Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung05898 Brassica carinata HOM05D004099 ORTHO05D004777 1.0e-112 410.2 229 100.0
Sp2g22560 Schrenkiella parvula HOM05D004099 ORTHO05D004777 1.0e-83 313.9 231 77.1
Thhalv10004845m.g Eutrema salsugineum HOM05D004099 ORTHO05D004777 2.1e-81 306.2 236 79.2
BcaC03g17940 Brassica carinata HOM05D004099 ORTHO05D004777 8.8e-80 300.8 217 77.0
C02p60010 Brassica napus HOM05D004099 ORTHO05D004777 8.8e-80 300.8 217 77.0
BolC2t12055H Brassica oleracea HOM05D004099 ORTHO05D004777 3.3e-79 298.9 217 76.5
C07p42870 Brassica napus HOM05D004099 ORTHO05D004777 7.4e-79 297.7 224 80.4
BolC7t44814H Brassica oleracea HOM05D004099 ORTHO05D004777 7.4e-79 297.7 224 80.4
A06p35670 Brassica napus HOM05D004099 ORTHO05D004777 4.1e-77 292.0 232 79.3
BraA02t08969Z Brassica rapa HOM05D004099 ORTHO05D004777 5.3e-77 291.6 217 75.1
BraA06t26492Z Brassica rapa HOM05D004099 ORTHO05D004777 1.5e-76 290.0 222 78.8
A02p40050 Brassica napus HOM05D004099 ORTHO05D004777 5.5e-74 281.6 217 73.7
BcaB04g19804 Brassica carinata HOM05D004099 ORTHO05D004777 2.7e-73 279.3 226 73.0
BcaB04g19805 Brassica carinata HOM05D004099 ORTHO05D004777 2.7e-73 279.3 226 73.0
C09p07050 Brassica napus HOM05D004099 ORTHO05D004777 6.7e-72 274.6 229 75.5
BcaC04g23565 Brassica carinata HOM05D004099 ORTHO05D004777 8.8e-72 274.2 232 74.6
BolC9t53621H Brassica oleracea HOM05D004099 ORTHO05D004777 8.8e-72 274.2 232 74.6
BcaB07g29925 Brassica carinata HOM05D004099 ORTHO05D004777 2.0e-71 273.1 218 73.9
A09p06360 Brassica napus HOM05D004099 ORTHO05D004777 2.4e-69 266.2 230 73.0
BraA09t36281Z Brassica rapa HOM05D004099 ORTHO05D004777 7.7e-68 261.2 230 72.2
AT5G24890 Arabidopsis thaliana HOM05D004099 ORTHO05D004777 3.0e-64 249.2 240 67.5
CARHR188560 Cardamine hirsuta HOM05D004099 ORTHO05D004777 8.8e-64 247.7 246 65.9
Aa31LG11G4090 Aethionema arabicum HOM05D004099 ORTHO05D004777 5.7e-63 245.0 239 62.3
Carub.0006s2274 Capsella rubella HOM05D004099 ORTHO05D004777 1.7e-59 233.4 255 65.5
THA.LOC104814974 Tarenaya hassleriana HOM05D004099 ORTHO05D004777 6.8e-56 221.5 231 62.3
THA.LOC104803325 Tarenaya hassleriana HOM05D004099 ORTHO05D004777 2.8e-49 199.5 227 56.4
AL6G36570 Arabidopsis lyrata HOM05D004099 ORTHO05D004777 5.2e-40 168.7 139 73.4
BNapus_Darmor_BZH_scaffold_241p00090 Brassica napus HOM05D004099 ORTHO05D004777 5.0e-35 152.1 171 57.3
Gohir.A05G063600 Gossypium hirsutum HOM05D004099 ORTHO05D004777 4.1e-29 132.5 229 46.3
Sabra06G0211400 Salix brachista HOM05D004099 ORTHO05D004777 1.7e-27 127.1 240 42.5
Duzib168G0203 Durio zibethinus HOM05D004099 ORTHO05D004777 1.9e-26 123.6 238 46.6
Gorai.009G067000 Gossypium raimondii HOM05D004099 ORTHO05D004777 1.9e-26 123.6 226 45.6
Thecc.09G008200 Theobroma cacao HOM05D004099 ORTHO05D004777 1.9e-26 123.6 231 45.5
