Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung05878 Brassica carinata HOM05D003187 ORTHO05D003630 3.2e-93 345.1 178 100.0
C01p12350 Brassica napus HOM05D003187 ORTHO05D003630 3.9e-83 311.6 178 91.0
BolC1t01210H Brassica oleracea HOM05D003187 ORTHO05D003630 3.9e-83 311.6 178 91.0
C07p49720 Brassica napus HOM05D003187 ORTHO05D003630 2.1e-81 305.8 177 88.7
BolC7t45473H Brassica oleracea HOM05D003187 ORTHO05D003630 2.1e-81 305.8 177 88.7
BcaC09g51513 Brassica carinata HOM05D003187 ORTHO05D003630 3.1e-80 302.0 178 88.8
A01p10400 Brassica napus HOM05D003187 ORTHO05D003630 3.1e-80 302.0 171 92.4
BcaNung02707 Brassica carinata HOM05D003187 ORTHO05D003630 8.9e-80 300.4 177 88.1
BraA01t00987Z Brassica rapa HOM05D003187 ORTHO05D003630 2.0e-79 299.3 171 91.8
BcaC06g30583 Brassica carinata HOM05D003187 ORTHO05D003630 3.4e-79 298.5 177 87.6
Sp7g15590 Schrenkiella parvula HOM05D003187 ORTHO05D003630 5.8e-79 297.7 178 88.2
BraA08t33360Z Brassica rapa HOM05D003187 ORTHO05D003630 4.1e-77 291.6 178 87.6
A08p13810 Brassica napus HOM05D003187 ORTHO05D003630 7.8e-76 287.3 178 86.5
A03p51310 Brassica napus HOM05D003187 ORTHO05D003630 4.3e-74 281.6 177 84.7
BraA03t14212Z Brassica rapa HOM05D003187 ORTHO05D003630 2.8e-73 278.9 177 84.2
CARHR225270 Cardamine hirsuta HOM05D003187 ORTHO05D003630 6.2e-73 277.7 179 83.8
AL7G35850 Arabidopsis lyrata HOM05D003187 ORTHO05D003630 1.2e-71 273.5 178 81.5
Carub.0007s2280 Capsella rubella HOM05D003187 ORTHO05D003630 1.2e-71 273.5 178 82.0
AT4G18440 Arabidopsis thaliana HOM05D003187 ORTHO05D003630 3.2e-69 265.4 179 79.3
AT1G36280 Arabidopsis thaliana HOM05D003187 ORTHO05D003630 1.3e-67 260.0 178 79.2
Aa31LG6G1160 Aethionema arabicum HOM05D003187 ORTHO05D003630 2.6e-63 245.7 178 76.4
BcaC01g00541 Brassica carinata HOM05D003187 ORTHO05D003630 2.6e-63 245.7 180 77.8
AL3G37850 Arabidopsis lyrata HOM05D003187 ORTHO05D003630 1.7e-59 233.0 127 92.1
Thhalv10025077m.g Eutrema salsugineum HOM05D003187 ORTHO05D003630 6.6e-59 231.1 127 92.9
THA.LOC104806141 Tarenaya hassleriana HOM05D003187 ORTHO05D003630 1.5e-55 219.9 173 68.2
Ciclev10031157m.g Citrus clementina HOM05D003187 ORTHO05D003630 1.9e-53 213.0 150 72.7
Thecc.10G027100 Theobroma cacao HOM05D003187 ORTHO05D003630 1.0e-51 207.2 146 71.2
COL.COLO4_25670 Corchorus olitorius HOM05D003187 ORTHO05D003630 3.9e-51 205.3 123 81.3
GSVIVG01016375001 Vitis vinifera HOM05D003187 ORTHO05D003630 5.1e-51 204.9 184 61.4
Dinv20950 Davidia involucrata HOM05D003187 ORTHO05D003630 6.7e-51 204.5 177 63.3
