Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung05669 Brassica carinata HOM05D006050 ORTHO05D007457 4.9e-80 301.2 166 100.0
C07p49580 Brassica napus HOM05D006050 ORTHO05D007457 4.9e-80 301.2 166 100.0
BolC7t45462H Brassica oleracea HOM05D006050 ORTHO05D007457 4.9e-80 301.2 166 100.0
A03p51180 Brassica napus HOM05D006050 ORTHO05D007457 1.1e-79 300.1 166 99.4
BraA03t14200Z Brassica rapa HOM05D006050 ORTHO05D007457 1.1e-79 300.1 166 99.4
Sp7g15790 Schrenkiella parvula HOM05D006050 ORTHO05D007457 2.3e-77 292.4 166 95.8
Carub.0007s2301 Capsella rubella HOM05D006050 ORTHO05D007457 7.3e-76 287.3 166 93.4
AL7G36120 Arabidopsis lyrata HOM05D006050 ORTHO05D007457 6.2e-75 284.3 166 91.6
AT4G18270 Arabidopsis thaliana HOM05D006050 ORTHO05D007457 2.3e-74 282.3 166 90.4
Thhalv10025036m.g Eutrema salsugineum HOM05D006050 ORTHO05D007457 4.4e-73 278.1 166 91.0
Aa31LG6G960 Aethionema arabicum HOM05D006050 ORTHO05D007457 9.8e-73 276.9 166 88.6
THA.LOC104812850 Tarenaya hassleriana HOM05D006050 ORTHO05D007457 7.1e-63 244.2 166 77.7
PGR083G2192 Punica granatum HOM05D006050 ORTHO05D007457 3.6e-59 231.9 166 74.7
RcHm_v2.0_Chr5g0013951 Rosa chinensis HOM05D006050 ORTHO05D007457 6.2e-59 231.1 166 74.1
Haze_05583 Corylus avellana HOM05D006050 ORTHO05D007457 8.1e-59 230.7 166 74.1
FvH4_3g05720 Fragaria vesca HOM05D006050 ORTHO05D007457 1.1e-58 230.3 166 74.1
FAN21G0460 Fragaria x ananassa HOM05D006050 ORTHO05D007457 3.1e-58 228.8 166 73.5
FAN25G0090 Fragaria x ananassa HOM05D006050 ORTHO05D007457 4.0e-58 228.4 166 73.5
Atru.chr10.1253 Acer truncatum HOM05D006050 ORTHO05D007457 1.2e-57 226.9 166 71.1
Thecc.06G151800 Theobroma cacao HOM05D006050 ORTHO05D007457 1.2e-57 226.9 166 71.1
MD05G1284800 Malus domestica HOM05D006050 ORTHO05D007457 2.0e-57 226.1 166 72.3
Dinv30732 Davidia involucrata HOM05D006050 ORTHO05D007457 4.4e-57 224.9 166 70.5
MD10G1263200 Malus domestica HOM05D006050 ORTHO05D007457 4.4e-57 224.9 166 70.5
Hma1.2p1_0286F.1_g114100 Hydrangea macrophylla HOM05D006050 ORTHO05D007457 7.6e-57 224.2 164 70.7
MBI10_g02216_MAGBIO Magnolia biondii HOM05D006050 ORTHO05D007457 7.6e-57 224.2 166 71.1
Gohir.A05G149000 Gossypium hirsutum HOM05D006050 ORTHO05D007457 9.9e-57 223.8 166 69.3
Gohir.D05G151500 Gossypium hirsutum HOM05D006050 ORTHO05D007457 1.7e-56 223.0 166 69.3
Gorai.009G155500 Gossypium raimondii HOM05D006050 ORTHO05D007457 1.7e-56 223.0 166 69.3
Nitab4.5_0009607g0030 Nicotiana tabacum HOM05D006050 ORTHO05D007457 2.2e-56 222.6 166 70.5
Potri.011G080600 Populus trichocarpa HOM05D006050 ORTHO05D007457 2.2e-56 222.6 166 71.1
QL05p058532 Quercus lobata HOM05D006050 ORTHO05D007457 8.4e-56 220.7 164 70.7
Nitab4.5_0002275g0100 Nicotiana tabacum HOM05D006050 ORTHO05D007457 1.1e-55 220.3 166 69.3
Manes.17G069500 Manihot esculenta HOM05D006050 ORTHO05D007457 1.4e-55 219.9 166 70.5
PGSC0003DMG401021159 Solanum tuberosum HOM05D006050 ORTHO05D007457 1.9e-55 219.5 166 69.3
Eucgr.D00300 Eucalyptus grandis HOM05D006050 ORTHO05D007457 2.4e-55 219.2 166 69.9
