Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung05788 Brassica carinata HOM05D000754 ORTHO05D000169 3.3e-133 478.4 243 100.0
BolC1t00145H Brassica oleracea HOM05D000754 ORTHO05D000169 1.6e-108 396.4 248 83.9
C01p01480 Brassica napus HOM05D000754 ORTHO05D000169 1.8e-107 392.9 248 83.9
A01p01320 Brassica napus HOM05D000754 ORTHO05D000169 7.1e-104 380.9 242 82.6
BraA01t00129Z Brassica rapa HOM05D000754 ORTHO05D000169 7.1e-104 380.9 242 82.6
Sp7g35380 Schrenkiella parvula HOM05D000754 ORTHO05D000169 6.9e-91 337.8 244 75.4
AT4G37730 Arabidopsis thaliana HOM05D000754 ORTHO05D000169 2.7e-87 325.9 243 72.0
Thhalv10027117m.g Eutrema salsugineum HOM05D000754 ORTHO05D000169 2.3e-86 322.8 244 73.4
AL7G12950 Arabidopsis lyrata HOM05D000754 ORTHO05D000169 1.5e-85 320.1 243 71.6
BcaC06g33372 Brassica carinata HOM05D000754 ORTHO05D000169 8.1e-84 314.3 244 69.7
CARHR246120 Cardamine hirsuta HOM05D000754 ORTHO05D000169 5.3e-83 311.6 243 71.2
Carub.0007s0252 Capsella rubella HOM05D000754 ORTHO05D000169 3.8e-81 305.4 243 70.4
C07p62610 Brassica napus HOM05D000754 ORTHO05D000169 9.3e-80 300.8 246 67.5
A03p65530 Brassica napus HOM05D000754 ORTHO05D000169 1.9e-77 293.1 244 66.4
Sp4g01890 Schrenkiella parvula HOM05D000754 ORTHO05D000169 6.7e-54 214.9 237 53.2
SpUn0042_0040 Schrenkiella parvula HOM05D000754 ORTHO05D000169 6.7e-54 214.9 237 53.2
Aa31LG6G14610 Aethionema arabicum HOM05D000754 ORTHO05D000169 3.3e-53 212.6 243 55.6
Thhalv10000309m.g Eutrema salsugineum HOM05D000754 ORTHO05D000169 3.7e-52 209.1 245 51.0
AL4G12430 Arabidopsis lyrata HOM05D000754 ORTHO05D000169 5.3e-51 205.3 240 52.1
AT2G22850 Arabidopsis thaliana HOM05D000754 ORTHO05D000169 7.7e-50 201.4 240 52.5
CARHR114160 Cardamine hirsuta HOM05D000754 ORTHO05D000169 1.9e-48 196.8 235 51.9
THA.LOC104804197 Tarenaya hassleriana HOM05D000754 ORTHO05D000169 1.9e-40 170.2 254 48.8
Carub.0004s0198 Capsella rubella HOM05D000754 ORTHO05D000169 1.2e-39 167.5 229 48.5
MD02G1189300 Malus domestica HOM05D000754 ORTHO05D000169 3.6e-23 112.8 224 42.0
QL06p038974 Quercus lobata HOM05D000754 ORTHO05D000169 6.8e-22 108.6 225 39.1
Duzib147G0338 Durio zibethinus HOM05D000754 ORTHO05D000169 4.4e-21 105.9 240 37.9
Duzib187G1715 Durio zibethinus HOM05D000754 ORTHO05D000169 5.7e-21 105.5 244 38.9
TWI74G1229 Tripterygium wilfordii HOM05D000754 ORTHO05D000169 9.8e-21 104.8 226 37.6
Cpa.g.sc129.74 Carica papaya HOM05D000754 ORTHO05D000169 2.2e-20 103.6 225 39.1
Potri.007G006900 Populus trichocarpa HOM05D000754 ORTHO05D000169 2.2e-20 103.6 225 40.4
THA.LOC104827731 Tarenaya hassleriana HOM05D000754 ORTHO05D000169 2.2e-20 103.6 245 34.3
Manes.13G109400 Manihot esculenta HOM05D000754 ORTHO05D000169 3.7e-20 102.8 226 38.1
Gohir.D03G030500 Gossypium hirsutum HOM05D000754 ORTHO05D000169 8.3e-20 101.7 225 35.6