Dinv20993 Davidia involucrata HOM05D003187 ORTHO05D003630 6.7e-51 204.5 177 63.3
Dinv34429 Davidia involucrata HOM05D003187 ORTHO05D003630 8.7e-51 204.1 124 81.5
Potri.010G193400 Populus trichocarpa HOM05D003187 ORTHO05D003630 1.9e-50 203.0 162 65.4
Atru.chr12.251 Acer truncatum HOM05D003187 ORTHO05D003630 7.4e-50 201.1 139 73.4
Sabra10G0148900 Salix brachista HOM05D003187 ORTHO05D003630 1.3e-49 200.3 165 66.7
CSS0010540 Camellia sinensis var. sinensis HOM05D003187 ORTHO05D003630 2.8e-49 199.1 133 75.2
CSS0009728 Camellia sinensis var. sinensis HOM05D003187 ORTHO05D003630 1.1e-48 197.2 122 78.7
Eucgr.G03026 Eucalyptus grandis HOM05D003187 ORTHO05D003630 1.4e-48 196.8 124 76.6
Manes.07G124700 Manihot esculenta HOM05D003187 ORTHO05D003630 1.8e-48 196.4 127 74.8
Manes.10G018200 Manihot esculenta HOM05D003187 ORTHO05D003630 1.8e-48 196.4 132 72.0
Gohir.A05G346100 Gossypium hirsutum HOM05D003187 ORTHO05D003630 2.0e-47 193.0 115 82.6
Prupe.7G059800 Prunus persica HOM05D003187 ORTHO05D003630 2.6e-47 192.6 170 63.5
PGSC0003DMG400027451 Solanum tuberosum HOM05D003187 ORTHO05D003630 5.8e-47 191.4 136 69.1
Cc06_g17320 Coffea canephora HOM05D003187 ORTHO05D003630 9.9e-47 190.7 187 57.8
Gohir.D04G066500 Gossypium hirsutum HOM05D003187 ORTHO05D003630 9.9e-47 190.7 181 59.7
Gorai.012G075300 Gossypium raimondii HOM05D003187 ORTHO05D003630 9.9e-47 190.7 181 59.7
QL08p062568 Quercus lobata HOM05D003187 ORTHO05D003630 9.9e-47 190.7 160 64.4
CAN.G584.39 Capsicum annuum HOM05D003187 ORTHO05D003630 1.3e-46 190.3 136 67.6
CiPaw.05G043000 Carya illinoinensis HOM05D003187 ORTHO05D003630 1.7e-46 189.9 116 78.4
Cc05_g02550 Coffea canephora HOM05D003187 ORTHO05D003630 1.7e-46 189.9 179 57.0
Sopen07g002610 Solanum pennellii HOM05D003187 ORTHO05D003630 1.7e-46 189.9 136 68.4
Solyc07g006530.3 Solanum lycopersicum HOM05D003187 ORTHO05D003630 2.2e-46 189.5 136 68.4
TWI53G1626 Tripterygium wilfordii HOM05D003187 ORTHO05D003630 2.2e-46 189.5 159 65.4
Haze_17177 Corylus avellana HOM05D003187 ORTHO05D003630 4.9e-46 188.3 153 65.4
Actinidia13914 Actinidia chinensis HOM05D003187 ORTHO05D003630 6.4e-46 188.0 162 62.3
CANSAT80G0456 Cannabis sativa HOM05D003187 ORTHO05D003630 6.4e-46 188.0 131 71.0
arahy.Tifrunner.gnm1.ann1.K3QQ9E Arachis hypogaea HOM05D003187 ORTHO05D003630 1.1e-45 187.2 129 71.3
CiPaw.06G148700 Carya illinoinensis HOM05D003187 ORTHO05D003630 1.1e-45 187.2 177 58.2
Cc05_g02410 Coffea canephora HOM05D003187 ORTHO05D003630 1.1e-45 187.2 186 56.5
