Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung05685 Brassica carinata HOM05D001607 ORTHO05D001893 1.3e-65 253.1 138 100.0
BcaNung05068 Brassica carinata HOM05D001607 ORTHO05D001893 4.1e-56 221.5 168 72.6
C07p50960 Brassica napus HOM05D001607 ORTHO05D001893 4.1e-56 221.5 168 72.6
BolC7t45597H Brassica oleracea HOM05D001607 ORTHO05D001893 4.1e-56 221.5 168 72.6
A03p52520 Brassica napus HOM05D001607 ORTHO05D001893 1.3e-54 216.5 171 70.2
BraA03t14327Z Brassica rapa HOM05D001607 ORTHO05D001893 9.4e-53 210.3 171 68.4
AL7G33300 Arabidopsis lyrata HOM05D001607 ORTHO05D001893 2.1e-52 209.1 171 67.8
AT4G20850 Arabidopsis thaliana HOM05D001607 ORTHO05D001893 2.7e-52 208.8 171 67.3
Carub.0007s2059 Capsella rubella HOM05D001607 ORTHO05D001893 8.0e-52 207.2 172 68.6
Thhalv10024222m.g Eutrema salsugineum HOM05D001607 ORTHO05D001893 5.2e-51 204.5 171 68.4
Sp7g18940 Schrenkiella parvula HOM05D001607 ORTHO05D001893 1.5e-50 203.0 173 65.3
BcaC09g51300 Brassica carinata HOM05D001607 ORTHO05D001893 4.4e-50 201.4 170 65.3
A01p12270 Brassica napus HOM05D001607 ORTHO05D001893 1.3e-49 199.9 185 61.1
BraA01t01171Z Brassica rapa HOM05D001607 ORTHO05D001893 2.8e-49 198.7 185 60.5
C01p14680 Brassica napus HOM05D001607 ORTHO05D001893 4.8e-49 198.0 179 62.0
BolC1t01419H Brassica oleracea HOM05D001607 ORTHO05D001893 4.8e-49 198.0 179 62.0
BcaNung04147 Brassica carinata HOM05D001607 ORTHO05D001893 1.1e-48 196.8 173 65.3
CARHR227400 Cardamine hirsuta HOM05D001607 ORTHO05D001893 2.4e-48 195.7 172 65.7
Aa31LG6G2920 Aethionema arabicum HOM05D001607 ORTHO05D001893 7.7e-47 190.7 144 74.3
THA.LOC104824860 Tarenaya hassleriana HOM05D001607 ORTHO05D001893 8.3e-41 170.6 170 55.3
THA.LOC104824854 Tarenaya hassleriana HOM05D001607 ORTHO05D001893 1.8e-40 169.5 170 55.9
THA.LOC104812206 Tarenaya hassleriana HOM05D001607 ORTHO05D001893 2.0e-39 166.0 171 55.6
ClCG01G004440 Citrullus lanatus HOM05D001607 ORTHO05D001893 2.7e-39 165.6 178 51.7
CsaV3_5G004660 Cucumis sativus L. HOM05D001607 ORTHO05D001893 3.8e-38 161.8 178 51.7
Gohir.A08G099300 Gossypium hirsutum HOM05D001607 ORTHO05D001893 1.9e-37 159.5 188 48.9
Gohir.D08G110708 Gossypium hirsutum HOM05D001607 ORTHO05D001893 3.2e-37 158.7 188 48.9
Gorai.004G118400 Gossypium raimondii HOM05D001607 ORTHO05D001893 3.2e-37 158.7 188 48.9
Ciclev10004167m.g Citrus clementina HOM05D001607 ORTHO05D001893 7.2e-37 157.5 181 49.7
MD07G1272600 Malus domestica HOM05D001607 ORTHO05D001893 6.1e-36 154.5 173 50.3
