Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung05827 Brassica carinata HOM05D006757 ORTHO05D004651 0.0e+00 1287.3 685 100.0
BcaC08g46956 Brassica carinata HOM05D006757 ORTHO05D004651 1.6e-241 839.7 761 71.0
BolC6t39938H Brassica oleracea HOM05D006757 ORTHO05D004651 7.3e-239 830.9 751 70.0
C06p49010 Brassica napus HOM05D006757 ORTHO05D004651 8.1e-238 827.4 775 68.1
A07p40640 Brassica napus HOM05D006757 ORTHO05D004651 1.2e-233 813.5 751 69.0
BraA07t31608Z Brassica rapa HOM05D006757 ORTHO05D004651 2.1e-233 812.8 757 68.8
BcaC08g46933 Brassica carinata HOM05D006757 ORTHO05D004651 5.4e-210 734.9 694 68.2
Sp5g30140 Schrenkiella parvula HOM05D006757 ORTHO05D004651 9.3e-210 734.2 764 63.2
AT1G75010 Arabidopsis thaliana HOM05D006757 ORTHO05D004651 2.3e-208 729.6 759 63.0
AL2G34890 Arabidopsis lyrata HOM05D006757 ORTHO05D004651 3.1e-205 719.2 757 62.1
Carub.0002s2179 Capsella rubella HOM05D006757 ORTHO05D004651 4.8e-198 695.3 749 60.9
Thhalv10018185m.g Eutrema salsugineum HOM05D006757 ORTHO05D004651 1.0e-192 677.6 752 60.8
Aa31LG4G5230 Aethionema arabicum HOM05D006757 ORTHO05D004651 6.1e-169 598.6 782 54.9
CARHR068320 Cardamine hirsuta HOM05D006757 ORTHO05D004651 7.7e-156 555.1 584 64.0
THA.LOC104809054 Tarenaya hassleriana HOM05D006757 ORTHO05D004651 3.7e-134 483.0 775 48.3
Sabra10G0071900 Salix brachista HOM05D006757 ORTHO05D004651 7.8e-100 369.0 777 37.3
BolC2t09256H Brassica oleracea HOM05D006757 ORTHO05D004651 6.9e-88 329.3 500 50.0
BcaC03g15537 Brassica carinata HOM05D006757 ORTHO05D004651 4.8e-81 306.6 488 51.6
Lj6C727G2 Lonicera japonica HOM05D006757 ORTHO05D004651 5.5e-77 293.1 781 34.4
Gohir.A01G144000 Gossypium hirsutum HOM05D006757 ORTHO05D004651 1.2e-76 292.0 714 35.9
MD16G1009700 Malus domestica HOM05D006757 ORTHO05D004651 1.6e-76 291.6 709 37.0
Actinidia12418 Actinidia chinensis HOM05D006757 ORTHO05D004651 5.1e-75 286.6 725 35.4
Nn4g24781 Nelumbo nucifera HOM05D006757 ORTHO05D004651 5.1e-75 286.6 761 34.3
PGR142G0977 Punica granatum HOM05D006757 ORTHO05D004651 9.7e-74 282.3 719 34.8
CSS0018736 Camellia sinensis var. sinensis HOM05D006757 ORTHO05D004651 1.6e-73 281.6 792 34.7
Gohir.D01G136700 Gossypium hirsutum HOM05D006757 ORTHO05D004651 4.8e-73 280.0 717 34.9
Gorai.002G169200 Gossypium raimondii HOM05D006757 ORTHO05D004651 9.0e-72 275.8 717 35.0
Thecc.02G299300 Theobroma cacao HOM05D006757 ORTHO05D004651 2.6e-71 274.2 786 34.2
Duzib248G0842 Durio zibethinus HOM05D006757 ORTHO05D004651 3.2e-69 267.3 791 34.3
FAN12G3615 Fragaria x ananassa HOM05D006757 ORTHO05D004651 4.2e-69 266.9 692 35.1
Prupe.1G340900 Prunus persica HOM05D006757 ORTHO05D004651 5.5e-69 266.5 712 35.7
COL.COLO4_27539 Corchorus olitorius HOM05D006757 ORTHO05D004651 2.7e-68 264.2 715 34.8
FAN07G0462 Fragaria x ananassa HOM05D006757 ORTHO05D004651 2.7e-68 264.2 675 35.9
RcHm_v2.0_Chr4g0445651 Rosa chinensis HOM05D006757 ORTHO05D004651 6.1e-68 263.1 705 35.3
CiPaw.05G164400 Carya illinoinensis HOM05D006757 ORTHO05D004651 3.0e-67 260.8 725 34.1