arahy.Tifrunner.gnm1.ann1.P69V6G Arachis hypogaea HOM05D003187 ORTHO05D003630 1.4e-45 186.8 129 71.3
Prupe.1G197600 Prunus persica HOM05D003187 ORTHO05D003630 1.9e-45 186.4 127 73.2
Nitab4.5_0000244g0020 Nicotiana tabacum HOM05D003187 ORTHO05D003630 3.2e-45 185.7 129 69.8
CANSAT80G1383 Cannabis sativa HOM05D003187 ORTHO05D003630 4.2e-45 185.3 131 70.2
TAR369G0547 Trochodendron aralioides HOM05D003187 ORTHO05D003630 4.2e-45 185.3 124 73.4
arahy.Tifrunner.gnm1.ann1.GJ5BI6 Arachis hypogaea HOM05D003187 ORTHO05D003630 5.5e-45 184.9 165 60.0
MD04G1043000 Malus domestica HOM05D003187 ORTHO05D003630 5.5e-45 184.9 107 83.2
PSO339G2876 Papaver somniferum HOM05D003187 ORTHO05D003630 5.5e-45 184.9 113 77.0
PGR042G2760 Punica granatum HOM05D003187 ORTHO05D003630 7.1e-45 184.5 145 64.8
DCAR_011784 Daucus carota HOM05D003187 ORTHO05D003630 9.3e-45 184.1 121 72.7
Nitab4.5_0009672g0030 Nicotiana tabacum HOM05D003187 ORTHO05D003630 1.2e-44 183.7 129 69.8
PSO384G1733 Papaver somniferum HOM05D003187 ORTHO05D003630 1.2e-44 183.7 138 68.8
RcHm_v2.0_Chr7g0194071 Rosa chinensis HOM05D003187 ORTHO05D003630 1.2e-44 183.7 126 72.2
arahy.Tifrunner.gnm1.ann1.0XII0R Arachis hypogaea HOM05D003187 ORTHO05D003630 1.6e-44 183.3 165 59.4
MD04G1043400 Malus domestica HOM05D003187 ORTHO05D003630 2.7e-44 182.6 180 58.3
Nitab4.5_0008689g0020 Nicotiana tabacum HOM05D003187 ORTHO05D003630 2.7e-44 182.6 129 69.8
Nn2g12076 Nelumbo nucifera HOM05D003187 ORTHO05D003630 4.6e-44 181.8 121 72.7
Lj8A73G45 Lonicera japonica HOM05D003187 ORTHO05D003630 6.0e-44 181.4 115 78.3
LjContig00357g0016423 Lotus japonicus HOM05D003187 ORTHO05D003630 6.0e-44 181.4 153 62.7
SalBow1G1358 Salvia bowleyana HOM05D003187 ORTHO05D003630 6.0e-44 181.4 151 65.6
Peaxi162Scf00297g01023 Petunia axillaris HOM05D003187 ORTHO05D003630 7.9e-44 181.0 175 55.4
Migut.F00885 Erythranthe guttata HOM05D003187 ORTHO05D003630 1.0e-43 180.6 144 64.6
Nn2g11365 Nelumbo nucifera HOM05D003187 ORTHO05D003630 1.3e-43 180.3 121 71.1
Lalb_Chr10g0104991 Lupinus albus HOM05D003187 ORTHO05D003630 1.8e-43 179.9 176 55.1
Phvul.008G226900 Phaseolus vulgaris HOM05D003187 ORTHO05D003630 2.3e-43 179.5 172 58.7
Aqoxy6G01396 Aquilegia oxysepala HOM05D003187 ORTHO05D003630 3.0e-43 179.1 115 76.5
FvH4_5g04980 Fragaria vesca HOM05D003187 ORTHO05D003630 5.1e-43 178.3 126 70.6
vmacro10066 Vaccinium macrocarpon HOM05D003187 ORTHO05D003630 5.1e-43 178.3 179 56.4
FAN13G0040 Fragaria x ananassa HOM05D003187 ORTHO05D003630 6.7e-43 177.9 124 71.8