Gohir.D05G066200 Gossypium hirsutum HOM05D004099 ORTHO05D004777 3.3e-26 122.9 227 45.4
Gohir.D06G107300 Gossypium hirsutum HOM05D004099 ORTHO05D004777 7.3e-26 121.7 169 50.9
Gohir.A06G105200 Gossypium hirsutum HOM05D004099 ORTHO05D004777 9.5e-26 121.3 169 50.3
Gorai.010G122000 Gossypium raimondii HOM05D004099 ORTHO05D004777 1.6e-25 120.6 169 50.3
Medtr3g108910 Medicago truncatula HOM05D004099 ORTHO05D004777 1.6e-25 120.6 129 52.7
MELO3C003623.2 Cucumis melo HOM05D004099 ORTHO05D004777 8.1e-25 118.2 230 41.3
arahy.Tifrunner.gnm1.ann1.HHIB1Q Arachis hypogaea HOM05D004099 ORTHO05D004777 1.1e-24 117.9 214 42.1
Potri.018G008200 Populus trichocarpa HOM05D004099 ORTHO05D004777 1.4e-24 117.5 234 42.7
Sabra18G0015300 Salix brachista HOM05D004099 ORTHO05D004777 1.4e-24 117.5 141 49.6
arahy.Tifrunner.gnm1.ann1.4Y0EX5 Arachis hypogaea HOM05D004099 ORTHO05D004777 3.1e-24 116.3 214 42.5
CsaV3_2G031340 Cucumis sativus L. HOM05D004099 ORTHO05D004777 8.9e-24 114.8 114 57.9
Phvul.001G059700 Phaseolus vulgaris HOM05D004099 ORTHO05D004777 8.9e-24 114.8 178 45.5
MELO3C011183.2 Cucumis melo HOM05D004099 ORTHO05D004777 1.2e-23 114.4 114 57.9
Duzib150G0962 Durio zibethinus HOM05D004099 ORTHO05D004777 1.5e-23 114.0 225 43.6
Psat0s1810g0040 Pisum sativum HOM05D004099 ORTHO05D004777 1.5e-23 114.0 173 47.4
THA.LOC104819932 Tarenaya hassleriana HOM05D004099 ORTHO05D004777 1.5e-23 114.0 174 46.6
VMungo1309G2218 Vigna mungo HOM05D004099 ORTHO05D004777 2.6e-23 113.2 118 56.8
Psat6g032840 Pisum sativum HOM05D004099 ORTHO05D004777 5.8e-23 112.1 140 50.7
TPR.G34393 Trifolium pratense HOM05D004099 ORTHO05D004777 5.8e-23 112.1 112 57.1
Ca_15654_v3 Cicer arietinum L. HOM05D004099 ORTHO05D004777 7.6e-23 111.7 256 39.1
Ca_15662_v3 Cicer arietinum L. HOM05D004099 ORTHO05D004777 7.6e-23 111.7 256 39.1
TPR.G11970 Trifolium pratense HOM05D004099 ORTHO05D004777 9.9e-23 111.3 130 53.1
ClCG05G026470 Citrullus lanatus HOM05D004099 ORTHO05D004777 1.3e-22 110.9 172 47.1
CANSAT25G3311 Cannabis sativa HOM05D004099 ORTHO05D004777 2.9e-22 109.8 180 43.3
Lj1g0009765 Lotus japonicus HOM05D004099 ORTHO05D004777 2.9e-22 109.8 172 45.9
Atru.chr7.2654 Acer truncatum HOM05D004099 ORTHO05D004777 4.9e-22 109.0 161 49.1
VMungo0647G0898 Vigna mungo HOM05D004099 ORTHO05D004777 4.9e-22 109.0 84 65.5
arahy.Tifrunner.gnm1.ann1.EP35YN Arachis hypogaea HOM05D004099 ORTHO05D004777 6.4e-22 108.6 170 44.7
Glyma.17G197700 Glycine max HOM05D004099 ORTHO05D004777 6.4e-22 108.6 193 42.5
Lalb_Chr11g0064161 Lupinus albus HOM05D004099 ORTHO05D004777 6.4e-22 108.6 117 55.6
Medtr1g009640 Medicago truncatula HOM05D004099 ORTHO05D004777 6.4e-22 108.6 122 55.7
ClCG08G012630 Citrullus lanatus HOM05D004099 ORTHO05D004777 1.9e-21 107.1 177 47.5
Sed0004011 Sechium edule HOM05D004099 ORTHO05D004777 1.9e-21 107.1 181 47.5