Dinv02708 Davidia involucrata HOM05D006757 ORTHO05D004651 3.9e-67 260.4 706 35.0
FAN17G2536 Fragaria x ananassa HOM05D006757 ORTHO05D004651 6.7e-67 259.6 708 34.6
TWI53G1444 Tripterygium wilfordii HOM05D006757 ORTHO05D004651 8.2e-65 252.7 716 34.4
TAR622G0072 Trochodendron aralioides HOM05D006757 ORTHO05D004651 3.1e-64 250.8 725 35.0
GSVIVG01010290001 Vitis vinifera HOM05D006757 ORTHO05D004651 2.0e-63 248.1 621 36.6
Lalb_Chr21g0306871 Lupinus albus HOM05D006757 ORTHO05D004651 5.9e-63 246.5 724 32.3
QL03p041041 Quercus lobata HOM05D006757 ORTHO05D004651 5.0e-62 243.4 806 31.1
CsaV3_5G017370 Cucumis sativus L. HOM05D006757 ORTHO05D004651 1.9e-61 241.5 588 34.9
ECA233G5323 Erigeron canadensis HOM05D006757 ORTHO05D004651 7.2e-61 239.6 751 34.0
Psat6g231440 Pisum sativum HOM05D006757 ORTHO05D004651 7.2e-61 239.6 584 34.4
Lj5g0011768 Lotus japonicus HOM05D006757 ORTHO05D004651 9.4e-61 239.2 723 32.2
MELO3C005216.2 Cucumis melo HOM05D006757 ORTHO05D004651 2.1e-60 238.0 589 34.8
TPR.G2437 Trifolium pratense HOM05D006757 ORTHO05D004651 4.7e-60 236.9 651 33.6
Ca_11197_v3 Cicer arietinum L. HOM05D006757 ORTHO05D004651 6.1e-60 236.5 613 33.3
CANSAT78G0289 Cannabis sativa HOM05D006757 ORTHO05D004651 7.9e-60 236.1 580 34.0
FvH4_4g36030 Fragaria vesca HOM05D006757 ORTHO05D004651 7.9e-60 236.1 601 36.6
Medtr1g112280 Medicago truncatula HOM05D006757 ORTHO05D004651 2.3e-59 234.6 581 33.6
Lsat_1_v5_gn_8_33901 Lactuca sativa HOM05D006757 ORTHO05D004651 5.1e-59 233.4 687 31.6
HanXRQChr12g0365871 Helianthus annuus HOM05D006757 ORTHO05D004651 6.7e-59 233.0 696 32.8
ClCG01G006950 Citrullus lanatus HOM05D006757 ORTHO05D004651 5.7e-58 229.9 598 34.1
Rhsim09G0078600 Rhododendron simsii HOM05D006757 ORTHO05D004651 2.2e-57 228.0 621 34.6
Aqoxy3G04184 Aquilegia oxysepala HOM05D006757 ORTHO05D004651 8.2e-57 226.1 722 33.4
Ciclev10006553m.g Citrus clementina HOM05D006757 ORTHO05D004651 1.4e-56 225.3 600 36.3
MSTRG.2098 Avicennia marina HOM05D006757 ORTHO05D004651 1.8e-56 224.9 716 32.8
Sopen01g003410 Solanum pennellii HOM05D006757 ORTHO05D004651 1.2e-55 222.2 703 32.3
Solyc01g007880.4 Solanum lycopersicum HOM05D006757 ORTHO05D004651 2.0e-55 221.5 703 32.7
Glyma.10G280500 Glycine max HOM05D006757 ORTHO05D004651 1.0e-54 219.2 736 30.3
VMungo0720G1053 Vigna mungo HOM05D006757 ORTHO05D004651 1.7e-54 218.4 716 31.4
Cpa.g.sc2.85 Carica papaya HOM05D006757 ORTHO05D004651 5.0e-54 216.9 419 41.5
Nitab4.5_0004543g0020 Nicotiana tabacum HOM05D006757 ORTHO05D004651 5.0e-54 216.9 620 33.7
DCAR_030323 Daucus carota HOM05D006757 ORTHO05D004651 1.1e-53 215.7 625 29.9
Migut.E00572 Erythranthe guttata HOM05D006757 ORTHO05D004651 1.1e-53 215.7 613 32.5
Manes.17G092000 Manihot esculenta HOM05D006757 ORTHO05D004651 1.1e-53 215.7 618 36.1
Phvul.007G020500 Phaseolus vulgaris HOM05D006757 ORTHO05D004651 2.7e-52 211.1 598 33.6
PSO063G3495 Papaver somniferum HOM05D006757 ORTHO05D004651 4.7e-52 210.3 722 31.4