Potri.012G142200 Populus trichocarpa HOM05D001607 ORTHO05D001893 6.1e-36 154.5 167 50.9
TPR.G8164 Trifolium pratense HOM05D001607 ORTHO05D001893 6.1e-36 154.5 180 48.9
Sed0028131 Sechium edule HOM05D001607 ORTHO05D001893 1.4e-35 153.3 179 48.0
Thecc.03G178600 Theobroma cacao HOM05D001607 ORTHO05D001893 2.3e-35 152.5 184 48.9
Gorai.007G011200 Gossypium raimondii HOM05D001607 ORTHO05D001893 3.0e-35 152.1 176 48.3
COL.COLO4_14332 Corchorus olitorius HOM05D001607 ORTHO05D001893 4.0e-35 151.8 184 46.7
SalBow4G1573 Salvia bowleyana HOM05D001607 ORTHO05D001893 4.0e-35 151.8 177 47.5
CiPaw.04G071800 Carya illinoinensis HOM05D001607 ORTHO05D001893 5.2e-35 151.4 180 47.8
Gohir.A11G010500 Gossypium hirsutum HOM05D001607 ORTHO05D001893 8.8e-35 150.6 176 47.7
Gohir.D11G009700 Gossypium hirsutum HOM05D001607 ORTHO05D001893 8.8e-35 150.6 176 47.7
Prupe.2G295900 Prunus persica HOM05D001607 ORTHO05D001893 1.2e-34 150.2 172 49.4
Sopen03g004450 Solanum pennellii HOM05D001607 ORTHO05D001893 1.5e-34 149.8 165 51.5
Eucgr.A02780 Eucalyptus grandis HOM05D001607 ORTHO05D001893 2.6e-34 149.1 157 49.7
Duzib068G0651 Durio zibethinus HOM05D001607 ORTHO05D001893 3.4e-34 148.7 187 47.6
GSVIVG01028929001 Vitis vinifera HOM05D001607 ORTHO05D001893 4.4e-34 148.3 187 46.5
MELO3C005470.2 Cucumis melo HOM05D001607 ORTHO05D001893 5.7e-34 147.9 201 45.8
Zm00001eb249900 Zea mays HOM05D001607 ORTHO05D001893 5.7e-34 147.9 167 51.5
Potri.015G145300 Populus trichocarpa HOM05D001607 ORTHO05D001893 7.5e-34 147.5 167 49.7
Sabra12G0106800 Salix brachista HOM05D001607 ORTHO05D001893 9.8e-34 147.1 169 48.5
MD01G1203100 Malus domestica HOM05D001607 ORTHO05D001893 1.3e-33 146.7 181 47.0
Peaxi162Scf00444g00722 Petunia axillaris HOM05D001607 ORTHO05D001893 1.3e-33 146.7 177 47.5
SGA_v2.0_scaffold60G21061 Striga asiatica HOM05D001607 ORTHO05D001893 1.3e-33 146.7 176 47.2
Lj1A999G29 Lonicera japonica HOM05D001607 ORTHO05D001893 1.7e-33 146.4 179 48.0
Nitab4.5_0005845g0040 Nicotiana tabacum HOM05D001607 ORTHO05D001893 1.7e-33 146.4 177 47.5
VMungo0464G1130 Vigna mungo HOM05D001607 ORTHO05D001893 1.7e-33 146.4 181 45.9
FvH4_7g29630 Fragaria vesca HOM05D001607 ORTHO05D001893 2.2e-33 146.0 187 48.1
FAN01G0648 Fragaria x ananassa HOM05D001607 ORTHO05D001893 2.2e-33 146.0 187 48.1
FAN06G1924 Fragaria x ananassa HOM05D001607 ORTHO05D001893 2.2e-33 146.0 187 48.1
FAN06G4239 Fragaria x ananassa HOM05D001607 ORTHO05D001893 2.2e-33 146.0 187 48.1