Lalb_Chr23g0269151 Lupinus albus HOM05D004099 ORTHO05D004777 2.4e-21 106.7 116 50.9
arahy.Tifrunner.gnm1.ann1.DC2GX7 Arachis hypogaea HOM05D004099 ORTHO05D004777 4.1e-21 105.9 167 45.5
Phvul.009G101800 Phaseolus vulgaris HOM05D004099 ORTHO05D004777 4.1e-21 105.9 114 54.4
THA.LOC104803870 Tarenaya hassleriana HOM05D004099 ORTHO05D004777 4.1e-21 105.9 231 38.5
AL4G15100 Arabidopsis lyrata HOM05D004099 ORTHO05D004777 2.1e-20 103.6 133 53.4
CsaV3_3G047130 Cucumis sativus L. HOM05D004099 ORTHO05D004777 2.1e-20 103.6 226 39.8
CARHR117460 Cardamine hirsuta HOM05D004099 ORTHO05D004777 2.7e-20 103.2 134 52.2
Cpa.g.sc23.25 Carica papaya HOM05D004099 ORTHO05D004777 3.5e-20 102.8 248 39.9
Medtr1g045430 Medicago truncatula HOM05D004099 ORTHO05D004777 3.5e-20 102.8 123 51.2
MD15G1107100 Malus domestica HOM05D004099 ORTHO05D004777 4.6e-20 102.4 246 39.8
GSVIVG01035514001 Vitis vinifera HOM05D000139 ORTHO05D003082 1.0e-19 101.3 129 45.7
AT2G24550 Arabidopsis thaliana HOM05D004099 ORTHO05D004777 1.3e-19 100.9 135 48.9
Lalb_Chr22g0361221 Lupinus albus HOM05D004099 ORTHO05D004777 1.7e-19 100.5 146 50.7
Prupe.1G459400 Prunus persica HOM05D004099 ORTHO05D004777 3.0e-19 99.8 199 42.2
Manes.03G004500 Manihot esculenta HOM05D004099 ORTHO05D004777 5.1e-19 99.0 183 42.6
BraA04t17493Z Brassica rapa HOM05D004099 ORTHO05D004777 1.1e-18 97.8 140 47.9
Potri.006G273100 Populus trichocarpa HOM05D004099 ORTHO05D004777 1.5e-18 97.4 149 46.3
A04p18910 Brassica napus HOM05D004099 ORTHO05D004777 1.9e-18 97.1 142 46.5
BcaB06g27983 Brassica carinata HOM05D004099 ORTHO05D004777 2.5e-18 96.7 141 46.1
BcaC02g08443 Brassica carinata HOM05D004099 ORTHO05D004777 2.5e-18 96.7 141 46.1
C04p54150 Brassica napus HOM05D004099 ORTHO05D004777 2.5e-18 96.7 141 46.1
BolC4t26967H Brassica oleracea HOM05D004099 ORTHO05D004777 2.5e-18 96.7 141 46.1
Glyma.06G077200 Glycine max HOM05D004099 ORTHO05D004777 2.5e-18 96.7 115 52.2
PSO170G2883 Papaver somniferum HOM05D004099 ORTHO05D004777 3.3e-18 96.3 112 52.7
Glyma.04G076000 Glycine max HOM05D004099 ORTHO05D004777 4.3e-18 95.9 87 58.6
PSO063G2706 Papaver somniferum HOM05D004099 ORTHO05D004777 5.6e-18 95.5 112 52.7
Aa31LG7G12320 Aethionema arabicum HOM05D004099 ORTHO05D004777 7.3e-18 95.1 138 50.0
Carub.0004s0391 Capsella rubella HOM05D004099 ORTHO05D004777 9.6e-18 94.7 138 50.0
PGR044G2369 Punica granatum HOM05D004099 ORTHO05D004777 9.6e-18 94.7 138 47.1
AL7G20550 Arabidopsis lyrata HOM05D004099 ORTHO05D004777 1.2e-17 94.4 134 47.0
Ciclev10009036m.g Citrus clementina HOM05D004099 ORTHO05D004777 1.2e-17 94.4 133 49.6
Manes.16G135100 Manihot esculenta HOM05D004099 ORTHO05D004777 1.2e-17 94.4 165 44.8
RcHm_v2.0_Chr6g0305061 Rosa chinensis HOM05D004099 ORTHO05D004777 1.6e-17 94.0 235 40.0
