 Brassica napus HOM05D004306 ORTHO05D005055 1.8e-254 882.1 452 94.0
BraA01t00135Z Brassica rapa HOM05D004306 ORTHO05D005055 1.8e-254 882.1 452 94.0
AL7G13200 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 8.8e-246 853.2 452 90.5
Carub.0007s0271 Capsella rubella HOM05D004306 ORTHO05D005055 7.5e-245 850.1 452 89.6
Thhalv10025178m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 3.1e-243 844.7 452 88.9
Sp7g35240 Schrenkiella parvula HOM05D004306 ORTHO05D005055 1.2e-242 842.8 452 88.9
AL7G13210 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 5.9e-242 840.5 452 88.5
AT4G37560 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 8.5e-241 836.6 452 88.9
CARHR245960 Cardamine hirsuta HOM05D004306 ORTHO05D005055 8.5e-241 836.6 452 88.1
AT4G37550 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 5.2e-238 827.4 452 86.9
Aa31LG6G14430 Aethionema arabicum HOM05D004306 ORTHO05D005055 7.5e-237 823.5 452 86.3
BcaNung05905 Brassica carinata HOM05D004306 ORTHO05D005055 7.5e-237 823.5 444 88.5
Thhalv10025180m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 9.8e-237 823.2 452 86.5
CARHR245950 Cardamine hirsuta HOM05D004306 ORTHO05D005055 2.8e-236 821.6 452 86.7
Sp7g35230 Schrenkiella parvula HOM05D004306 ORTHO05D005055 4.8e-236 820.8 449 86.6
BolC1t00153H Brassica oleracea HOM05D004306 ORTHO05D005055 1.9e-232 808.9 452 84.7
BcaNung05904 Brassica carinata HOM05D004306 ORTHO05D005055 4.2e-232 807.7 452 84.7
C01p01580 Brassica napus HOM05D004306 ORTHO05D005055 4.2e-232 807.7 452 84.7
Prupe.6G223000 Prunus persica HOM05D004306 ORTHO05D005055 4.2e-232 807.7 452 83.4
BraA01t00136Z Brassica rapa HOM05D004306 ORTHO05D005055 1.0e-230 803.1 452 84.7
A01p01400 Brassica napus HOM05D004306 ORTHO05D005055 4.0e-230 801.2 452 84.3
Cfa004112 Carpinus fangiana HOM05D004306 ORTHO05D005055 2.0e-229 798.9 452 83.0
GSVIVG01000140001 Vitis vinifera HOM05D004306 ORTHO05D005055 4.4e-229 797.7 451 82.7
FAN23G0931 Fragaria x ananassa HOM05D004306 ORTHO05D005055 5.7e-229 797.3 452 82.7
FAN28G1176 Fragaria x ananassa HOM05D004306 ORTHO05D005055 2.2e-228 795.4 451 82.5
AUR62003989 Chenopodium quinoa HOM05D004306 ORTHO05D005055 8.3e-228 793.5 452 82.1
FAN26G3311 Fragaria x ananassa HOM05D004306 ORTHO05D005055 1.1e-227 793.1 452 82.1
Lsat_1_v5_gn_2_82860 Lactuca sativa HOM05D004306 ORTHO05D005055 4.1e-227 791.2 451 82.0
THA.LOC104819873 Tarenaya hassleriana HOM05D004306 ORTHO05D005055 1.2e-226 789.6 486 79.6
CSS0001342 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 1.6e-226 789.3 451 81.6
Glyma.17G161900 Glycine max HOM05D004306 ORTHO05D005055 3.5e-226 788.1 452 82.7
Oeu014230.2 Olea europaea HOM05D004306 ORTHO05D005055 3.5e-226 788.1 452 81.0