Duzib264G0179 Durio zibethinus HOM05D000754 ORTHO05D000169 1.1e-19 101.3 247 37.2
FAN26G0075 Fragaria x ananassa HOM05D000754 ORTHO05D000169 2.4e-19 100.1 228 39.0
Gohir.A11G048900 Gossypium hirsutum HOM05D000754 ORTHO05D000169 2.4e-19 100.1 246 37.4
Prupe.6G217300 Prunus persica HOM05D000754 ORTHO05D000169 3.2e-19 99.8 250 36.8
Gorai.003G032100 Gossypium raimondii HOM05D000754 ORTHO05D000169 4.1e-19 99.4 225 35.1
COL.COLO4_11611 Corchorus olitorius HOM05D000754 ORTHO05D000169 5.4e-19 99.0 243 35.4
Lj4g0006564 Lotus japonicus HOM05D000754 ORTHO05D000169 9.2e-19 98.2 214 35.5
Gohir.D11G052500 Gossypium hirsutum HOM05D000754 ORTHO05D000169 1.2e-18 97.8 246 37.0
Potri.014G007100 Populus trichocarpa HOM05D000754 ORTHO05D000169 1.2e-18 97.8 225 38.7
Gohir.A02G149900 Gossypium hirsutum HOM05D000754 ORTHO05D000169 2.7e-18 96.7 225 35.1
FAN19G0912 Fragaria x ananassa HOM05D000754 ORTHO05D000169 3.5e-18 96.3 228 37.3
Gorai.007G056900 Gossypium raimondii HOM05D000754 ORTHO05D000169 3.5e-18 96.3 246 36.6
Thecc.01G075900 Theobroma cacao HOM05D000754 ORTHO05D000169 3.5e-18 96.3 243 35.4
MD15G1300200 Malus domestica HOM05D000754 ORTHO05D000169 1.0e-17 94.7 224 37.1
FAN28G2566 Fragaria x ananassa HOM05D000754 ORTHO05D000169 1.3e-17 94.4 228 38.2
Gohir.D12G076700 Gossypium hirsutum HOM05D000754 ORTHO05D000169 2.3e-17 93.6 145 46.2
FAN23G2905 Fragaria x ananassa HOM05D000754 ORTHO05D000169 5.0e-17 92.4 226 36.7
Atru.chr3.1056 Acer truncatum HOM05D000754 ORTHO05D000169 6.6e-17 92.0 125 49.6
TPR.G3728 Trifolium pratense HOM05D000754 ORTHO05D000169 6.6e-17 92.0 223 34.5
arahy.Tifrunner.gnm1.ann1.JTRU7S Arachis hypogaea HOM05D000754 ORTHO05D000169 8.6e-17 91.7 113 47.8
arahy.Tifrunner.gnm1.ann1.449CV2 Arachis hypogaea HOM05D000754 ORTHO05D000169 1.5e-16 90.9 114 47.4
Medtr4g097440 Medicago truncatula HOM05D000754 ORTHO05D000169 1.5e-16 90.9 127 44.1
Nitab4.5_0006965g0010 Nicotiana tabacum HOM05D000754 ORTHO05D000169 1.5e-16 90.9 254 35.0
Gorai.008G085300 Gossypium raimondii HOM05D000754 ORTHO05D000169 3.3e-16 89.7 136 46.3
Psat0ss26165g0040 Pisum sativum HOM05D000754 ORTHO05D000169 3.3e-16 89.7 223 35.4
Aa31LG7G13950 Aethionema arabicum HOM05D000754 ORTHO05D000169 4.3e-16 89.4 318 31.1
Migut.H00326 Erythranthe guttata HOM05D000754 ORTHO05D000169 4.3e-16 89.4 227 33.5
Ciclev10027584m.g Citrus clementina HOM05D000754 ORTHO05D000169 5.6e-16 89.0 138 47.8
CANSAT01G0483 Cannabis sativa HOM05D000754 ORTHO05D000169 1.2e-15 87.8 230 36.1
RcHm_v2.0_Chr2g0108691 Rosa chinensis HOM05D000754 ORTHO05D000169 1.2e-15 87.8 120 50.0
Lsat_1_v5_gn_2_80220 Lactuca sativa HOM05D000754 ORTHO05D000169 2.8e-15 86.7 142 44.4
Sabra14G0006500 Salix brachista HOM05D000754 ORTHO05D000169 2.8e-15 86.7 209 36.4
Hma1.2p1_1139F.1_g260890 Hydrangea macrophylla HOM05D000754 ORTHO05D000169 3.6e-15 86.3 245 35.9
Glyma.01G195800 Glycine max HOM05D000754 ORTHO05D000169 4.7e-15 85.9 145 39.3
