Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung05691 Brassica carinata HOM05D004776 ORTHO05D005777 1.4e-232 809.3 426 100.0
C04p17380 Brassica napus HOM05D004776 ORTHO05D005777 1.0e-206 723.4 441 90.0
BcaC02g11340 Brassica carinata HOM05D004776 ORTHO05D005777 1.1e-197 693.3 425 89.9
BolC4t23289H Brassica oleracea HOM05D004776 ORTHO05D005777 2.5e-197 692.2 425 89.6
A05p13030 Brassica napus HOM05D004776 ORTHO05D005777 2.2e-193 679.1 441 85.7
BraA05t20243Z Brassica rapa HOM05D004776 ORTHO05D005777 4.3e-189 664.8 425 86.4
Thhalv10002461m.g Eutrema salsugineum HOM05D004776 ORTHO05D005777 1.9e-173 612.8 429 80.0
Sp5g16230 Schrenkiella parvula HOM05D004776 ORTHO05D005777 1.9e-173 612.8 429 79.5
BcaC09g49697 Brassica carinata HOM05D004776 ORTHO05D005777 3.7e-172 608.6 416 79.3
AT3G45040 Arabidopsis thaliana HOM05D004776 ORTHO05D005777 1.8e-171 606.3 417 80.6
BolC1t03347H Brassica oleracea HOM05D004776 ORTHO05D005777 2.4e-171 605.9 416 79.6
AL5G23530 Arabidopsis lyrata HOM05D004776 ORTHO05D005777 8.4e-169 597.4 417 79.9
C01p33820 Brassica napus HOM05D004776 ORTHO05D005777 1.9e-168 596.3 441 75.3
Carub.0005s1082 Capsella rubella HOM05D004776 ORTHO05D005777 1.2e-167 593.6 417 78.2
BcaB05g23422 Brassica carinata HOM05D004776 ORTHO05D005777 6.7e-166 587.8 427 76.6
CARHR150930 Cardamine hirsuta HOM05D004776 ORTHO05D005777 3.1e-163 578.9 394 80.5
A01p26580 Brassica napus HOM05D004776 ORTHO05D005777 2.3e-158 562.8 414 75.4
BraA01t02588Z Brassica rapa HOM05D004776 ORTHO05D005777 5.7e-157 558.1 415 75.2
THA.LOC104799516 Tarenaya hassleriana HOM05D004776 ORTHO05D005777 4.7e-151 538.5 431 68.2
Cfa010344 Carpinus fangiana HOM05D004776 ORTHO05D005777 2.7e-114 416.4 395 58.0
Gohir.D03G137500 Gossypium hirsutum HOM05D004776 ORTHO05D005777 6.6e-113 411.8 394 56.3
QL01p015865 Quercus lobata HOM05D004776 ORTHO05D005777 1.1e-112 411.0 397 58.4
Gorai.003G144600 Gossypium raimondii HOM05D004776 ORTHO05D005777 4.3e-112 409.1 394 56.1
Gorai.013G268700 Gossypium raimondii HOM05D004776 ORTHO05D005777 5.6e-112 408.7 394 57.1
Thecc.09G348100 Theobroma cacao HOM05D004776 ORTHO05D005777 5.2e-110 402.1 394 56.3
Ciclev10028099m.g Citrus clementina HOM05D004776 ORTHO05D005777 3.4e-109 399.4 394 57.4
Dinv29356 Davidia involucrata HOM05D004776 ORTHO05D006187 7.5e-109 398.3 433 52.7
RcHm_v2.0_Chr2g0122071 Rosa chinensis HOM05D004776 ORTHO05D005777 2.4e-107 393.3 394 56.9
CANSAT54G2950 Cannabis sativa HOM05D004776 ORTHO05D005777 4.1e-107 392.5 399 57.6
CiPaw.13G118600 Carya illinoinensis HOM05D004776 ORTHO05D005777 7.0e-107 391.7 396 56.6
MD11G1145200 Malus domestica HOM05D004776 ORTHO05D005777 7.0e-107 391.7 393 56.7
Manes.04G015500 Manihot esculenta HOM05D004776 ORTHO05D005777 7.0e-107 391.7 390 56.9
CSS0005795 Camellia sinensis var. sinensis HOM05D004776 ORTHO05D005777 1.0e-105 387.9 395 55.2
CSS0042525 Camellia sinensis var. sinensis HOM05D004776 ORTHO05D005777 1.3e-105 387.5 395 55.2