FAN19G2263 Fragaria x ananassa HOM05D004306 ORTHO05D005055 5.9e-226 787.3 462 80.7
TAR628G0028 Trochodendron aralioides HOM05D004306 ORTHO05D005055 7.8e-226 786.9 452 81.0
Manes.12G110500 Manihot esculenta HOM05D004306 ORTHO05D005055 1.3e-225 786.2 452 81.2
Ciclev10025794m.g Citrus clementina HOM05D004306 ORTHO05D005055 1.7e-225 785.8 450 82.0
PGR102G2907 Punica granatum HOM05D004306 ORTHO05D005055 3.8e-225 784.6 451 81.8
Dinv26913 Davidia involucrata HOM05D004306 ORTHO05D005055 1.1e-224 783.1 450 81.8
Oeu040626.2 Olea europaea HOM05D004306 ORTHO05D005055 2.5e-224 781.9 452 81.0
GSVIVG01000137001 Vitis vinifera HOM05D004306 ORTHO05D005055 2.5e-224 781.9 451 82.0
Gorai.007G222100 Gossypium raimondii HOM05D004306 ORTHO05D005055 4.3e-224 781.2 451 81.6
Nn1g04599 Nelumbo nucifera HOM05D004306 ORTHO05D005055 9.5e-224 780.0 452 80.1
Lj4A160T62 Lonicera japonica HOM05D004306 ORTHO05D005055 1.2e-223 779.6 451 80.9
Rhsim10G0101200 Rhododendron simsii HOM05D004306 ORTHO05D005055 1.2e-223 779.6 452 81.2
ClCG01G017440 Citrullus lanatus HOM05D004306 ORTHO05D005055 1.6e-223 779.2 452 80.1
Peaxi162Scf00264g00117 Petunia axillaris HOM05D004306 ORTHO05D005055 4.7e-223 777.7 452 79.9
Sed0025668 Sechium edule HOM05D004306 ORTHO05D005055 8.0e-223 776.9 452 79.9
Nitab4.5_0000651g0100 Nicotiana tabacum HOM05D004306 ORTHO05D005055 1.0e-222 776.5 449 80.2
GSVIVG01000135001 Vitis vinifera HOM05D004306 ORTHO05D005055 1.0e-222 776.5 450 80.9
PGSC0003DMG400024965 Solanum tuberosum HOM05D004306 ORTHO05D005055 1.5e-221 772.7 449 80.4
Cpa.g.sc6.39 Carica papaya HOM05D004306 ORTHO05D005055 7.5e-221 770.4 442 81.9
EL10Ac6g15639 Beta vulgaris HOM05D004306 ORTHO05D005055 9.8e-221 770.0 452 80.8
AUR62040257 Chenopodium quinoa HOM05D004306 ORTHO05D005055 9.8e-221 770.0 446 81.4
Solyc02g092530.4 Solanum lycopersicum HOM05D004306 ORTHO05D005055 2.2e-220 768.8 448 80.1
TWI09G0703 Tripterygium wilfordii HOM05D004306 ORTHO05D005055 2.2e-220 768.8 452 79.6
Atru.chr3.158 Acer truncatum HOM05D004306 ORTHO05D005055 2.9e-220 768.5 447 81.4
Atru.chr3.187 Acer truncatum HOM05D004306 ORTHO05D005055 2.9e-220 768.5 447 81.4
CsaV3_6G043980 Cucumis sativus L. HOM05D004306 ORTHO05D005055 2.9e-220 768.5 446 80.5
MD15G1294800 Malus domestica HOM05D004306 ORTHO05D005055 2.9e-220 768.5 452 80.5
Actinidia11991 Actinidia chinensis HOM05D004306 ORTHO05D005055 3.7e-220 768.1 452 79.9
Cc07_g06920 Coffea canephora HOM05D004306 ORTHO05D005055 4.9e-220 767.7 451 79.6
Duzib264G0002 Durio zibethinus HOM05D004306 ORTHO05D005055 6.4e-220 767.3 444 80.9
Haze_15301 Corylus avellana HOM05D004306 ORTHO05D005055 1.1e-219 766.5 429 84.4
Lj4g0006645 Lotus japonicus HOM05D004306 ORTHO05D005055 2.4e-219 765.4 451 80.0