Glyma.05G108200 Glycine max HOM05D000754 ORTHO05D000169 6.1e-15 85.5 148 40.5
CiPaw.01G002300 Carya illinoinensis HOM05D000754 ORTHO05D000169 8.0e-15 85.1 89 57.3
Lj7P112T12 Lonicera japonica HOM05D000754 ORTHO05D000169 1.0e-14 84.7 90 57.8
Gorai.008G085200 Gossypium raimondii HOM05D000754 ORTHO05D000169 1.4e-14 84.3 136 44.9
CSS0034114 Camellia sinensis var. sinensis HOM05D000754 ORTHO05D000169 1.8e-14 84.0 224 33.5
Gohir.A12G078400 Gossypium hirsutum HOM05D000754 ORTHO05D000169 5.2e-14 82.4 154 40.3
Aqoxy6G02482 Aquilegia oxysepala HOM05D000754 ORTHO05D000169 6.8e-14 82.0 113 49.6
MELO3C007655.2 Cucumis melo HOM05D000754 ORTHO05D000169 6.8e-14 82.0 146 41.1
Gohir.D12G076600 Gossypium hirsutum HOM05D000754 ORTHO05D000169 6.8e-14 82.0 134 42.5
Oeu013337.1 Olea europaea HOM05D000754 ORTHO05D000169 8.9e-14 81.6 228 33.3
Glyma.17G158900 Glycine max HOM05D000754 ORTHO05D000169 1.5e-13 80.9 136 40.4
Lj4P165T20 Lonicera japonica HOM05D000754 ORTHO05D000169 1.5e-13 80.9 95 53.7
MBI16_g45152_MAGBIO Magnolia biondii HOM05D000754 ORTHO05D000169 2.0e-13 80.5 92 54.3
Manes.12G117300 Manihot esculenta HOM05D000754 ORTHO05D000169 2.0e-13 80.5 91 54.9
Gohir.A12G080000 Gossypium hirsutum HOM05D000754 ORTHO05D000169 3.4e-13 79.7 136 43.4
Cfa004385 Carpinus fangiana HOM05D000754 ORTHO05D000169 4.4e-13 79.3 89 56.2
THA.LOC104819272 Tarenaya hassleriana HOM05D000754 ORTHO05D000169 5.8e-13 79.0 245 33.1
CsaV3_6G044300 Cucumis sativus L. HOM05D000754 ORTHO05D000169 7.5e-13 78.6 141 40.4
AL334U10020 Arabidopsis lyrata HOM05D000754 ORTHO05D000169 9.8e-13 78.2 240 30.8
Oeu032433.1 Olea europaea HOM05D000754 ORTHO05D000169 1.3e-12 77.8 225 36.0
Ah.03g140650 Amaranthus hybridus HOM05D000754 ORTHO05D000169 2.2e-12 77.0 226 34.5
CSS0007195 Camellia sinensis var. sinensis HOM05D000754 ORTHO05D000169 2.2e-12 77.0 89 56.2
Glyma.11G045900 Glycine max HOM05D000754 ORTHO05D000169 2.2e-12 77.0 125 38.4
Carub.0008s2675 Capsella rubella HOM05D000754 ORTHO05D000169 2.9e-12 76.6 234 29.9
vmacro23300 Vaccinium macrocarpon HOM05D000754 ORTHO05D000169 3.7e-12 76.3 255 32.2
CSS0026493 Camellia sinensis var. sinensis HOM05D000754 ORTHO05D000169 4.9e-12 75.9 89 55.1
DCAR_010801 Daucus carota HOM05D000754 ORTHO05D000169 4.9e-12 75.9 90 52.2
CARHR279860 Cardamine hirsuta HOM05D000754 ORTHO05D000169 6.4e-12 75.5 225 31.6
Sc03g0002510 Simmondsia chinensis HOM05D000697 ORTHO05D000169 6.4e-12 75.5 92 53.3
Phvul.002G009200 Phaseolus vulgaris HOM05D000754 ORTHO05D000169 1.1e-11 74.7 128 39.1
AL8G43580 Arabidopsis lyrata HOM05D000754 ORTHO05D000169 1.4e-11 74.3 227 30.0
Eucgr.H02330 Eucalyptus grandis HOM05D000754 ORTHO05D000169 1.4e-11 74.3 215 33.0
SalBow3G0289 Salvia bowleyana HOM05D000754 ORTHO05D000169 1.4e-11 74.3 89 53.9
TPR.G9335 Trifolium pratense HOM05D000754 ORTHO05D000169 1.4e-11 74.3 126 38.1