Hma1.2p1_0569F.1_g180290 Hydrangea macrophylla HOM05D004776 ORTHO05D005777 1.1e-104 384.4 394 53.3
FvH4_1g24650 Fragaria vesca HOM05D004776 ORTHO05D005777 2.5e-104 383.3 393 56.0
Prupe.6G108100 Prunus persica HOM05D004776 ORTHO05D005777 1.4e-102 377.5 394 54.8
FAN26G3463 Fragaria x ananassa HOM05D004776 ORTHO05D005777 3.1e-102 376.3 401 55.1
COL.COLO4_34701 Corchorus olitorius HOM05D004776 ORTHO05D005777 4.0e-102 375.9 349 57.3
CsaV3_1G013400 Cucumis sativus L. HOM05D004776 ORTHO05D005777 6.8e-102 375.2 393 54.5
GSVIVG01031509001 Vitis vinifera HOM05D004776 ORTHO05D005777 8.9e-102 374.8 396 53.8
Lalb_Chr03g0027621 Lupinus albus HOM05D004776 ORTHO05D005777 1.2e-101 374.4 390 53.1
FAN28G2552 Fragaria x ananassa HOM05D004776 ORTHO05D005777 1.5e-101 374.0 401 54.9
FAN19G0403 Fragaria x ananassa HOM05D004776 ORTHO05D005777 2.6e-101 373.2 400 54.2
TWI31G0757 Tripterygium wilfordii HOM05D004776 ORTHO05D005777 7.5e-101 371.7 395 52.9
Haze_23751 Corylus avellana HOM05D004776 ORTHO05D005777 9.8e-101 371.3 413 52.3
Potri.009G007900 Populus trichocarpa HOM05D004776 ORTHO05D005777 1.3e-100 370.9 387 55.8
Duzib168G1494 Durio zibethinus HOM05D004776 ORTHO05D005777 2.2e-100 370.2 363 56.7
FAN23G0844 Fragaria x ananassa HOM05D004776 ORTHO05D005777 2.2e-100 370.2 431 53.1
PGSC0003DMG400007163 Solanum tuberosum HOM05D004776 ORTHO05D005777 2.2e-100 370.2 392 54.6
Sed0027733 Sechium edule HOM05D004776 ORTHO05D005777 4.9e-100 369.0 393 53.7
TWI79G1687 Tripterygium wilfordii HOM05D004776 ORTHO05D005777 2.1e-98 363.6 397 53.4
TAR623G0387 Trochodendron aralioides HOM05D004776 ORTHO05D005777 4.6e-98 362.5 399 53.6
Solyc06g074960.4 Solanum lycopersicum HOM05D004776 ORTHO05D005777 1.0e-97 361.3 430 50.7
Glyma.12G177300 Glycine max HOM05D004776 ORTHO05D005777 1.3e-97 360.9 387 52.5
Gohir.D13G237900 Gossypium hirsutum HOM05D004776 ORTHO05D005777 1.7e-97 360.5 365 55.1
Lj3g0025221 Lotus japonicus HOM05D004776 ORTHO05D005777 3.9e-97 359.4 386 53.4
Duzib170G0082 Durio zibethinus HOM05D004776 ORTHO05D005777 5.1e-97 359.0 394 52.8
Nn2g11574 Nelumbo nucifera HOM05D004776 ORTHO05D005777 6.6e-97 358.6 399 49.9
Glyma.13G323400 Glycine max HOM05D004776 ORTHO05D005777 8.6e-97 358.2 388 52.3
CAN.G1755.5 Capsicum annuum HOM05D004776 ORTHO05D005777 1.1e-96 357.8 419 51.8
PGR102G1642 Punica granatum HOM05D004776 ORTHO05D005777 3.6e-95 352.8 391 49.6
vmacro14409 Vaccinium macrocarpon HOM05D004776 ORTHO05D005777 6.2e-95 352.1 398 52.3
Sabra09G0004700 Salix brachista HOM05D004776 ORTHO05D005777 1.4e-94 350.9 387 53.0
Phvul.005G131900 Phaseolus vulgaris HOM05D004776 ORTHO05D005777 1.8e-94 350.5 418 50.0
arahy.Tifrunner.gnm1.ann1.69IQEU Arachis hypogaea HOM05D004776 ORTHO05D005777 2.3e-94 350.1 389 51.9
Medtr2g095420 Medicago truncatula HOM05D004776 ORTHO05D005777 2.3e-94 350.1 386 51.0
Actinidia20436 Actinidia chinensis HOM05D004776 ORTHO05D005777 2.6e-93 346.7 402 51.2
Cpa.g.sc1.24 Carica papaya HOM05D004776 ORTHO05D005777 2.6e-93 346.7 391 52.7
