Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung05887 Brassica carinata HOM05D003503 ORTHO05D003885 5.9e-84 314.3 175 100.0
BcaC02g12471 Brassica carinata HOM05D003503 ORTHO05D003885 1.4e-82 309.7 175 98.9
C04p03390 Brassica napus HOM05D003503 ORTHO05D003885 1.4e-82 309.7 175 98.9
BolC4t21976H Brassica oleracea HOM05D003503 ORTHO05D003885 3.7e-78 295.0 176 96.0
A05p02800 Brassica napus HOM05D003503 ORTHO05D003885 3.1e-77 292.0 176 94.3
BraA05t19272Z Brassica rapa HOM05D003503 ORTHO05D003885 3.1e-77 292.0 176 94.3
Carub.0004s2460 Capsella rubella HOM05D003503 ORTHO05D003885 1.4e-64 250.0 201 72.6
Thhalv10017150m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 3.9e-64 248.4 202 71.8
Sp4g24440 Schrenkiella parvula HOM05D003503 ORTHO05D003885 5.2e-64 248.1 201 72.1
AT2G42260 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 8.8e-64 247.3 201 71.1
CARHR137300 Cardamine hirsuta HOM05D003503 ORTHO05D003885 5.7e-63 244.6 174 80.5
BcaNung04400 Brassica carinata HOM05D003503 ORTHO05D003885 1.8e-56 223.0 179 74.9
Aa31LG1G24010 Aethionema arabicum HOM05D003503 ORTHO05D003885 3.4e-55 218.8 199 64.3
THA.LOC104802399 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 6.5e-51 204.5 194 66.0
Carub.0005s2470 Capsella rubella HOM05D003503 ORTHO05D003885 2.2e-46 189.5 197 58.9
AL5G39520 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 3.7e-46 188.7 180 62.2
AL4G40620 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 4.1e-45 185.3 118 86.4
Thhalv10006194m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 9.1e-45 184.1 158 65.2
AT3G57860 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 5.9e-44 181.4 180 61.7
THA.LOC104824461 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 2.9e-43 179.1 196 60.2
C08p33430 Brassica napus HOM05D003503 ORTHO05D003885 3.8e-43 178.7 158 65.2
Aa31LG10G12570 Aethionema arabicum HOM05D003503 ORTHO05D003885 1.9e-42 176.4 154 67.5
BcaC07g40334 Brassica carinata HOM05D003503 ORTHO05D003885 9.5e-42 174.1 158 64.6
A09p50720 Brassica napus HOM05D003503 ORTHO05D003885 2.8e-41 172.6 158 62.7
BcaC07g40160 Brassica carinata HOM05D003503 ORTHO05D003885 3.6e-41 172.2 156 62.8
BcaC07g40221 Brassica carinata HOM05D003503 ORTHO05D003885 1.0e-40 170.6 157 64.3
Sp5g04860 Schrenkiella parvula HOM05D003503 ORTHO05D003885 1.8e-40 169.9 157 62.4
CARHR168170 Cardamine hirsuta HOM05D003503 ORTHO05D003885 5.7e-39 164.9 158 60.8
Ciclev10005700m.g Citrus clementina HOM05D003503 ORTHO05D003885 7.5e-39 164.5 159 62.9
QL07p023685 Quercus lobata HOM05D003503 ORTHO05D003885 2.2e-38 162.9 157 61.8
CiPaw.10G029000 Carya illinoinensis HOM05D003503 ORTHO05D003885 2.9e-38 162.5 159 62.3
CSS0007658 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 1.1e-37 160.6 152 58.6
Manes.03G008800 Manihot esculenta HOM05D003503 ORTHO05D003885 1.8e-37 159.8 158 60.8
Atru.chr1.937 Acer truncatum HOM05D003503 ORTHO05D003885 2.4e-37 159.5 184 56.0
Actinidia20299 Actinidia chinensis HOM05D003503 ORTHO05D003885 2.4e-37 159.5 159 59.1
Actinidia17255 Actinidia chinensis HOM05D003503 ORTHO05D003885 1.6e-36 156.8 159 59.1
