Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g10324 Brassica carinata HOM05D004600 ORTHO05D005471 1.5e-33 145.6 74 100.0
BcaNung05668 Brassica carinata HOM05D004600 ORTHO05D005471 1.5e-33 145.6 74 100.0
BcaNung06780 Brassica carinata HOM05D004600 ORTHO05D005471 1.5e-33 145.6 74 100.0
A05p15020 Brassica napus HOM05D004600 ORTHO05D005471 1.1e-31 139.4 74 95.9
BolC4t23549H Brassica oleracea HOM05D004600 ORTHO05D005471 1.1e-31 139.4 74 95.9
BraA05t20428Z Brassica rapa HOM05D004600 ORTHO05D005471 1.1e-31 139.4 74 95.9
C04p20100 Brassica napus HOM05D004600 ORTHO05D005471 2.4e-31 138.3 74 94.6
BcaC02g11135 Brassica carinata HOM05D004600 ORTHO05D005471 5.4e-31 137.1 74 94.6
BcaNung05666 Brassica carinata HOM05D004600 ORTHO05D005471 5.4e-31 137.1 74 94.6
SpUn0968_0010 Schrenkiella parvula HOM05D004600 ORTHO05D005471 2.1e-30 135.2 78 92.3
AT2G30410 Arabidopsis thaliana HOM05D004600 ORTHO05D005471 4.6e-30 134.0 77 90.9
Carub.0004s1157 Capsella rubella HOM05D004600 ORTHO05D005471 3.0e-29 131.3 77 88.3
BcaB01g04106 Brassica carinata HOM05D004600 ORTHO05D005471 3.9e-29 131.0 74 90.5
Thhalv10017954m.g Eutrema salsugineum HOM05D004600 ORTHO05D005471 8.7e-29 129.8 77 87.0
CARHR123850 Cardamine hirsuta HOM05D004600 ORTHO05D005471 1.9e-28 128.6 77 88.3
AL136U10020 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 9.6e-28 126.3 77 87.0
AL4G25280 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 9.6e-28 126.3 77 87.0
Carub.0004s0600 Capsella rubella HOM05D004600 ORTHO05D005471 5.3e-26 120.6 75 85.3
THA.LOC104821611 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 3.4e-25 117.9 77 81.8
THA.LOC104805733 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 2.9e-24 114.8 77 79.2
Gohir.D11G317800 Gossypium hirsutum HOM05D004600 ORTHO05D005471 1.2e-22 109.4 77 72.7
Gorai.007G347600 Gossypium raimondii HOM05D004600 ORTHO05D005471 1.2e-22 109.4 77 72.7
Potri.013G071100 Populus trichocarpa HOM05D004600 ORTHO05D005471 1.2e-22 109.4 77 75.3
CSS0000756 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 1.6e-22 109.0 77 71.4
CANSAT56G0524 Cannabis sativa HOM05D004600 ORTHO05D005471 2.1e-22 108.6 73 75.3
arahy.Tifrunner.gnm1.ann1.FL4BP3 Arachis hypogaea HOM05D004600 ORTHO05D005471 3.5e-22 107.8 77 72.7
Lalb_Chr10g0107261 Lupinus albus HOM05D004600 ORTHO05D005471 3.5e-22 107.8 77 71.4
Sabra13G0062000 Salix brachista HOM05D004600 ORTHO05D005471 3.5e-22 107.8 77 74.0
Aa31LG2G2070 Aethionema arabicum HOM05D004600 ORTHO05D005471 4.6e-22 107.5 74 75.7
Hund03244 Selenicereus undatus HOM05D004600 ORTHO05D005471 4.6e-22 107.5 76 72.4
EL10Ac2g03665 Beta vulgaris HOM05D004600 ORTHO05D005471 6.0e-22 107.1 77 72.7
Thecc.05G234100 Theobroma cacao HOM05D004600 ORTHO05D005471 6.0e-22 107.1 77 72.7
Cpa.g.sc73.56 Carica papaya HOM05D004600 ORTHO05D005471 7.8e-22 106.7 77 71.4
Eucgr.E01748 Eucalyptus grandis HOM05D004600 ORTHO05D005471 7.8e-22 106.7 77 71.4
arahy.Tifrunner.gnm1.ann1.8V97K8 Arachis hypogaea HOM05D004600 ORTHO05D005471 1.0e-21 106.3 77 71.4
CSS0047927 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 1.0e-21 106.3 77 71.4
AUR62010214 Chenopodium quinoa HOM05D004600 ORTHO05D005471 1.3e-21 105.9 77 71.4