Hund05583 Selenicereus undatus HOM05D003187 ORTHO05D003630 6.7e-43 177.9 116 75.9
FAN18G0443 Fragaria x ananassa HOM05D003187 ORTHO05D003630 8.7e-43 177.6 164 60.4
FAN18G2229 Fragaria x ananassa HOM05D003187 ORTHO05D003630 1.1e-42 177.2 164 60.4
Oeu027845.1 Olea europaea HOM05D003187 ORTHO05D003630 1.5e-42 176.8 124 71.8
Sc17g0002050 Simmondsia chinensis HOM05D003187 ORTHO05D003630 1.5e-42 176.8 138 66.7
ClCG07G003910 Citrullus lanatus HOM05D003187 ORTHO05D003630 1.9e-42 176.4 111 73.9
MELO3C025148.2 Cucumis melo HOM05D003187 ORTHO05D003630 1.9e-42 176.4 111 74.8
CsaV3_5G008870 Cucumis sativus L. HOM05D003187 ORTHO05D003630 1.9e-42 176.4 111 74.8
BolC3t20388H Brassica oleracea HOM05D003187 ORTHO05D003630 3.3e-42 175.6 95 91.6
CAN.G1271.8 Capsicum annuum HOM05D003187 ORTHO05D003630 3.3e-42 175.6 120 70.8
FAN06G4812 Fragaria x ananassa HOM05D003187 ORTHO05D003630 3.3e-42 175.6 126 69.8
FAN08G2825 Fragaria x ananassa HOM05D003187 ORTHO05D003630 3.3e-42 175.6 164 60.4
Nitab4.5_0012646g0020 Nicotiana tabacum HOM05D003187 ORTHO05D003630 4.3e-42 175.3 120 70.8
Hund18445 Selenicereus undatus HOM05D003187 ORTHO05D003630 4.3e-42 175.3 111 78.4
FvH4_7g08523 Fragaria vesca HOM05D003187 ORTHO05D003630 7.4e-42 174.5 126 69.0
FAN04G2380 Fragaria x ananassa HOM05D003187 ORTHO05D003630 7.4e-42 174.5 126 69.0
Ca_05654_v3 Cicer arietinum L. HOM05D003187 ORTHO05D003630 9.6e-42 174.1 120 70.0
Cc00_g04440 Coffea canephora HOM05D003187 ORTHO05D003630 1.3e-41 173.7 180 53.3
VMungo0647G1330 Vigna mungo HOM05D003187 ORTHO05D003630 1.3e-41 173.7 158 60.1
Sed0019761 Sechium edule HOM05D003187 ORTHO05D003630 1.6e-41 173.3 111 73.9
EL10Ac7g17924 Beta vulgaris HOM05D003187 ORTHO05D003630 2.8e-41 172.6 156 60.3
Glyma.14G062500 Glycine max HOM05D003187 ORTHO05D003630 3.7e-41 172.2 156 60.3
Glyma.02G254000 Glycine max HOM05D003187 ORTHO05D003630 4.8e-41 171.8 120 70.0
HanXRQChr07g0202751 Helianthus annuus HOM05D003187 ORTHO05D003630 1.4e-40 170.2 113 71.7
Medtr7g092860 Medicago truncatula HOM05D003187 ORTHO05D003630 2.4e-40 169.5 160 58.1
HanXRQChr14g0459901 Helianthus annuus HOM05D003187 ORTHO05D003630 3.1e-40 169.1 154 60.4
SGA_v2.0_scaffold62G21340 Striga asiatica HOM05D003187 ORTHO05D003630 4.0e-40 168.7 144 61.1
TPR.G8049 Trifolium pratense HOM05D003187 ORTHO05D003630 4.0e-40 168.7 165 56.4
CDE12G0549 Ceratophyllum demersum HOM05D003187 ORTHO05D003630 9.0e-40 167.5 127 68.5
Rhsim09G0171800 Rhododendron simsii HOM05D003187 ORTHO05D003630 9.0e-40 167.5 133 63.9