Rhsim13G0194500 Rhododendron simsii HOM05D006050 ORTHO05D007457 2.4e-55 219.2 160 70.6
CsaV3_1G032660 Cucumis sativus L. HOM05D006050 ORTHO05D007457 3.2e-55 218.8 166 70.5
Sabra11G0069700 Salix brachista HOM05D006050 ORTHO05D007457 9.3e-55 217.2 166 69.9
Solyc02g070560.3 Solanum lycopersicum HOM05D006050 ORTHO05D007457 9.3e-55 217.2 166 68.7
TAR627G0203 Trochodendron aralioides HOM05D006050 ORTHO05D007457 9.3e-55 217.2 166 68.1
vmacro04186 Vaccinium macrocarpon HOM05D006050 ORTHO05D007457 1.6e-54 216.5 164 68.3
Aqoxy4G00089 Aquilegia oxysepala HOM05D006050 ORTHO05D007457 2.1e-54 216.1 166 66.9
Peaxi162Scf00170g00718 Petunia axillaris HOM05D006050 ORTHO05D007457 2.1e-54 216.1 164 67.7
Lj2C306G12 Lonicera japonica HOM05D006050 ORTHO05D007457 2.7e-54 215.7 166 68.7
CAN.G650.1 Capsicum annuum HOM05D006050 ORTHO05D007457 4.6e-54 214.9 166 67.5
Sed0022060 Sechium edule HOM05D006050 ORTHO05D007457 4.6e-54 214.9 166 69.9
Migut.M00918 Erythranthe guttata HOM05D006050 ORTHO05D007457 7.8e-54 214.2 166 66.9
ClCG03G007090 Citrullus lanatus HOM05D006050 ORTHO05D007457 1.3e-53 213.4 158 70.9
GSVIVG01021436001 Vitis vinifera HOM05D006050 ORTHO05D007457 5.1e-53 211.5 150 72.7
PSO017G0250 Papaver somniferum HOM05D006050 ORTHO05D007457 8.7e-53 210.7 167 67.7
Cc09_g09460 Coffea canephora HOM05D006050 ORTHO05D007457 1.5e-52 209.9 166 66.9
Duzib235G1544 Durio zibethinus HOM05D006050 ORTHO05D007457 1.5e-52 209.9 166 68.7
HanXRQChr02g0047351 Helianthus annuus HOM05D006050 ORTHO05D007457 2.5e-52 209.1 166 66.9
PSO170G3783 Papaver somniferum HOM05D006050 ORTHO05D007457 4.3e-52 208.4 167 67.1
TWI73G0574 Tripterygium wilfordii HOM05D006050 ORTHO05D007457 2.1e-51 206.1 166 66.9
Oeu052380.1 Olea europaea HOM05D006050 ORTHO05D007457 2.8e-51 205.7 166 64.5
Gorai.011G043000 Gossypium raimondii HOM05D006050 ORTHO05D007457 4.8e-51 204.9 166 64.5
Sabra11G0067500 Salix brachista HOM05D006050 ORTHO05D007457 2.4e-50 202.6 193 60.1
arahy.Tifrunner.gnm1.ann1.49YCVY Arachis hypogaea HOM05D006050 ORTHO05D007457 3.1e-50 202.2 166 66.3
arahy.Tifrunner.gnm1.ann1.9VA34X Arachis hypogaea HOM05D006050 ORTHO05D007457 3.1e-50 202.2 166 66.3
Duzib192G0778 Durio zibethinus HOM05D006050 ORTHO05D007457 3.1e-50 202.2 156 67.3
AagrBONN_evm.TU.Sc2ySwM_228.2617 Anthoceros agrestis HOM05D006050 ORTHO05D007457 2.0e-49 199.5 166 63.9
Lj6g0009694 Lotus japonicus HOM05D006050 ORTHO05D007457 4.4e-49 198.4 166 65.7
Ah.09g232650 Amaranthus hybridus HOM05D006050 ORTHO05D007457 9.9e-49 197.2 166 59.6
CiPaw.09G124900 Carya illinoinensis HOM05D006050 ORTHO05D007457 3.8e-48 195.3 149 70.5
Phvul.006G163900 Phaseolus vulgaris HOM05D006050 ORTHO05D007457 6.4e-48 194.5 166 62.0
Actinidia19520 Actinidia chinensis HOM05D006050 ORTHO05D007457 1.1e-47 193.7 151 66.9
Lalb_Chr18g0055531 Lupinus albus HOM05D006050 ORTHO05D007457 3.2e-47 192.2 166 61.4
SMO239G0146 Selaginella moellendorffii HOM05D006050 ORTHO05D007457 3.2e-47 192.2 166 63.3