Actinidia38570 Actinidia chinensis HOM05D003503 ORTHO05D003885 1.6e-36 156.8 201 49.3
Gorai.007G361800 Gossypium raimondii HOM05D003503 ORTHO05D003885 3.5e-36 155.6 193 52.3
Nitab4.5_0010571g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 1.3e-35 153.7 152 59.9
FvH4_6g18600 Fragaria vesca HOM05D003503 ORTHO05D003885 1.7e-35 153.3 151 57.6
FAN14G4545 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.7e-35 153.3 151 57.6
TWI74G1092 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 1.7e-35 153.3 158 58.2
Thecc.05G166300 Theobroma cacao HOM05D003503 ORTHO05D003885 2.3e-35 152.9 157 59.2
Gohir.A11G313900 Gossypium hirsutum HOM05D003503 ORTHO05D003885 3.9e-35 152.1 193 51.8
Gohir.D11G331100 Gossypium hirsutum HOM05D003503 ORTHO05D003885 3.9e-35 152.1 193 51.3
GSVIVG01033358001 Vitis vinifera HOM05D003503 ORTHO05D003885 3.9e-35 152.1 159 56.6
CSS0013310 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 5.0e-35 151.8 180 52.8
Nitab4.5_0000016g0070 Nicotiana tabacum HOM05D003503 ORTHO05D003885 6.6e-35 151.4 151 58.9
Duzib106G0586 Durio zibethinus HOM05D003503 ORTHO05D003885 1.5e-34 150.2 157 58.6
Eucgr.A02419 Eucalyptus grandis HOM05D003503 ORTHO05D003885 1.5e-34 150.2 154 58.4
FAN05G1437 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.5e-34 150.2 152 56.6
FAN05G4212 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.5e-34 150.2 152 56.6
Prupe.7G071700 Prunus persica HOM05D003503 ORTHO05D003885 2.5e-34 149.4 157 57.3
Rhsim04G0098700 Rhododendron simsii HOM05D003503 ORTHO05D003885 2.5e-34 149.4 174 52.3
QL07p023657 Quercus lobata HOM05D003503 ORTHO05D003885 4.3e-34 148.7 176 52.8
FAN02G2343 Fragaria x ananassa HOM05D003503 ORTHO05D003885 5.6e-34 148.3 152 55.9
PGR004G1207 Punica granatum HOM05D003503 ORTHO05D003885 7.3e-34 147.9 160 54.4
Hma1.2p1_0640F.1_g194090 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 9.5e-34 147.5 153 58.8
RcHm_v2.0_Chr3g0473161 Rosa chinensis HOM05D003503 ORTHO05D003885 9.5e-34 147.5 153 57.5
Hma1.2p1_0174F.1_g077040 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 1.6e-33 146.7 159 56.6
Manes.16G129700 Manihot esculenta HOM05D003503 ORTHO05D003885 1.6e-33 146.7 158 55.1
Dinv18112 Davidia involucrata HOM05D003503 ORTHO05D003885 3.6e-33 145.6 156 58.3
Sabra06G0041000 Salix brachista HOM05D003503 ORTHO05D003885 6.2e-33 144.8 158 57.6
FAN09G1919 Fragaria x ananassa HOM05D003503 ORTHO05D003885 8.0e-33 144.4 152 55.3
Cfa016885 Carpinus fangiana HOM05D003503 ORTHO05D003885 1.4e-32 143.7 159 57.2
FvH4_1g24920 Fragaria vesca HOM05D003503 ORTHO05D003885 1.4e-32 143.7 153 56.9
FAN23G1753 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.4e-32 143.7 153 56.9
FAN23G2494 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.4e-32 143.7 153 56.9
Nitab4.5_0004063g0080 Nicotiana tabacum HOM05D003503 ORTHO05D003885 1.4e-32 143.7 158 56.3
RcHm_v2.0_Chr3g0473181 Rosa chinensis HOM05D003503 ORTHO05D003885 1.4e-32 143.7 153 56.2
TAR369G0624 Trochodendron aralioides HOM05D003503 ORTHO05D001307 1.4e-32 143.7 159 56.0
Duzib128G0723 Durio zibethinus HOM05D003503 ORTHO05D003885 1.8e-32 143.3 156 55.8
MD12G1062400 Malus domestica HOM05D003503 ORTHO05D003885 1.8e-32 143.3 157 52.9