unitig_27.g25097 Utricularia gibba HOM05D003187 ORTHO05D003630 9.0e-40 167.5 144 62.5
ECA232G0632 Erigeron canadensis HOM05D003187 ORTHO05D003630 1.2e-39 167.2 156 57.1
ECA238G3690 Erigeron canadensis HOM05D003187 ORTHO05D003630 2.0e-39 166.4 124 67.7
AUR62001143 Chenopodium quinoa HOM05D003187 ORTHO05D003630 2.6e-39 166.0 162 56.8
CDE04G1847 Ceratophyllum demersum HOM05D003187 ORTHO05D003630 3.4e-39 165.6 152 60.5
vmacro14468 Vaccinium macrocarpon HOM05D003187 ORTHO05D003630 3.4e-39 165.6 110 73.6
Lsat_1_v5_gn_2_122660 Lactuca sativa HOM05D003187 ORTHO05D003630 1.3e-38 163.7 157 57.3
Ah.08g214730 Amaranthus hybridus HOM05D003187 ORTHO05D003630 1.7e-38 163.3 155 59.4
BcaC03g16804 Brassica carinata HOM05D003187 ORTHO05D003630 4.9e-38 161.8 99 82.8
FAN03G0133 Fragaria x ananassa HOM05D003187 ORTHO05D003630 6.5e-38 161.4 116 68.1
MBI17_g24519_MAGBIO Magnolia biondii HOM05D003187 ORTHO05D003630 8.4e-38 161.0 166 53.0
Lsat_1_v5_gn_7_58981 Lactuca sativa HOM05D003187 ORTHO05D003630 1.4e-37 160.2 153 54.9
Psat6g127920 Pisum sativum HOM05D003187 ORTHO05D003630 1.9e-37 159.8 166 56.6
ATR0026G045 Amborella trichopoda HOM05D003187 ORTHO05D003630 1.2e-36 157.1 113 66.4
Glyma.10G247775 Glycine max HOM05D003187 ORTHO05D003630 2.1e-36 156.4 139 59.7
Zm00001eb015040 Zea mays HOM05D003187 ORTHO05D003630 7.9e-36 154.5 107 72.9
Zm00001eb395810 Zea mays HOM05D003187 ORTHO05D003630 1.8e-35 153.3 107 72.9
Peaxi162Scf00457g00110 Petunia axillaris HOM05D003187 ORTHO05D003630 5.1e-35 151.8 117 66.7
Cpa.g.sc19.222 Carica papaya HOM05D003187 ORTHO05D003630 9.7e-34 147.5 202 49.5
Os03g0313600 Oryza sativa ssp. japonica HOM05D003187 ORTHO05D003630 1.3e-33 147.1 115 65.2
BolC2t10727H Brassica oleracea HOM05D003187 ORTHO05D003630 1.6e-33 146.7 81 90.1
HPP92_018291 Vanilla planifolia HOM05D003187 ORTHO05D003630 1.8e-32 143.3 158 51.3
C02p46750 Brassica napus HOM05D003187 ORTHO05D003630 5.3e-32 141.7 80 88.8
RcHm_v2.0_Chr7g0186531 Rosa chinensis HOM05D003187 ORTHO05D003630 1.5e-31 140.2 101 71.3
Mapoly0031s0040 Marchantia polymorpha HOM05D003187 ORTHO05D003630 1.3e-30 137.1 113 60.2
Actinidia00931 Actinidia chinensis HOM05D003187 ORTHO05D003630 8.5e-30 134.4 93 71.0
SMO356G0706 Selaginella moellendorffii HOM05D003187 ORTHO05D003630 1.9e-29 133.3 115 54.8
Duzib114G0739 Durio zibethinus HOM05D003187 ORTHO05D003630 3.2e-29 132.5 131 56.5
A09p24000 Brassica napus HOM05D003187 ORTHO05D003630 9.3e-29 131.0 74 87.8