Phvul.003G236000 Phaseolus vulgaris HOM05D004306 ORTHO05D005055 2.4e-219 765.4 451 80.3
Thecc.01G070200 Theobroma cacao HOM05D004306 ORTHO05D005055 3.2e-219 765.0 450 80.0
CiPaw.02G003700 Carya illinoinensis HOM05D004306 ORTHO05D005055 4.1e-219 764.6 452 80.1
FvH4_1g17390 Fragaria vesca HOM05D004306 ORTHO05D005055 4.1e-219 764.6 446 80.5
arahy.Tifrunner.gnm1.ann1.GV60EB Arachis hypogaea HOM05D004306 ORTHO05D005055 4.6e-218 761.1 451 80.3
VMungo0251G0785 Vigna mungo HOM05D004306 ORTHO05D005055 7.8e-218 760.4 452 79.6
Gohir.A11G216400 Gossypium hirsutum HOM05D004306 ORTHO05D005055 1.7e-217 759.2 451 79.8
MSTRG.15357 Avicennia marina HOM05D004306 ORTHO05D005055 2.3e-217 758.8 452 79.0
SGA_v2.0_scaffold21G09395 Striga asiatica HOM05D004306 ORTHO05D005055 3.9e-217 758.1 451 78.7
Gohir.D11G207000 Gossypium hirsutum HOM05D004306 ORTHO05D005055 5.0e-217 757.7 451 79.8
TPR.G23896 Trifolium pratense HOM05D004306 ORTHO05D005055 5.0e-217 757.7 452 79.4
PSO541G4466 Papaver somniferum HOM05D004306 ORTHO05D005055 8.6e-217 756.9 447 79.4
CANSAT01G0675 Cannabis sativa HOM05D004306 ORTHO05D005055 1.9e-216 755.7 455 79.3
CDE04G2054 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 1.9e-216 755.7 454 79.1
Eucgr.H02295 Eucalyptus grandis HOM05D004306 ORTHO05D005055 3.3e-216 755.0 451 79.4
Potri.005G145400 Populus trichocarpa HOM05D004306 ORTHO05D005055 5.6e-216 754.2 444 80.2
ECA238G2426 Erigeron canadensis HOM05D004306 ORTHO05D005055 7.3e-216 753.8 451 78.7
Sopen02g037110 Solanum pennellii HOM05D004306 ORTHO05D005055 7.3e-216 753.8 440 79.8
Duzib187G0102 Durio zibethinus HOM05D004306 ORTHO05D005055 1.6e-215 752.7 450 78.4
Medtr4g095660 Medicago truncatula HOM05D004306 ORTHO05D005055 6.2e-215 750.7 452 79.0
Lalb_Chr16g0389191 Lupinus albus HOM05D004306 ORTHO05D005055 1.1e-214 750.0 451 79.2
SalBow5G1134 Salvia bowleyana HOM05D004306 ORTHO05D005055 2.3e-214 748.8 452 77.7
CAN.G1075.22 Capsicum annuum HOM05D004306 ORTHO05D005055 3.1e-214 748.4 443 79.7
Ca_13922_v3 Cicer arietinum L. HOM05D004306 ORTHO05D005055 3.1e-214 748.4 446 78.9
SalBow5G1710 Salvia bowleyana HOM05D004306 ORTHO05D005055 4.0e-214 748.0 452 77.7
Hund13938 Selenicereus undatus HOM05D004306 ORTHO05D005055 5.2e-214 747.7 469 76.1
Aqoxy6G02701 Aquilegia oxysepala HOM05D004306 ORTHO05D005055 6.8e-214 747.3 452 77.9
Nitab4.5_0006069g0040 Nicotiana tabacum HOM05D004306 ORTHO05D005055 8.9e-214 746.9 433 79.9
HanXRQChr14g0449471 Helianthus annuus HOM05D004306 ORTHO05D005055 2.0e-213 745.7 451 79.2
Sabra05G0116200 Salix brachista HOM05D004306 ORTHO05D005055 2.6e-213 745.3 496 72.8
MBI16_g09132_MAGBIO Magnolia biondii HOM05D004306 ORTHO05D005055 7.5e-213 743.8 448 78.1
Zm00001eb370290 Zea mays HOM05D004306 ORTHO05D005055 3.5e-210 734.9 455 75.4