VMungo0540G2452 Vigna mungo HOM05D006050 ORTHO05D007457 3.2e-47 192.2 166 60.8
ECA248G2274 Erigeron canadensis HOM05D006050 ORTHO05D007457 4.2e-47 191.8 167 63.5
Glyma.15G094900 Glycine max HOM05D006050 ORTHO05D007457 9.3e-47 190.7 167 64.1
Ca_00551_v3 Cicer arietinum L. HOM05D006050 ORTHO05D007457 6.0e-46 188.0 166 63.3
Sc05g0006350 Simmondsia chinensis HOM05D006050 ORTHO05D007457 7.8e-46 187.6 157 65.0
HPP92_021321 Vanilla planifolia HOM05D006050 ORTHO05D007457 6.6e-45 184.5 166 59.0
Mapoly0001s0010 Marchantia polymorpha HOM05D006050 ORTHO05D007457 1.1e-44 183.7 163 60.1
EL10Ac8g19724 Beta vulgaris HOM05D006050 ORTHO05D007457 1.9e-44 183.0 162 58.6
Nn3g20737 Nelumbo nucifera HOM05D006050 ORTHO05D007457 5.6e-44 181.4 164 60.4
Psat1g190800 Pisum sativum HOM05D006050 ORTHO05D007457 3.6e-43 178.7 166 60.8
Medtr2g019630 Medicago truncatula HOM05D006050 ORTHO05D007457 1.1e-42 177.2 166 60.2
TPR.G28613 Trifolium pratense HOM05D006050 ORTHO05D007457 4.5e-41 171.8 167 59.3
HPP92_008747 Vanilla planifolia HOM05D006050 ORTHO05D007457 5.8e-41 171.4 166 56.6
CBR_g3965 Chara braunii HOM05D006050 ORTHO05D007457 1.3e-40 170.2 166 54.8
SEGI_20862 Sequoiadendron giganteum HOM05D006050 ORTHO05D007457 8.7e-37 157.5 123 65.9
Cpa.g.sc166.17 Carica papaya HOM05D006050 ORTHO05D007457 2.5e-36 156.0 107 77.6
Cpa.g.sc166.18 Carica papaya HOM05D006050 ORTHO05D007457 2.5e-36 156.0 107 77.6
Lsat_1_v5_gn_1_97741 Lactuca sativa HOM05D006050 ORTHO05D007457 6.2e-35 151.4 105 75.2
MELO3C002716.2 Cucumis melo HOM05D006050 ORTHO05D007457 1.1e-34 150.6 105 78.1
ATR0044G011 Amborella trichopoda HOM05D006050 ORTHO05D007457 4.5e-33 145.2 105 70.5
DCAR_003921 Daucus carota HOM05D006050 ORTHO05D007457 4.5e-33 145.2 105 72.4
SalBow8G2368 Salvia bowleyana HOM05D006050 ORTHO05D007457 5.8e-33 144.8 105 72.4
AUR62030212 Chenopodium quinoa HOM05D006050 ORTHO05D007457 3.5e-30 135.6 144 52.8
AUR62027517 Chenopodium quinoa HOM05D006050 ORTHO05D007457 1.8e-29 133.3 268 36.6
SGA_v2.0_scaffold1G00164 Striga asiatica HOM05D006050 ORTHO05D007457 1.8e-29 133.3 166 49.4
Ciclev10017950m.g Citrus clementina HOM05D006050 ORTHO05D007457 3.3e-28 129.0 147 51.7
PRCOL_00000982 Prasinoderma coloniale HOM05D006050 ORTHO05D007457 5.8e-25 118.2 159 45.9
MCO07G478 Micromonas commoda HOM05D006050 ORTHO05D007457 1.6e-22 110.2 166 41.6
CSS0017405 Camellia sinensis var. sinensis HOM05D006050 ORTHO05D007457 1.0e-21 107.5 69 81.2
FvH4_3g05710 Fragaria vesca HOM05D006050 ORTHO05D007457 1.1e-20 104.0 120 53.3
PSO063G2775 Papaver somniferum HOM05D006050 ORTHO05D007457 6.9e-18 94.7 82 65.9
SGA_v2.0_scaffold333G48995 Striga asiatica HOM05D001706 ORTHO05D007457 4.6e-14 82.0 114 48.2
COL.COLO4_31088 Corchorus olitorius HOM05D006050 ORTHO05D007457 1.4e-10 70.5 61 57.4
CSS0030855 Camellia sinensis var. sinensis HOM05D006050 ORTHO05D007457 1.2e-06 57.4 45 55.6
CSS0036908 Camellia sinensis var. sinensis HOM05D006050 ORTHO05D007457 1.2e-06 57.4 45 55.6


User provided reference genes

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