FAN26G0276 Fragaria x ananassa HOM05D003503 ORTHO05D003885 3.1e-32 142.5 153 56.2
FAN26G0411 Fragaria x ananassa HOM05D003503 ORTHO05D003885 3.1e-32 142.5 153 56.2
CANSAT80G0280 Cannabis sativa HOM05D003503 ORTHO05D003885 4.0e-32 142.1 160 53.1
CANSAT80G2578 Cannabis sativa HOM05D003503 ORTHO05D003885 4.0e-32 142.1 160 53.1
Cc06_g16370 Coffea canephora HOM05D003503 ORTHO05D003885 5.2e-32 141.7 152 55.9
Potri.006G057800 Populus trichocarpa HOM05D003503 ORTHO05D003885 8.9e-32 141.0 158 57.0
CSS0023140 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 1.2e-31 140.6 144 57.6
COL.COLO4_28742 Corchorus olitorius HOM05D003503 ORTHO05D003885 1.2e-31 140.6 158 51.9
Peaxi162Scf00258g00220 Petunia axillaris HOM05D003503 ORTHO05D003885 1.5e-31 140.2 152 55.9
MD14G1063100 Malus domestica HOM05D003503 ORTHO05D003885 2.0e-31 139.8 156 55.8
Migut.K00058 Erythranthe guttata HOM05D003503 ORTHO05D003885 3.4e-31 139.0 158 54.4
Nitab4.5_0006853g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 3.4e-31 139.0 158 55.1
CAN.G128.30 Capsicum annuum HOM05D003503 ORTHO05D003885 5.8e-31 138.3 158 52.5
CiPaw.09G033400 Carya illinoinensis HOM05D003503 ORTHO05D003885 5.8e-31 138.3 147 57.8
DCAR_024103 Daucus carota HOM05D003503 ORTHO05D003885 5.8e-31 138.3 196 48.5
HanXRQChr06g0176361 Helianthus annuus HOM05D003503 ORTHO05D003885 5.8e-31 138.3 153 54.9
Sed0025913 Sechium edule HOM05D003503 ORTHO05D003885 5.8e-31 138.3 158 58.2
SGA_v2.0_scaffold69G23080 Striga asiatica HOM05D003503 ORTHO05D003885 5.8e-31 138.3 158 53.2
Thecc.06G029500 Theobroma cacao HOM05D003503 ORTHO05D003885 5.8e-31 138.3 154 53.2
FAN19G1882 Fragaria x ananassa HOM05D003503 ORTHO05D003885 9.8e-31 137.5 149 55.0
Potri.016G050300 Populus trichocarpa HOM05D003503 ORTHO05D003885 9.8e-31 137.5 190 52.6
DCAR_024104 Daucus carota HOM05D003503 ORTHO05D003885 1.7e-30 136.7 198 48.0
Peaxi162Scf00285g00427 Petunia axillaris HOM05D003503 ORTHO05D003885 1.7e-30 136.7 152 55.3
Peaxi162Scf00406g00711 Petunia axillaris HOM05D003503 ORTHO05D003885 2.2e-30 136.3 152 52.0
Haze_19934 Corylus avellana HOM05D003503 ORTHO05D003885 4.9e-30 135.2 195 49.2
Dinv24108 Davidia involucrata HOM05D003503 ORTHO05D000616 6.4e-30 134.8 179 48.0
TPR.G4785 Trifolium pratense HOM05D003503 ORTHO05D003885 8.3e-30 134.4 159 52.8
Cfa020096 Carpinus fangiana HOM05D003503 ORTHO05D003885 1.1e-29 134.0 159 54.1
Cpa.g.sc85.97 Carica papaya HOM05D003503 ORTHO05D003885 1.4e-29 133.7 172 53.5
ClCG04G000340 Citrullus lanatus HOM05D003503 ORTHO05D003885 1.9e-29 133.3 160 55.0
vmacro09100 Vaccinium macrocarpon HOM05D003503 ORTHO05D003885 1.9e-29 133.3 199 47.7
Solyc10g080400.2 Solanum lycopersicum HOM05D003503 ORTHO05D003885 2.4e-29 132.9 181 49.2
Sopen10g030940 Solanum pennellii HOM05D003503 ORTHO05D003885 2.4e-29 132.9 158 53.2
MELO3C023180.2 Cucumis melo HOM05D003503 ORTHO05D003885 3.2e-29 132.5 159 53.5
Sabra16G0053800 Salix brachista HOM05D003503 ORTHO05D003885 3.2e-29 132.5 161 54.0
CsaV3_4G010540 Cucumis sativus L. HOM05D003503 ORTHO05D003885 4.1e-29 132.1 159 53.5
Lalb_Chr18g0047601 Lupinus albus HOM05D003503 ORTHO05D003885 4.1e-29 132.1 153 55.6