AUR62023888 Chenopodium quinoa HOM05D004600 ORTHO05D005471 1.3e-21 105.9 77 71.4
Gohir.A11G302200 Gossypium hirsutum HOM05D004600 ORTHO05D005471 1.7e-21 105.5 77 71.4
Ciclev10033122m.g Citrus clementina HOM05D004600 ORTHO05D005471 2.3e-21 105.1 76 72.4
COL.COLO4_08664 Corchorus olitorius HOM05D004910 ORTHO05D006864 3.0e-21 104.8 74 73.0
Duzib177G1065 Durio zibethinus HOM05D004600 ORTHO05D005471 3.0e-21 104.8 77 72.7
DCAR_002240 Daucus carota HOM05D000064 ORTHO05D001307 3.9e-21 104.4 69 75.4
DCAR_002257 Daucus carota HOM05D004600 ORTHO05D005471 3.9e-21 104.4 75 70.7
FvH4_7g07840 Fragaria vesca HOM05D004600 ORTHO05D005471 3.9e-21 104.4 78 70.5
FvH4_7g08250 Fragaria vesca HOM05D004600 ORTHO05D005471 3.9e-21 104.4 78 70.5
FAN01G2185 Fragaria x ananassa HOM05D004600 ORTHO05D005471 3.9e-21 104.4 78 70.5
FAN06G4779 Fragaria x ananassa HOM05D004600 ORTHO05D005471 3.9e-21 104.4 78 70.5
Lsat_1_v5_gn_3_31540 Lactuca sativa HOM05D004600 ORTHO05D005471 5.1e-21 104.0 77 71.4
Manes.08G156800 Manihot esculenta HOM05D004600 ORTHO05D005471 5.1e-21 104.0 77 70.1
CANSAT80G0198 Cannabis sativa HOM05D004600 ORTHO05D005471 6.6e-21 103.6 73 71.2
Hma1.2p1_2581F.1_g324750 Hydrangea macrophylla HOM05D004600 ORTHO05D005471 6.6e-21 103.6 75 69.3
GSVIVG01018312001 Vitis vinifera HOM05D004600 ORTHO05D005471 6.6e-21 103.6 77 70.1
Ciclev10017245m.g Citrus clementina HOM05D004600 ORTHO05D005471 8.7e-21 103.2 76 71.1
Manes.09G132900 Manihot esculenta HOM05D004600 ORTHO05D005471 1.1e-20 102.8 71 71.8
QL02p099100 Quercus lobata HOM05D004600 ORTHO05D005471 1.1e-20 102.8 76 69.7
ECA234G0066 Erigeron canadensis HOM05D004600 ORTHO05D005471 1.5e-20 102.4 77 70.1
Cfa003694 Carpinus fangiana HOM05D004600 ORTHO05D005471 1.9e-20 102.1 77 67.5
Nitab4.5_0006200g0020 Nicotiana tabacum HOM05D004600 ORTHO05D005471 1.9e-20 102.1 71 76.1
TAR374G1537 Trochodendron aralioides HOM05D004600 ORTHO05D005471 1.9e-20 102.1 76 68.4
Cc10_g08750 Coffea canephora HOM05D004600 ORTHO05D005471 2.5e-20 101.7 71 73.2
HanXRQChr17g0540501 Helianthus annuus HOM05D004600 ORTHO05D005471 2.5e-20 101.7 77 70.1
SalBow5G2739 Salvia bowleyana HOM05D004600 ORTHO05D005471 2.5e-20 101.7 77 68.8
SalBow5G4978 Salvia bowleyana HOM05D004600 ORTHO05D005471 2.5e-20 101.7 77 68.8
Rhsim07G0038000 Rhododendron simsii HOM05D004600 ORTHO05D005471 3.3e-20 101.3 77 68.8
Sed0013640 Sechium edule HOM05D004600 ORTHO05D005471 4.3e-20 100.9 75 68.0
TWI34G1465 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 4.3e-20 100.9 75 69.3
Actinidia30941 Actinidia chinensis HOM05D004600 ORTHO05D005471 5.6e-20 100.5 75 69.3
Ca_06414_v3 Cicer arietinum L. HOM05D004600 ORTHO05D005471 5.6e-20 100.5 78 67.9
arahy.Tifrunner.gnm1.ann1.AN2C62 Arachis hypogaea HOM05D004600 ORTHO05D005471 7.3e-20 100.1 77 68.8
Glyma.12G219600 Glycine max HOM05D004600 ORTHO05D005471 7.3e-20 100.1 75 68.0
RcHm_v2.0_Chr1g0341631 Rosa chinensis HOM05D004600 ORTHO05D005471 7.3e-20 100.1 78 67.9
Sed0004677 Sechium edule HOM05D004600 ORTHO05D005471 7.3e-20 100.1 75 66.7
Solyc01g068400.3 Solanum lycopersicum HOM05D004600 ORTHO05D005471 7.3e-20 100.1 77 67.5
Sopen01g030360 Solanum pennellii HOM05D004600 ORTHO05D005471 7.3e-20 100.1 77 67.5