FAN22G1875 Fragaria x ananassa HOM05D006757 ORTHO05D004651 6.1e-52 209.9 762 30.7
arahy.Tifrunner.gnm1.ann1.CLVE3A Arachis hypogaea HOM05D006757 ORTHO05D004651 7.4e-50 203.0 609 32.5
arahy.Tifrunner.gnm1.ann1.18R96V Arachis hypogaea HOM05D006757 ORTHO05D004651 2.8e-49 201.1 609 32.3
Atru.chr11.1028 Acer truncatum HOM05D006757 ORTHO05D004651 1.4e-48 198.7 439 36.9
Eucgr.G02041 Eucalyptus grandis HOM05D006757 ORTHO05D004651 7.0e-48 196.4 651 33.0
SGA_v2.0_scaffold470G52072 Striga asiatica HOM05D006757 ORTHO05D004651 7.7e-47 193.0 786 28.4
unitig_699.g19471 Utricularia gibba HOM05D006757 ORTHO05D004651 1.0e-46 192.6 672 31.2
EL10Ac6g15397 Beta vulgaris HOM05D006757 ORTHO05D004651 2.2e-46 191.4 691 29.8
Cc11_g03340 Coffea canephora HOM05D006757 ORTHO05D004651 6.5e-46 189.9 632 32.8
vmacro10765 Vaccinium macrocarpon HOM05D006757 ORTHO05D004651 5.5e-45 186.8 674 31.0
Potri.010G099300 Populus trichocarpa HOM05D006757 ORTHO05D004651 4.7e-44 183.7 551 34.1
AUR62017786 Chenopodium quinoa HOM05D006757 ORTHO05D004651 3.0e-43 181.0 732 29.1
SalBow2G2705 Salvia bowleyana HOM05D006757 ORTHO05D004651 3.0e-43 181.0 587 33.9
ATR0807G004 Amborella trichopoda HOM05D006757 ORTHO05D004651 1.5e-42 178.7 623 28.7
AUR62003477 Chenopodium quinoa HOM05D006757 ORTHO05D004651 1.8e-40 171.8 479 32.6
Nitab4.5_0000944g0040 Nicotiana tabacum HOM05D006757 ORTHO05D004651 3.5e-39 167.5 593 26.8
Sed0027541 Sechium edule HOM05D006757 ORTHO05D004651 1.3e-38 165.6 577 32.6
CAN.G282.84 Capsicum annuum HOM05D006757 ORTHO05D004651 4.4e-34 150.6 544 31.4
Sc17g0005480 Simmondsia chinensis HOM05D006757 ORTHO05D004651 2.8e-33 147.9 575 31.0
Peaxi162Scf00097g00232 Petunia axillaris HOM05D006757 ORTHO05D004651 2.4e-32 144.8 611 30.0
Os09g0555600 Oryza sativa ssp. japonica HOM05D006757 ORTHO05D004651 7.7e-31 139.8 636 26.7
CSS0036943 Camellia sinensis var. sinensis HOM05D006757 ORTHO05D004651 1.5e-29 135.6 169 48.5
HPP92_025367 Vanilla planifolia HOM05D006757 ORTHO05D004651 4.4e-26 124.0 619 27.6
Oeu001141.1 Olea europaea HOM05D006757 ORTHO05D004651 9.5e-21 106.3 195 39.0
C02p32190 Brassica napus HOM05D006757 ORTHO05D004651 1.9e-16 92.0 61 68.9
Haze_10724 Corylus avellana HOM05D006757 ORTHO05D004651 9.5e-13 79.7 283 29.7
Aa31LG4G5420 Aethionema arabicum HOM05D000736 ORTHO05D002593 2.8e-12 78.2 153 42.5
COL.COLO4_13886 Corchorus olitorius HOM05D003428 ORTHO05D004131 3.6e-12 77.8 135 45.2
Glyma.20G109150 Glycine max HOM05D006757 ORTHO05D004651 2.3e-11 75.1 82 47.6
SEGI_38740 Sequoiadendron giganteum HOM05D006757 ORTHO05D004651 2.2e-09 68.6 81 46.9
SalBow2G2121 Salvia bowleyana HOM05D006757 ORTHO05D004651 2.9e-09 68.2 180 29.4
Mapoly0058s0047 Marchantia polymorpha HOM05D006757 ORTHO05D004651 2.1e-07 62.0 643 24.3
CDE04G1248 Ceratophyllum demersum HOM05D006757 ORTHO05D004651 1.3e-06 59.3 62 53.2
Cc11_g03350 Coffea canephora HOM05D006757 ORTHO05D004651 2.3e-06 58.5 68 45.6


User provided reference genes

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