Sed0009150 Sechium edule HOM05D004099 ORTHO05D004777 1.6e-17 94.0 86 57.0
BcaB06g27984 Brassica carinata HOM05D004099 ORTHO05D004777 2.8e-17 93.2 140 47.1
QL12p025350 Quercus lobata HOM05D004099 ORTHO05D004777 3.6e-17 92.8 253 37.2
Actinidia06428 Actinidia chinensis HOM05D004099 ORTHO05D004777 4.7e-17 92.4 124 50.0
FAN20G2786 Fragaria x ananassa HOM05D004099 ORTHO05D004777 4.7e-17 92.4 174 42.0
Actinidia22257 Actinidia chinensis HOM05D004099 ORTHO05D004777 6.2e-17 92.0 158 43.0
A09p56190 Brassica napus HOM05D004099 ORTHO05D004777 6.2e-17 92.0 190 42.1
BraA09t41015Z Brassica rapa HOM05D004099 ORTHO05D004777 8.1e-17 91.7 190 42.1
BcaC07g40919 Brassica carinata HOM05D004099 ORTHO05D004777 1.1e-16 91.3 181 42.0
C08p39160 Brassica napus HOM05D004099 ORTHO05D004777 1.1e-16 91.3 181 42.0
BolC8t51489H Brassica oleracea HOM05D004099 ORTHO05D004777 1.1e-16 91.3 181 42.0
FAN27G1673 Fragaria x ananassa HOM05D004099 ORTHO05D004777 1.1e-16 91.3 173 41.6
BcaC07g40920 Brassica carinata HOM05D004099 ORTHO05D004777 1.8e-16 90.5 163 42.3
FvH4_2g36700 Fragaria vesca HOM05D004099 ORTHO05D004777 2.4e-16 90.1 174 44.8
FAN15G2474 Fragaria x ananassa HOM05D004099 ORTHO05D004777 3.1e-16 89.7 173 41.0
Thhalv10000300m.g Eutrema salsugineum HOM05D004099 ORTHO05D004777 1.2e-15 87.8 190 41.1
CARHR239380 Cardamine hirsuta HOM05D004099 ORTHO05D004777 4.4e-15 85.9 85 60.0
Sc06g0000180 Simmondsia chinensis HOM05D004099 ORTHO05D004777 4.4e-15 85.9 167 43.1
AT4G31510 Arabidopsis thaliana HOM05D004099 ORTHO05D004777 5.8e-15 85.5 142 41.5
BcaB03g12702 Brassica carinata HOM05D004099 ORTHO05D004777 7.6e-15 85.1 141 46.1
CiPaw.07G211800 Carya illinoinensis HOM05D004099 ORTHO05D004777 7.6e-15 85.1 243 37.0
Thhalv10029499m.g Eutrema salsugineum HOM05D004099 ORTHO05D004777 1.3e-14 84.3 189 42.9
Sp4g03550 Schrenkiella parvula HOM05D004099 ORTHO05D004777 1.7e-14 84.0 254 37.8
BolC7t46319H Brassica oleracea HOM05D004099 ORTHO05D004777 2.2e-14 83.6 136 47.1
Thhalv10026165m.g Eutrema salsugineum HOM05D004099 ORTHO05D004777 2.2e-14 83.6 142 45.1
TWI34G1482 Tripterygium wilfordii HOM05D004099 ORTHO05D004777 2.9e-14 83.2 233 34.3
BcaNung04134 Brassica carinata HOM05D004099 ORTHO05D004777 3.8e-14 82.8 136 46.3
TWI63G1022 Tripterygium wilfordii HOM05D004099 ORTHO05D004777 6.4e-14 82.0 230 37.0
GSVIVG01012477001 Vitis vinifera HOM05D004099 ORTHO05D004777 6.4e-14 82.0 102 46.1
BcaNung04135 Brassica carinata HOM05D004099 ORTHO05D004777 1.4e-13 80.9 143 45.5
C07p58690 Brassica napus HOM05D004099 ORTHO05D004777 1.4e-13 80.9 143 45.5
Aa31LG2G18840 Aethionema arabicum HOM05D004099 ORTHO05D004777 2.4e-13 80.1 162 45.7
BraA08t33820Z Brassica rapa HOM05D004099 ORTHO05D004777 2.4e-13 80.1 187 39.0
Sp7g29350 Schrenkiella parvula HOM05D004099 ORTHO05D004777 3.2e-13 79.7 178 43.3