SalBow6G1355 Salvia bowleyana HOM05D003503 ORTHO05D003885 4.1e-29 132.1 182 50.0
PGSC0003DMG402023713 Solanum tuberosum HOM05D003503 ORTHO05D003885 5.4e-29 131.7 181 48.1
BcaC01g05380 Brassica carinata HOM05D003503 ORTHO05D003885 9.2e-29 131.0 159 51.6
HanXRQChr05g0132771 Helianthus annuus HOM05D003503 ORTHO05D003885 1.2e-28 130.6 153 54.9
SHI33674 Sapria himalayana HOM05D003503 ORTHO05D003885 1.2e-28 130.6 156 51.3
Haze_20095 Corylus avellana HOM05D003503 ORTHO05D003885 1.6e-28 130.2 178 49.4
MSTRG.10833 Avicennia marina HOM05D003503 ORTHO05D003885 2.0e-28 129.8 158 51.3
Cpa.g.sc85.98 Carica papaya HOM05D003503 ORTHO05D003885 2.0e-28 129.8 188 46.3
Glyma.19G144400 Glycine max HOM05D003503 ORTHO05D003885 2.7e-28 129.4 150 52.7
MSTRG.26098 Avicennia marina HOM05D003503 ORTHO05D003885 4.6e-28 128.6 157 54.1
Phvul.001G138700 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 4.6e-28 128.6 158 55.1
Sed0010654 Sechium edule HOM05D003503 ORTHO05D003885 6.0e-28 128.3 160 55.0
Psat3g070200 Pisum sativum HOM05D003503 ORTHO05D003885 7.8e-28 127.9 158 50.6
Glyma.03G141800 Glycine max HOM05D003503 ORTHO05D003885 1.3e-27 127.1 181 49.2
VMungo1383G2219 Vigna mungo HOM05D003503 ORTHO05D003885 1.3e-27 127.1 174 48.9
Nn2g15511 Nelumbo nucifera HOM05D003503 ORTHO05D003885 1.7e-27 126.7 181 43.1
ECA248G2321 Erigeron canadensis HOM05D003503 ORTHO05D003885 3.0e-27 125.9 154 51.3
Lju124A33T34 Lonicera japonica HOM05D003503 ORTHO05D003885 3.9e-27 125.6 136 58.8
Medtr7g092570 Medicago truncatula HOM05D003503 ORTHO05D003885 3.9e-27 125.6 161 49.1
arahy.Tifrunner.gnm1.ann1.E4BIS3 Arachis hypogaea HOM05D003503 ORTHO05D003885 8.6e-27 124.4 153 52.9
arahy.Tifrunner.gnm1.ann1.P0WGR4 Arachis hypogaea HOM05D003503 ORTHO05D003885 1.1e-26 124.0 153 52.9
DCAR_020468 Daucus carota HOM05D003503 ORTHO05D003885 1.1e-26 124.0 157 51.0
HanXRQChr15g0483571 Helianthus annuus HOM05D003503 ORTHO05D003885 1.5e-26 123.6 144 54.9
Lalb_Chr15g0078851 Lupinus albus HOM05D003503 ORTHO05D003885 1.9e-26 123.2 144 54.9
Lsat_1_v5_gn_8_79401 Lactuca sativa HOM05D003503 ORTHO05D003885 7.3e-26 121.3 158 49.4
Ca_08494_v3 Cicer arietinum L. HOM05D003503 ORTHO05D003885 1.2e-25 120.6 156 53.2
ECA248G0895 Erigeron canadensis HOM05D003503 ORTHO05D003885 3.6e-25 119.0 154 48.7
SalBow1G6809 Salvia bowleyana HOM05D003503 ORTHO05D003885 8.1e-25 117.9 135 52.6
Lj1g0016608 Lotus japonicus HOM05D003503 ORTHO05D003885 1.4e-24 117.1 160 50.6
BcaB01g03443 Brassica carinata HOM05D002899 ORTHO05D003885 8.9e-24 114.4 97 71.1
Oeu033755.1 Olea europaea HOM05D003503 ORTHO05D003885 2.6e-23 112.8 183 46.4
TWI53G0899 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 7.5e-23 111.3 158 49.4
PSO339G6426 Papaver somniferum HOM05D003503 ORTHO05D003885 9.8e-23 110.9 153 44.4
AUR62021551 Chenopodium quinoa HOM05D003503 ORTHO05D003885 1.7e-22 110.2 180 42.2
PSO675G0055 Papaver somniferum HOM05D003503 ORTHO05D003885 2.2e-22 109.8 173 45.1
EL10Ac5g11139 Beta vulgaris HOM05D003503 ORTHO05D003885 2.9e-22 109.4 150 44.0
PSO384G2274 Papaver somniferum HOM05D003503 ORTHO05D003885 2.9e-22 109.4 159 44.0