FAN10G2541 Fragaria x ananassa HOM05D001607 ORTHO05D001893 2.2e-33 146.0 187 47.6
Duzib205G1855 Durio zibethinus HOM05D001607 ORTHO05D001893 2.8e-33 145.6 187 47.6
Cfa022712 Carpinus fangiana HOM05D001607 ORTHO05D001893 3.7e-33 145.2 188 46.3
FAN10G1529 Fragaria x ananassa HOM05D001607 ORTHO05D001893 3.7e-33 145.2 187 47.6
Manes.06G148500 Manihot esculenta HOM05D001607 ORTHO05D001893 3.7e-33 145.2 188 44.7
CAN.G307.23 Capsicum annuum HOM05D001607 ORTHO05D001893 4.9e-33 144.8 177 45.8
Glyma.09G137200 Glycine max HOM05D001607 ORTHO05D001893 6.3e-33 144.4 187 44.9
PGR042G0514 Punica granatum HOM05D001607 ORTHO05D001893 6.3e-33 144.4 184 45.7
FAN03G1039 Fragaria x ananassa HOM05D001607 ORTHO05D001893 8.3e-33 144.1 187 47.6
DCAR_001509 Daucus carota HOM05D001607 ORTHO05D001893 1.1e-32 143.7 177 46.3
FAN03G1056 Fragaria x ananassa HOM05D001607 ORTHO05D001893 1.1e-32 143.7 188 47.3
TAR375G0166 Trochodendron aralioides HOM05D001607 ORTHO05D001893 1.1e-32 143.7 188 44.1
Actinidia25880 Actinidia chinensis HOM05D001607 ORTHO05D001893 1.4e-32 143.3 182 45.6
MSTRG.27107 Avicennia marina HOM05D001607 ORTHO05D001893 1.4e-32 143.3 177 46.3
Cpa.g.sc107.64 Carica papaya HOM05D001607 ORTHO05D001893 1.4e-32 143.3 180 45.6
Migut.F00330 Erythranthe guttata HOM05D001607 ORTHO05D001893 1.4e-32 143.3 177 44.1
Sc25g0000580 Simmondsia chinensis HOM05D001607 ORTHO05D001893 1.4e-32 143.3 177 48.0
RcHm_v2.0_Chr1g0377641 Rosa chinensis HOM05D001607 ORTHO05D001893 2.4e-32 142.5 187 45.5
CSS0006931 Camellia sinensis var. sinensis HOM05D001607 ORTHO05D001893 3.1e-32 142.1 189 43.9
Medtr0025s0060 Medicago truncatula HOM05D001607 ORTHO05D001893 4.1e-32 141.7 189 43.9
Os02g0664300 Oryza sativa ssp. japonica HOM05D001607 ORTHO05D001893 4.1e-32 141.7 167 47.3
SGA_v2.0_scaffold44G16733 Striga asiatica HOM05D001607 ORTHO05D001893 9.1e-32 140.6 176 43.8
Lj5g0010480 Lotus japonicus HOM05D001607 ORTHO05D001893 1.2e-31 140.2 187 43.9
Lalb_Chr19g0130771 Lupinus albus HOM05D001607 ORTHO05D001893 1.6e-31 139.8 200 42.5
Glyma.16G182500 Glycine max HOM05D001607 ORTHO05D001893 2.0e-31 139.4 187 43.3
Atru.chr1.433 Acer truncatum HOM05D001607 ORTHO05D001893 3.5e-31 138.7 193 43.0
Aqoxy1G00239 Aquilegia oxysepala HOM05D001607 ORTHO05D001893 3.5e-31 138.7 187 43.9
Lj2g0000053 Lotus japonicus HOM05D001607 ORTHO05D001893 3.5e-31 138.7 199 42.2
Eucgr.A02778 Eucalyptus grandis HOM05D001607 ORTHO05D001893 4.5e-31 138.3 188 44.1