Sp5g12320 Schrenkiella parvula HOM05D000754 ORTHO05D000169 1.9e-11 73.9 228 29.8
Lalb_Chr09g0323741 Lupinus albus HOM05D000754 ORTHO05D000169 2.4e-11 73.6 128 39.1
ClCG01G017780 Citrullus lanatus HOM05D000754 ORTHO05D000169 3.2e-11 73.2 136 41.2
Cc07_g07330 Coffea canephora HOM05D000754 ORTHO05D000169 4.1e-11 72.8 220 33.2
Nn6g34519 Nelumbo nucifera HOM05D000754 ORTHO05D000169 4.1e-11 72.8 141 41.1
Phvul.003G233200 Phaseolus vulgaris HOM05D000754 ORTHO05D000169 4.1e-11 72.8 117 40.2
DCAR_025821 Daucus carota HOM05D000754 ORTHO05D000169 5.4e-11 72.4 90 53.3
Lsat_1_v5_gn_3_86301 Lactuca sativa HOM05D000754 ORTHO05D000169 5.4e-11 72.4 158 38.6
TAR628G1392 Trochodendron aralioides HOM05D000754 ORTHO05D000169 5.4e-11 72.4 107 46.7
vmacro18014 Vaccinium macrocarpon HOM05D000754 ORTHO05D000169 7.0e-11 72.0 85 52.9
Sc07g0000450 Simmondsia chinensis HOM05D000754 ORTHO05D000169 2.0e-10 70.5 223 34.5
PGSC0003DMG400005476 Solanum tuberosum HOM05D000697 ORTHO05D000169 2.0e-10 70.5 125 46.4
VMungo1215G0337 Vigna mungo HOM05D000754 ORTHO05D000169 2.0e-10 70.5 81 46.9
Lalb_Chr16g0378971 Lupinus albus HOM05D000754 ORTHO05D000169 2.7e-10 70.1 122 39.3
TAR376G1084 Trochodendron aralioides HOM05D000754 ORTHO05D000169 2.7e-10 70.1 133 42.9
AUR62004028 Chenopodium quinoa HOM05D000754 ORTHO05D000169 3.5e-10 69.7 147 42.2
Hma1.2p1_0424F.1_g150490 Hydrangea macrophylla HOM05D000754 ORTHO05D000169 3.5e-10 69.7 89 50.6
Medtr5g015090 Medicago truncatula HOM05D000754 ORTHO05D000169 4.6e-10 69.3 126 37.3
Nn5g30657 Nelumbo nucifera HOM05D000754 ORTHO05D000169 4.6e-10 69.3 89 50.6
VMungo0251G0820 Vigna mungo HOM05D000754 ORTHO05D000169 4.6e-10 69.3 117 40.2
Rhsim08G0090600 Rhododendron simsii HOM05D000754 ORTHO05D000169 6.0e-10 68.9 250 30.0
Rhsim08G0091200 Rhododendron simsii HOM05D000754 ORTHO05D000169 6.0e-10 68.9 250 30.4
unitig_52.g17604 Utricularia gibba HOM05D000754 ORTHO05D000169 6.0e-10 68.9 124 42.7
SGA_v2.0_scaffold15G07496 Striga asiatica HOM05D000754 ORTHO05D000169 7.8e-10 68.6 237 31.2
CARHR158850 Cardamine hirsuta HOM05D000754 ORTHO05D000169 1.7e-09 67.4 224 29.9
Duzib264G0228 Durio zibethinus HOM05D007433 ORTHO05D000169 1.7e-09 67.4 126 42.9
HanXRQChr14g0445391 Helianthus annuus HOM05D000754 ORTHO05D000169 2.3e-09 67.0 159 36.5
Sabra07G0005200 Salix brachista HOM05D000754 ORTHO05D000169 2.3e-09 67.0 220 33.6
Dinv26956 Davidia involucrata HOM05D000754 ORTHO05D000169 3.0e-09 66.6 114 44.7
Psat2g172480 Pisum sativum HOM05D000754 ORTHO05D000169 3.0e-09 66.6 130 36.2
vmacro23468 Vaccinium macrocarpon HOM05D000754 ORTHO05D000169 3.0e-09 66.6 239 31.8
Ah.02g125320 Amaranthus hybridus HOM05D000754 ORTHO05D000169 3.9e-09 66.2 116 43.1
PGR004G2429 Punica granatum HOM05D000754 ORTHO05D000169 5.0e-09 65.9 82 51.2
unitig_62.g23429 Utricularia gibba HOM05D000754 ORTHO05D000169 5.0e-09 65.9 92 48.9