Psat0s3241g0040 Pisum sativum HOM05D004776 ORTHO05D005777 2.6e-93 346.7 387 51.4
TPR.G11629 Trifolium pratense HOM05D004776 ORTHO05D005777 2.6e-93 346.7 384 50.0
VMungo1080G0818 Vigna mungo HOM05D004776 ORTHO05D006187 2.6e-93 346.7 390 52.1
arahy.Tifrunner.gnm1.ann1.K18VCE Arachis hypogaea HOM05D004776 ORTHO05D005777 5.8e-93 345.5 389 51.2
ClCG03G002670 Citrullus lanatus HOM05D004776 ORTHO05D005777 5.8e-93 345.5 393 51.4
arahy.Tifrunner.gnm1.ann1.UZ8W9W Arachis hypogaea HOM05D004776 ORTHO05D005777 9.9e-93 344.7 389 51.4
Ca_01388_v3 Cicer arietinum L. HOM05D004776 ORTHO05D006187 2.2e-92 343.6 358 53.6
Aqoxy2G01783 Aquilegia oxysepala HOM05D004776 ORTHO05D005777 3.7e-92 342.8 399 49.9
Rhsim01G0212300 Rhododendron simsii HOM05D004776 ORTHO05D005777 6.4e-92 342.0 401 51.4
ECA248G3913 Erigeron canadensis HOM05D004776 ORTHO05D005777 3.2e-91 339.7 393 48.3
HanXRQChr11g0346181 Helianthus annuus HOM05D004776 ORTHO05D005777 3.2e-91 339.7 389 49.9
Lj1A206T59 Lonicera japonica HOM05D004776 ORTHO05D005777 3.0e-89 333.2 355 52.1
Oeu018486.2 Olea europaea HOM05D004776 ORTHO05D005777 8.6e-89 331.6 396 49.7
PSO339G3038 Papaver somniferum HOM05D004776 ORTHO05D005777 5.6e-88 328.9 399 49.6
PSO801G0074 Papaver somniferum HOM05D004776 ORTHO05D005777 8.1e-87 325.1 398 48.5
AUR62014926 Chenopodium quinoa HOM05D004776 ORTHO05D005777 6.8e-86 322.0 389 51.2
MELO3C035466.2 Cucumis melo HOM05D004776 ORTHO05D005777 2.6e-85 320.1 408 49.3
Cc01_g10560 Coffea canephora HOM05D004776 ORTHO05D005777 3.4e-85 319.7 398 47.0
SGA_v2.0_scaffold116G32209 Striga asiatica HOM05D004776 ORTHO05D005777 4.4e-85 319.3 395 47.6
Atru.chr3.3553 Acer truncatum HOM05D004776 ORTHO05D005777 1.3e-84 317.8 313 55.0
AUR62029209 Chenopodium quinoa HOM05D004776 ORTHO05D005777 1.7e-84 317.4 383 49.6
PSO339G3219 Papaver somniferum HOM05D004776 ORTHO05D005777 3.8e-84 316.2 413 47.2
Peaxi162Scf01159g00227 Petunia axillaris HOM05D004776 ORTHO05D005777 3.8e-84 316.2 426 47.9
Migut.N02573 Erythranthe guttata HOM05D004776 ORTHO05D005777 9.2e-83 311.6 390 49.0
Eucgr.B02538 Eucalyptus grandis HOM05D004776 ORTHO05D005777 1.0e-81 308.1 294 53.7
Nitab4.5_0000106g0400 Nicotiana tabacum HOM05D004776 ORTHO05D005777 3.3e-80 303.1 397 48.6
SalBow3G4083 Salvia bowleyana HOM05D004776 ORTHO05D005777 3.3e-80 303.1 404 46.8
AL5G23500 Arabidopsis lyrata HOM05D004776 ORTHO05D005777 5.6e-80 302.4 234 71.4
MSTRG.17776 Avicennia marina HOM05D004776 ORTHO05D005777 6.2e-79 298.9 395 46.3
Sc05g0005060 Simmondsia chinensis HOM05D004776 ORTHO05D005777 5.3e-78 295.8 356 48.3
Hund01475 Selenicereus undatus HOM05D004776 ORTHO05D005777 1.5e-77 294.3 380 47.4
ATR1132G031 Amborella trichopoda HOM05D004776 ORTHO05D005777 4.4e-77 292.7 407 43.0
arahy.Tifrunner.gnm1.ann1.MGN1WG Arachis hypogaea HOM05D004776 ORTHO05D005777 3.8e-76 289.7 407 44.7
PSO063G2354 Papaver somniferum HOM05D004776 ORTHO05D005777 5.1e-73 279.3 285 53.3
Manes.11G150502 Manihot esculenta HOM05D004776 ORTHO05D005777 6.6e-73 278.9 375 46.1