Migut.L00204 Erythranthe guttata HOM05D004306 ORTHO05D005055 1.0e-209 733.4 446 78.3
vmacro05397 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 2.3e-209 732.3 447 78.3
Lj4g0023143 Lotus japonicus HOM05D004306 ORTHO05D005055 3.0e-209 731.9 446 76.9
Os01g0764900 Oryza sativa ssp. japonica HOM05D004306 ORTHO05D005055 1.9e-208 729.2 451 75.4
MELO3C007621.2 Cucumis melo HOM05D004306 ORTHO05D005055 5.6e-208 727.6 412 82.8
RcHm_v2.0_Chr2g0107581 Rosa chinensis HOM05D004306 ORTHO05D005055 5.6e-208 727.6 446 78.0
Hma1.2p1_0730F.1_g209845 Hydrangea macrophylla HOM05D004306 ORTHO05D005055 1.9e-203 712.6 447 76.3
unitig_748.g8394 Utricularia gibba HOM05D004306 ORTHO05D005055 5.4e-203 711.1 451 74.9
DCAR_025786 Daucus carota HOM05D004306 ORTHO05D005055 2.8e-199 698.7 452 74.3
SMO141G0231 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 3.5e-194 681.8 446 71.3
Cre16.g691750 Chlamydomonas reinhardtii HOM05D004306 ORTHO05D005055 6.0e-194 681.0 448 72.8
Ah.02g125510 Amaranthus hybridus HOM05D004306 ORTHO05D005055 5.8e-189 664.5 456 71.5
HPP92_014148 Vanilla planifolia HOM05D004306 ORTHO05D005055 9.3e-187 657.1 388 79.1
CSS0047878 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 4.6e-186 654.8 446 71.3
Pp3c3_32950 Physcomitrium patens HOM05D004306 ORTHO05D005055 6.6e-185 651.0 452 69.2
Psat0ss839g0200 Pisum sativum HOM05D004306 ORTHO05D005055 1.5e-184 649.8 379 81.5
Cfa004110 Carpinus fangiana HOM05D004306 ORTHO05D005055 2.4e-182 642.5 463 69.3
ATR0019G017 Amborella trichopoda HOM05D004306 ORTHO05D005055 1.7e-180 636.3 377 78.0
CSS0039286 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 8.2e-167 590.9 432 68.1
CSS0041574 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 5.1e-161 571.6 455 64.6
Sc16g0000120 Simmondsia chinensis HOM05D004306 ORTHO05D005055 6.9e-158 561.2 334 80.8
HPP92_014166 Vanilla planifolia HOM05D004306 ORTHO05D005055 1.3e-151 540.4 434 64.1
COL.COLO4_11552 Corchorus olitorius HOM05D004306 ORTHO05D005055 5.3e-142 508.4 451 58.8
Zm00001eb152190 Zea mays HOM05D004306 ORTHO05D005055 3.2e-139 499.2 316 73.4
Sc16g0000140 Simmondsia chinensis HOM05D004306 ORTHO05D005055 2.7e-138 496.1 295 81.4
arahy.Tifrunner.gnm1.ann1.HR4B5C Arachis hypogaea HOM05D004306 ORTHO05D005055 2.3e-137 493.0 298 80.2
Oeu013288.2 Olea europaea HOM05D004306 ORTHO05D005055 2.7e-130 469.5 434 57.6
DCAR_025787 Daucus carota HOM05D004306 ORTHO05D005055 2.3e-129 466.5 288 75.0
SMO170G0023 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 1.3e-119 434.1 379 58.0
SEGI_32720 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 4.7e-114 415.6 295 67.1
ATR0019G021 Amborella trichopoda HOM05D004306 ORTHO05D005055 2.0e-101 373.6 286 63.6