A08p18580 Brassica napus HOM05D004099 ORTHO05D004777 4.2e-13 79.3 188 38.3
A03p60800 Brassica napus HOM05D004099 ORTHO05D004777 5.4e-13 79.0 123 48.0
BraA03t15116Z Brassica rapa HOM05D004099 ORTHO05D004777 5.4e-13 79.0 123 48.0
MD08G1127700 Malus domestica HOM05D004099 ORTHO05D004777 5.4e-13 79.0 238 37.0
Carub.0007s0905 Capsella rubella HOM05D004099 ORTHO05D004777 7.1e-13 78.6 99 54.5
C03p87870 Brassica napus HOM05D004099 ORTHO05D004777 3.5e-12 76.3 187 38.0
BolC3t21102H Brassica oleracea HOM05D004099 ORTHO05D004777 3.5e-12 76.3 187 38.0
Nitab4.5_0000502g0140 Nicotiana tabacum HOM05D004099 ORTHO05D004777 1.3e-11 74.3 104 48.1
CSS0016285 Camellia sinensis var. sinensis HOM05D004099 ORTHO05D004777 1.7e-11 73.9 133 39.1
Peaxi162Scf00288g00911 Petunia axillaris HOM05D004099 ORTHO05D004777 1.7e-11 73.9 150 36.7
BcaC01g01082 Brassica carinata HOM05D004099 ORTHO05D004777 2.3e-11 73.6 187 39.6
Solyc08g068970.3 Solanum lycopersicum HOM05D004099 ORTHO05D004777 2.3e-11 73.6 119 42.9
CiPaw.08G020400 Carya illinoinensis HOM05D004099 ORTHO05D004777 3.9e-11 72.8 151 38.4
Sopen08g022630 Solanum pennellii HOM05D004099 ORTHO05D004777 6.6e-11 72.0 132 40.9
PGSC0003DMG400035805 Solanum tuberosum HOM05D004099 ORTHO05D004777 1.5e-10 70.9 140 40.7
MBI16_g09343_MAGBIO Magnolia biondii HOM05D002359 ORTHO05D002394 2.5e-10 70.1 115 43.5
Ah.12g061250 Amaranthus hybridus HOM05D004099 ORTHO05D004777 6.2e-09 65.5 138 37.7
EL10Ac2g02414 Beta vulgaris HOM05D004099 ORTHO05D004777 2.4e-08 63.5 134 38.8
Peaxi162Scf00288g00109 Petunia axillaris HOM05D004099 ORTHO05D004777 2.4e-08 63.5 111 45.9
HPP92_010298 Vanilla planifolia HOM05D002359 ORTHO05D002394 5.3e-08 62.4 174 36.2
Oeu018566.1 Olea europaea HOM05D004099 ORTHO05D004777 6.9e-08 62.0 94 46.8
HPP92_010785 Vanilla planifolia HOM05D004099 ORTHO05D004777 6.9e-08 62.0 178 39.3
ATR0580G260 Amborella trichopoda HOM05D002359 ORTHO05D002394 9.0e-08 61.6 151 40.4
Zm00001eb035860 Zea mays HOM05D002359 ORTHO05D002394 9.0e-08 61.6 58 56.9
HPP92_017131 Vanilla planifolia HOM05D004099 ORTHO05D004777 1.5e-07 60.8 172 34.9
Zm00001eb174750 Zea mays HOM05D002359 ORTHO05D002394 1.5e-07 60.8 168 38.1
Haze_07997 Corylus avellana HOM05D004099 ORTHO05D004777 2.6e-07 60.1 69 46.4
Haze_07991 Corylus avellana HOM05D004099 ORTHO05D004777 4.4e-07 59.3 69 46.4
HPP92_015829 Vanilla planifolia HOM05D002359 ORTHO05D002394 9.9e-07 58.2 98 49.0
SalBow5G0949 Salvia bowleyana HOM05D002019 ORTHO05D002150 2.2e-06 57.0 62 50.0
BcaNung04136 Brassica carinata HOM05D004099 ORTHO05D004777 6.4e-06 55.5 95 52.6
Os09g0499000 Oryza sativa ssp. japonica HOM05D002359 ORTHO05D002394 6.4e-06 55.5 71 46.5
CiPaw.04G143200 Carya illinoinensis HOM05D002359 ORTHO05D002394 8.4e-06 55.1 118 41.5


User provided reference genes

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