Nn1g01507 Nelumbo nucifera HOM05D001607 ORTHO05D001893 4.5e-31 138.3 188 41.5
Psat0s3405g0080 Pisum sativum HOM05D001607 ORTHO05D001893 5.9e-31 137.9 188 44.1
Psat6g198240 Pisum sativum HOM05D001607 ORTHO05D001893 7.7e-31 137.5 184 43.5
Actinidia34121 Actinidia chinensis HOM05D001607 ORTHO05D001893 1.0e-30 137.1 200 42.0
arahy.Tifrunner.gnm1.ann1.CMMP9X Arachis hypogaea HOM05D001607 ORTHO05D001893 1.0e-30 137.1 174 44.8
CANSAT21G1423 Cannabis sativa HOM05D001607 ORTHO05D001893 1.0e-30 137.1 201 41.8
AUR62015965 Chenopodium quinoa HOM05D001607 ORTHO05D001893 1.3e-30 136.7 178 42.1
Phvul.004G114200 Phaseolus vulgaris HOM05D001607 ORTHO05D001893 1.7e-30 136.3 196 41.8
TPR.G26981 Trifolium pratense HOM05D001607 ORTHO05D001893 1.7e-30 136.3 184 44.6
AUR62021171 Chenopodium quinoa HOM05D001607 ORTHO05D001893 2.3e-30 136.0 178 42.7
Medtr1g101030 Medicago truncatula HOM05D001607 ORTHO05D001893 2.3e-30 136.0 184 44.0
PSO478G2555 Papaver somniferum HOM05D001607 ORTHO05D001893 2.3e-30 136.0 190 41.6
Solyc03g025630.3 Solanum lycopersicum HOM05D001607 ORTHO05D001893 2.3e-30 136.0 93 67.7
arahy.Tifrunner.gnm1.ann1.GK85WT Arachis hypogaea HOM05D001607 ORTHO05D001893 1.5e-29 133.3 174 44.3
EL10Ac3g05618 Beta vulgaris HOM05D001607 ORTHO05D001893 1.5e-29 133.3 178 41.0
PSO782G3230 Papaver somniferum HOM05D001607 ORTHO05D001893 1.5e-29 133.3 191 40.8
ATR0680G301 Amborella trichopoda HOM05D001607 ORTHO05D001893 1.9e-29 132.9 185 42.7
unitig_46.g18793 Utricularia gibba HOM05D001607 ORTHO05D001893 1.9e-29 132.9 115 54.8
MBI18_g25519_MAGBIO Magnolia biondii HOM05D001607 ORTHO05D001893 2.5e-29 132.5 188 39.4
arahy.Tifrunner.gnm1.ann1.HZL4S5 Arachis hypogaea HOM05D001607 ORTHO05D001893 3.3e-29 132.1 190 41.1
TWI39G1280 Tripterygium wilfordii HOM05D001607 ORTHO05D001893 4.2e-29 131.7 186 42.5
Hund04843 Selenicereus undatus HOM05D001607 ORTHO05D001893 1.2e-28 130.2 115 55.7
ECA233G5223 Erigeron canadensis HOM05D001607 ORTHO05D001893 3.6e-28 128.6 187 41.2
vmacro06667 Vaccinium macrocarpon HOM05D001607 ORTHO05D001893 4.7e-28 128.3 96 61.5
Lsat_1_v5_gn_8_8420 Lactuca sativa HOM05D001607 ORTHO05D001893 8.0e-28 127.5 188 41.0
QL09p013882 Quercus lobata HOM05D001607 ORTHO05D001893 8.0e-28 127.5 99 60.6
Lalb_Chr02g0141081 Lupinus albus HOM05D001607 ORTHO05D001893 1.4e-27 126.7 187 39.6
Ca_10751_v3 Cicer arietinum L. HOM05D001607 ORTHO05D001893 1.8e-27 126.3 183 39.3