MD00G1015700 Malus domestica HOM05D004306 ORTHO05D005055 7.1e-86 322.0 200 72.5
DCAR_000330 Daucus carota HOM05D004306 ORTHO05D005055 6.2e-74 282.3 161 81.4
arahy.Tifrunner.gnm1.ann1.ZW9ABU Arachis hypogaea HOM05D004306 ORTHO05D005055 1.7e-71 274.2 153 79.7
Sc16g0000130 Simmondsia chinensis HOM05D004306 ORTHO05D005055 6.0e-69 265.8 153 73.2
EL10Ac1g01850 Beta vulgaris HOM05D004306 ORTHO05D005055 1.6e-66 257.7 147 79.6
MD00G1015600 Malus domestica HOM05D004306 ORTHO05D005055 2.0e-64 250.8 197 66.5
SEGI_23023 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 2.9e-63 246.9 148 75.0
SEGI_13173 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 7.1e-62 242.3 156 71.2
SEGI_27901 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 1.6e-61 241.1 147 76.9
Cfa025028 Carpinus fangiana HOM05D004306 ORTHO05D005055 9.6e-59 231.9 271 46.5
EL10Ac5g12500 Beta vulgaris HOM05D004306 ORTHO05D005055 2.1e-53 214.2 140 74.3
RcHm_v2.0_Chr2g0107621 Rosa chinensis HOM05D004306 ORTHO05D005055 9.6e-51 205.3 138 69.6
TPR.G23871 Trifolium pratense HOM05D004306 ORTHO05D005055 2.3e-44 184.1 111 81.1
CDE07G1667 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 1.9e-43 181.0 117 67.5
COL.COLO4_11551 Corchorus olitorius HOM05D004306 ORTHO05D005055 1.4e-41 174.9 135 68.1
EL10Ac4g09102 Beta vulgaris HOM05D004306 ORTHO05D005055 7.2e-38 162.5 132 59.8
ATR0515G001 Amborella trichopoda HOM05D004306 ORTHO05D005055 4.5e-24 116.7 55 94.5
Cfa004111 Carpinus fangiana HOM05D004306 ORTHO05D005055 4.2e-22 110.2 78 65.4
AUR62003988 Chenopodium quinoa HOM05D004306 ORTHO05D005055 7.2e-22 109.4 66 74.2
vmacro05396 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 3.0e-20 104.0 74 63.5
FAN28G1106 Fragaria x ananassa HOM05D004306 ORTHO05D005055 9.7e-19 99.0 68 63.2
SGA_v2.0_scaffold21G09394 Striga asiatica HOM05D004306 ORTHO05D005055 4.8e-18 96.7 66 65.2
Psat5g012000 Pisum sativum HOM05D004306 ORTHO05D005055 8.2e-18 95.9 80 53.8
Lj4C160G10 Lonicera japonica HOM05D004306 ORTHO05D005055 7.0e-17 92.8 72 59.7
Dinv30076 Davidia involucrata HOM05D004306 ORTHO05D005055 2.7e-16 90.9 80 53.8
SEGI_03818 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 2.9e-15 87.4 67 61.2
Nitab4.5_0000032g0200 Nicotiana tabacum HOM05D004306 ORTHO05D005055 5.0e-15 86.7 50 78.0
Cc07_g06910 Coffea canephora HOM05D004306 ORTHO05D005055 1.0e-12 79.0 49 69.4
Eucgr.H02294 Eucalyptus grandis HOM05D004306 ORTHO05D005055 3.4e-11 73.9 65 53.8
EL10Ac4g09101 Beta vulgaris HOM05D004306 ORTHO05D005055 1.7e-10 71.6 41 75.6
Thecc.01G069900 Theobroma cacao HOM05D004306 ORTHO05D005055 1.4e-09 68.6 36 83.3


User provided reference genes

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