PSO541G0601 Papaver somniferum HOM05D003503 ORTHO05D003885 8.3e-22 107.8 173 45.1
Aqoxy2G00125 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 3.2e-21 105.9 150 46.0
Aqoxy2G00107 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 5.4e-21 105.1 154 46.1
CSS0045770 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 3.5e-20 102.4 176 42.6
Hund02580 Selenicereus undatus HOM05D003503 ORTHO05D003885 1.0e-19 100.9 150 42.7
Aqoxy2G00088 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 2.3e-19 99.8 166 42.8
AUR62008542 Chenopodium quinoa HOM05D003503 ORTHO05D003885 2.3e-19 99.8 171 39.8
Ah.13g073290 Amaranthus hybridus HOM05D003503 ORTHO05D003885 3.9e-19 99.0 151 39.7
AUR62002437 Chenopodium quinoa HOM05D003503 ORTHO05D003885 5.1e-19 98.6 147 44.2
EL10Ac3g06131 Beta vulgaris HOM05D003503 ORTHO05D003885 6.6e-19 98.2 153 41.2
AUR62023750 Chenopodium quinoa HOM05D003503 ORTHO05D003885 2.5e-18 96.3 147 42.2
Hund02581 Selenicereus undatus HOM05D003503 ORTHO05D003885 3.3e-18 95.9 154 42.9
Hund02582 Selenicereus undatus HOM05D003503 ORTHO05D003885 3.3e-18 95.9 147 40.8
C07p14610 Brassica napus HOM05D003503 ORTHO05D003885 5.6e-18 95.1 154 44.2
Sc19g0006890 Simmondsia chinensis HOM05D003503 ORTHO05D003885 5.6e-18 95.1 179 41.3
SGA_v2.0_scaffold105G30470 Striga asiatica HOM05D003503 ORTHO05D003885 6.2e-17 91.7 128 46.9
TAR629G2270 Trochodendron aralioides HOM05D003503 ORTHO05D003885 5.2e-16 88.6 145 42.1
TAR633G0309 Trochodendron aralioides HOM05D000064 ORTHO05D003885 9.9e-15 84.3 112 44.6
C04p28750 Brassica napus HOM05D003503 ORTHO05D003885 3.7e-14 82.4 95 53.7
BolC7t41959H Brassica oleracea HOM05D003503 ORTHO05D003885 1.1e-13 80.9 118 45.8
Migut.J01803 Erythranthe guttata HOM05D003503 ORTHO05D003885 2.4e-13 79.7 126 46.0
Ah.02g114090 Amaranthus hybridus HOM05D000622 ORTHO05D000475 4.1e-13 79.0 146 40.4
SalBow1G6855 Salvia bowleyana HOM05D003503 ORTHO05D003885 2.1e-12 76.6 97 53.6
C03p27180 Brassica napus HOM05D003503 ORTHO05D003885 2.7e-12 76.3 78 57.7
PGR031G3517 Punica granatum HOM05D003503 ORTHO05D003885 1.3e-11 73.9 284 27.5
RcHm_v2.0_Chr7g0219161 Rosa chinensis HOM05D003503 ORTHO05D003885 2.5e-10 69.7 98 46.9
MBI04_g14263_MAGBIO Magnolia biondii HOM05D000102 ORTHO05D000138 1.2e-09 67.4 180 30.6
HanXRQChr06g0172301 Helianthus annuus HOM05D003503 ORTHO05D003885 2.1e-09 66.6 53 66.0
unitig_749.g14030 Utricularia gibba HOM05D003503 ORTHO05D003885 2.1e-09 66.6 141 33.3
Phvul.008G153400 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 4.0e-08 62.4 104 43.3
Os04g0472700 Oryza sativa ssp. japonica HOM05D003503 ORTHO05D003885 2.0e-07 60.1 157 31.2
Zm00001eb245710 Zea mays HOM05D020767 ORTHO05D003885 4.4e-07 58.9 160 33.8
Os02g0591500 Oryza sativa ssp. japonica HOM05D020767 ORTHO05D003885 5.8e-07 58.5 173 30.6
Phvul.011G101601 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 1.3e-06 57.4 87 44.8
PGR031G2261 Punica granatum HOM05D003503 ORTHO05D003885 2.9e-06 56.2 111 35.1
Zm00001eb079910 Zea mays HOM05D003503 ORTHO05D003885 6.4e-06 55.1 159 30.8


User provided reference genes

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