Glyma.10G234500 Glycine max HOM05D001607 ORTHO05D001893 2.3e-27 125.9 189 40.7
arahy.Tifrunner.gnm1.ann1.7UXB07 Arachis hypogaea HOM05D001607 ORTHO05D001893 5.2e-27 124.8 93 63.4
CDE08G1124 Ceratophyllum demersum HOM05D001607 ORTHO05D001893 6.8e-27 124.4 181 42.0
VMungo0720G1584 Vigna mungo HOM05D001607 ORTHO05D001893 6.8e-27 124.4 189 41.3
Nitab4.5_0001842g0120 Nicotiana tabacum HOM05D001607 ORTHO05D001893 2.6e-26 122.5 166 43.4
Phvul.007G071600 Phaseolus vulgaris HOM05D001607 ORTHO05D001893 4.4e-26 121.7 189 39.7
Ca_27533_v3 Cicer arietinum L. HOM05D001607 ORTHO05D001893 5.7e-26 121.3 169 44.4
Rhsim03G0187200 Rhododendron simsii HOM05D001607 ORTHO05D001893 4.9e-25 118.2 180 40.6
HPP92_011359 Vanilla planifolia HOM05D001607 ORTHO05D001893 4.9e-25 118.2 173 39.3
Pp3c7_23000 Physcomitrium patens HOM05D001607 ORTHO05D001893 8.3e-25 117.5 136 45.6
Haze_13673 Corylus avellana HOM05D001607 ORTHO05D001893 1.4e-24 116.7 111 53.2
HPP92_011358 Vanilla planifolia HOM05D001607 ORTHO05D001893 2.4e-24 115.9 172 39.5
arahy.Tifrunner.gnm1.ann1.B9FIPF Arachis hypogaea HOM05D001607 ORTHO05D001893 4.1e-24 115.2 92 60.9
HanXRQChr10g0304171 Helianthus annuus HOM05D001607 ORTHO05D001893 7.0e-24 114.4 182 40.7
Mapoly0069s0029 Marchantia polymorpha HOM05D001607 ORTHO05D001893 3.5e-23 112.1 98 51.0
SMO367G0172 Selaginella moellendorffii HOM05D001607 ORTHO05D001893 7.8e-23 110.9 173 36.4
Pp3c2_32420 Physcomitrium patens HOM05D001607 ORTHO05D001893 4.7e-20 101.7 93 52.7
arahy.Tifrunner.gnm1.ann1.M3PRP5 Arachis hypogaea HOM05D001607 ORTHO05D001893 3.4e-18 95.5 166 38.0
AagrBONN_evm.TU.Sc2ySwM_344.3434 Anthoceros agrestis HOM05D001607 ORTHO05D001893 8.3e-17 90.9 94 44.7
arahy.Tifrunner.gnm1.ann1.2YSW8E Arachis hypogaea HOM05D001607 ORTHO05D001893 1.2e-15 87.0 165 36.4
Ah.07g207010 Amaranthus hybridus HOM05D001607 ORTHO05D001893 1.6e-12 76.6 118 41.5
MELO3C034501.2 Cucumis melo HOM05D001607 ORTHO05D001893 1.8e-11 73.2 58 56.9
COL.COLO4_14279 Corchorus olitorius HOM05D000257 ORTHO05D009129 4.0e-11 72.0 53 56.6
PGSC0003DMG400019983 Solanum tuberosum HOM05D001607 ORTHO05D000214 1.2e-07 60.5 124 31.5
SEGI_36427 Sequoiadendron giganteum HOM05D001607 ORTHO05D001893 2.1e-07 59.7 139 32.4
SHI13772 Sapria himalayana HOM05D001607 ORTHO05D001893 1.7e-06 56.6 46 63.0
BcaNung07357 Brassica carinata HOM05D001607 ORTHO05D001893 3.9e-06 55.5 28 100.0


User provided reference genes

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