HanXRQChr12g0376421 Helianthus annuus HOM05D000754 ORTHO05D000169 8.6e-09 65.1 112 44.6
Thhalv10010997m.g Eutrema salsugineum HOM05D000754 ORTHO05D000169 1.5e-08 64.3 218 29.4
MSTRG.2807 Avicennia marina HOM05D000754 ORTHO05D000169 1.9e-08 63.9 85 45.9
Oeu033308.1 Olea europaea HOM05D000754 ORTHO05D000169 1.9e-08 63.9 131 40.5
BraA09t39758Z Brassica rapa HOM05D000754 ORTHO05D000169 2.5e-08 63.5 90 43.3
Carub.0005s1612 Capsella rubella HOM05D000754 ORTHO05D000169 2.5e-08 63.5 116 37.9
Thhalv10005352m.g Eutrema salsugineum HOM05D000754 ORTHO05D000169 2.5e-08 63.5 93 43.0
HanXRQChr07g0189251 Helianthus annuus HOM05D000754 ORTHO05D000169 2.5e-08 63.5 137 38.7
C08p24780 Brassica napus HOM05D000754 ORTHO05D000169 7.3e-08 62.0 90 43.3
AT3G49760 Arabidopsis thaliana HOM05D000754 ORTHO05D000169 1.6e-07 60.8 104 39.4
BcaC07g39440 Brassica carinata HOM05D000754 ORTHO05D000169 1.6e-07 60.8 90 42.2
A09p42900 Brassica napus HOM05D000754 ORTHO05D000169 2.1e-07 60.5 90 43.3
BolC8t50093H Brassica oleracea HOM05D000754 ORTHO05D000169 2.1e-07 60.5 90 42.2
BcaB05g23150 Brassica carinata HOM05D000754 ORTHO05D000169 4.7e-07 59.3 126 34.1
MD08G1078800 Malus domestica HOM05D000754 ORTHO05D000169 4.7e-07 59.3 94 46.8
THA.LOC104816762 Tarenaya hassleriana HOM05D000754 ORTHO05D000169 4.7e-07 59.3 116 42.2
Lsat_1_v5_gn_4_159740 Lactuca sativa HOM05D000754 ORTHO05D000169 6.2e-07 58.9 151 36.4
Dinv23041 Davidia involucrata HOM05D000754 ORTHO05D000169 8.0e-07 58.5 85 51.8
Aa31LG2G10600 Aethionema arabicum HOM05D000754 ORTHO05D000169 1.4e-06 57.8 95 42.1
Gohir.A09G054200 Gossypium hirsutum HOM05D000754 ORTHO05D000169 1.4e-06 57.8 129 39.5
A02p44090 Brassica napus HOM05D000754 ORTHO05D000169 2.3e-06 57.0 249 26.9
BraA02t09332Z Brassica rapa HOM05D000754 ORTHO05D000169 2.3e-06 57.0 249 26.9
ClCG08G016680 Citrullus lanatus HOM05D000754 ORTHO05D000169 2.3e-06 57.0 86 48.8
Dinv44934 Davidia involucrata HOM05D005471 ORTHO05D006170 3.1e-06 56.6 109 44.0
Lalb_Chr14g0368081 Lupinus albus HOM05D000754 ORTHO05D000169 3.1e-06 56.6 100 42.0
C03p59810 Brassica napus HOM05D000754 ORTHO05D000169 4.0e-06 56.2 219 30.6
BolC3t18244H Brassica oleracea HOM05D000754 ORTHO05D000169 4.0e-06 56.2 219 30.6
COL.COLO4_25979 Corchorus olitorius HOM05D000697 ORTHO05D000169 4.0e-06 56.2 106 41.5
Prupe.1G374400 Prunus persica HOM05D000697 ORTHO05D000169 4.0e-06 56.2 110 39.1
CSS0028165 Camellia sinensis var. sinensis HOM05D000697 ORTHO05D000169 5.2e-06 55.8 101 40.6
Potri.014G013400 Populus trichocarpa HOM05D000754 ORTHO05D000169 6.8e-06 55.5 92 44.6
Aa31LG4G18250 Aethionema arabicum HOM05D000754 ORTHO05D000169 8.9e-06 55.1 138 33.3
Ah.07g204400 Amaranthus hybridus HOM05D000697 ORTHO05D000169 8.9e-06 55.1 99 39.4


User provided reference genes

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