BraA04t16912Z Brassica rapa HOM05D003187 ORTHO05D003630 2.1e-28 129.8 74 86.5
BraA04t16916Z Brassica rapa HOM05D003187 ORTHO05D003630 2.7e-28 129.4 74 86.5
C04p53110 Brassica napus HOM05D003187 ORTHO05D003630 6.1e-28 128.3 74 85.1
FAN18G2583 Fragaria x ananassa HOM05D003187 ORTHO05D003630 6.1e-28 128.3 107 63.6
AUR62016534 Chenopodium quinoa HOM05D003187 ORTHO05D003630 7.9e-28 127.9 86 70.9
FvH4_5g11350 Fragaria vesca HOM05D003187 ORTHO05D003630 7.9e-28 127.9 107 63.6
A04p12520 Brassica napus HOM05D003187 ORTHO05D003630 1.8e-27 126.7 74 83.8
AagrBONN_evm.TU.Sc2ySwM_228.2882 Anthoceros agrestis HOM05D003187 ORTHO05D003630 2.3e-27 126.3 124 54.0
Pp3c9_17690 Physcomitrium patens HOM05D003187 ORTHO05D003630 3.0e-27 125.9 114 55.3
MCO12G170 Micromonas commoda HOM05D003187 ORTHO05D003630 3.9e-27 125.6 111 52.3
AagrBONN_evm.TU.Sc2ySwM_228.636 Anthoceros agrestis HOM05D003187 ORTHO05D003630 1.5e-26 123.6 113 53.1
Actinidia25354 Actinidia chinensis HOM05D003187 ORTHO05D003630 2.2e-25 119.8 162 46.3
FAN18G3798 Fragaria x ananassa HOM05D003187 ORTHO05D003630 4.8e-25 118.6 107 59.8
FAN10G2756 Fragaria x ananassa HOM05D003187 ORTHO05D003630 8.2e-25 117.9 72 79.2
CBR_g16842 Chara braunii HOM05D003187 ORTHO05D003630 2.4e-24 116.3 113 51.3
SHI03521 Sapria himalayana HOM05D006228 ORTHO05D007847 5.3e-24 115.2 72 75.0
Cre13.g565450 Chlamydomonas reinhardtii HOM05D003187 ORTHO05D003630 6.9e-24 114.8 122 51.6
FAN08G1218 Fragaria x ananassa HOM05D003187 ORTHO05D003630 9.1e-24 114.4 107 57.9
PRCOL_00002332 Prasinoderma coloniale HOM05D003187 ORTHO05D003630 2.0e-23 113.2 107 53.3
SEGI_30099 Sequoiadendron giganteum HOM05D003187 ORTHO05D003630 2.7e-20 102.8 72 61.1
Nitab4.5_0007356g0030 Nicotiana tabacum HOM05D003187 ORTHO05D003630 6.7e-19 98.2 64 71.9
SEGI_38854 Sequoiadendron giganteum HOM05D011601 ORTHO05D003630 5.9e-15 85.1 81 48.1
Medtr5g081750 Medicago truncatula HOM05D003187 ORTHO05D003630 2.9e-14 82.8 164 37.8
Nitab4.5_0004610g0030 Nicotiana tabacum HOM05D003187 ORTHO05D003630 5.7e-10 68.6 49 65.3
MSTRG.13817 Avicennia marina HOM05D003187 ORTHO05D003630 3.7e-09 65.9 48 66.7
FAN08G0054 Fragaria x ananassa HOM05D003187 ORTHO05D000004 3.1e-08 62.8 91 41.8
FvH4_1g19761 Fragaria vesca HOM05D003187 ORTHO05D029490 2.6e-07 59.7 81 46.9
Medtr7g092840 Medicago truncatula HOM05D003187 ORTHO05D003630 1.0e-06 57.8 49 57.1
SEGI_12157 Sequoiadendron giganteum HOM05D003187 ORTHO05D003630 2.2e-06 56.6 65 49.2


User provided reference genes

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