EL10Ac9g22573 Beta vulgaris HOM05D004776 ORTHO05D005777 1.5e-72 277.7 272 55.9
DCAR_006106 Daucus carota HOM05D004776 ORTHO05D005777 1.9e-72 277.3 361 45.7
Lsat_1_v5_gn_1_63021 Lactuca sativa HOM05D004776 ORTHO05D005777 1.3e-71 274.6 396 44.2
BcaNung05690 Brassica carinata HOM05D004776 ORTHO05D005777 4.9e-68 262.7 280 60.7
SEGI_33157 Sequoiadendron giganteum HOM05D004776 ORTHO05D005777 1.2e-66 258.1 394 39.6
MD00G1033900 Malus domestica HOM05D004776 ORTHO05D005777 4.6e-66 256.1 374 44.1
HPP92_025805 Vanilla planifolia HOM05D004776 ORTHO05D005777 1.3e-65 254.6 399 38.6
Gohir.A03G030900 Gossypium hirsutum HOM05D004776 ORTHO05D005777 3.7e-63 246.5 198 61.1
Zm00001eb232190 Zea mays HOM05D004776 ORTHO05D005777 8.1e-63 245.4 398 41.2
SEGI_23621 Sequoiadendron giganteum HOM05D004776 ORTHO05D005777 4.5e-61 239.6 363 39.1
Sopen06g031360 Solanum pennellii HOM05D004776 ORTHO05D005777 1.7e-60 237.7 200 62.0
Actinidia03705 Actinidia chinensis HOM05D004776 ORTHO05D005777 1.1e-59 235.0 312 45.5
MBI18_g20776_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 1.9e-56 224.2 352 42.3
Oeu029897.2 Olea europaea HOM05D004776 ORTHO05D005777 2.0e-53 214.2 195 56.9
unitig_8.g3670 Utricularia gibba HOM05D004776 ORTHO05D005777 7.6e-53 212.2 263 46.8
Nitab4.5_0006015g0020 Nicotiana tabacum HOM05D004776 ORTHO05D005777 1.0e-49 201.8 381 39.1
MBI18_g10191_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 1.5e-48 198.0 182 56.0
Pp3c13_8200 Physcomitrium patens HOM05D004776 ORTHO05D005777 2.3e-33 147.5 396 28.5
Ca_01994_v3 Cicer arietinum L. HOM05D004776 ORTHO05D005777 2.6e-32 144.1 208 44.2
Mapoly0124s0030 Marchantia polymorpha HOM05D004776 ORTHO05D005777 2.4e-30 137.5 364 31.3
Aqoxy3G00574 Aquilegia oxysepala HOM05D004776 ORTHO05D005777 4.1e-30 136.7 94 71.3
AagrBONN_evm.TU.Sc2ySwM_228.5408 Anthoceros agrestis HOM05D004776 ORTHO05D005777 1.5e-29 134.8 444 28.8
Actinidia14011 Actinidia chinensis HOM05D004776 ORTHO05D005777 4.5e-29 133.3 86 80.2
PGR094G0002 Punica granatum HOM05D004776 ORTHO05D005777 5.9e-29 132.9 92 72.8
PGR094G0004 Punica granatum HOM05D004776 ORTHO05D005777 5.9e-29 132.9 92 72.8
CBR_g19018 Chara braunii HOM05D000019 ORTHO05D000002 1.0e-25 122.1 421 27.1
FAN23G0725 Fragaria x ananassa HOM05D004776 ORTHO05D005777 6.8e-17 92.8 95 57.9
MD03G1126100 Malus domestica HOM05D004776 ORTHO05D005777 5.7e-16 89.7 90 56.7
Gohir.A03G030950 Gossypium hirsutum HOM05D004776 ORTHO05D005777 2.2e-15 87.8 143 41.3
MBI18_g43296_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 1.8e-14 84.7 105 42.9
Os02g0142250 Oryza sativa ssp. japonica HOM05D004776 ORTHO05D005777 7.0e-14 82.8 173 36.4
Actinidia03704 Actinidia chinensis HOM05D004776 ORTHO05D005777 3.6e-10 70.5 42 81.0
Os02g0146500 Oryza sativa ssp. japonica HOM05D004776 ORTHO05D005777 2.3e-09 67.8 173 35.8
MD00G1165500 Malus domestica HOM05D004776 ORTHO05D005777 1.2e-08 65.5 63 63.5


User provided reference genes

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