PGSC0003DMG400017954 Solanum tuberosum HOM05D004600 ORTHO05D005471 7.3e-20 100.1 77 67.5
TWI32G0106 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 7.3e-20 100.1 75 69.3
MELO3C022478.2 Cucumis melo HOM05D004600 ORTHO05D005471 9.6e-20 99.8 76 67.1
HanXRQChr06g0175191 Helianthus annuus HOM05D004600 ORTHO05D005471 9.6e-20 99.8 77 68.8
Peaxi162Scf00309g00111 Petunia axillaris HOM05D004600 ORTHO05D005471 9.6e-20 99.8 77 68.8
TPR.G31719 Trifolium pratense HOM05D004600 ORTHO05D005471 9.6e-20 99.8 78 70.5
CsaV3_6G006410 Cucumis sativus L. HOM05D004600 ORTHO05D005471 1.3e-19 99.4 68 73.5
Phvul.008G274500 Phaseolus vulgaris HOM05D004600 ORTHO05D005471 1.3e-19 99.4 77 68.8
COL.COLO4_33093 Corchorus olitorius HOM05D004600 ORTHO05D005471 1.6e-19 99.0 74 70.3
Oeu011239.1 Olea europaea HOM05D004600 ORTHO05D005471 2.1e-19 98.6 77 66.2
VMungo0647G0484 Vigna mungo HOM05D004600 ORTHO05D005471 2.1e-19 98.6 77 67.5
CiPaw.11G057300 Carya illinoinensis HOM05D004600 ORTHO05D005471 2.8e-19 98.2 77 67.5
ClCG06G000640 Citrullus lanatus HOM05D004600 ORTHO05D005471 2.8e-19 98.2 75 65.3
PSO782G3599 Papaver somniferum HOM05D004600 ORTHO05D005471 2.8e-19 98.2 77 64.9
Prupe.2G105900 Prunus persica HOM05D004600 ORTHO05D005471 2.8e-19 98.2 78 65.4
MBI04_g38566_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 4.8e-19 97.4 76 64.5
PSO063G0817 Papaver somniferum HOM05D004600 ORTHO05D005471 4.8e-19 97.4 77 64.9
Aqoxy3G02625 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 6.2e-19 97.1 76 65.8
Aqoxy4G01604 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 6.2e-19 97.1 76 65.8
Migut.N01726 Erythranthe guttata HOM05D004600 ORTHO05D005471 6.2e-19 97.1 77 63.6
Medtr5g094290 Medicago truncatula HOM05D004600 ORTHO05D005471 6.2e-19 97.1 78 65.4
Nn6g33746 Nelumbo nucifera HOM05D004600 ORTHO05D005471 6.2e-19 97.1 67 73.1
PGR042G2124 Punica granatum HOM05D004600 ORTHO05D005471 8.1e-19 96.7 77 66.2
A03p17010 Brassica napus HOM05D004600 ORTHO05D005471 1.1e-18 96.3 57 87.7
MSTRG.28140 Avicennia marina HOM05D004600 ORTHO05D005471 1.4e-18 95.9 77 64.9
MD02G1232800 Malus domestica HOM05D004600 ORTHO05D005471 1.4e-18 95.9 78 64.1
Actinidia05778 Actinidia chinensis HOM05D000441 ORTHO05D005471 1.8e-18 95.5 67 73.1
arahy.Tifrunner.gnm1.ann1.M3PSJH Arachis hypogaea HOM05D004254 ORTHO05D005184 1.8e-18 95.5 69 69.6
CAN.G179.37 Capsicum annuum HOM05D004600 ORTHO05D005471 1.8e-18 95.5 77 64.9
MD07G1080900 Malus domestica HOM05D004600 ORTHO05D005471 1.8e-18 95.5 78 64.1
SalBow2G1105 Salvia bowleyana HOM05D004600 ORTHO05D005471 6.9e-18 93.6 77 63.6
Glyma.13G281700 Glycine max HOM05D004600 ORTHO05D005471 9.0e-18 93.2 75 65.3
Medtr5g094860 Medicago truncatula HOM05D004600 ORTHO05D005471 9.0e-18 93.2 78 62.8
ATR0594G180 Amborella trichopoda HOM05D004600 ORTHO05D005471 1.2e-17 92.8 76 65.8
LjContig00272g0018481 Lotus japonicus HOM05D004600 ORTHO05D005471 1.2e-17 92.8 73 67.1
HPP92_003331 Vanilla planifolia HOM05D004600 ORTHO05D005471 5.8e-17 90.5 70 64.3
MBI14_g39049_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 1.3e-16 89.4 76 60.5
FAN10G3323 Fragaria x ananassa HOM05D004600 ORTHO05D005471 2.9e-16 88.2 109 50.5
CDE02G3136 Ceratophyllum demersum HOM05D004600 ORTHO05D005471 3.8e-16 87.8 76 60.5
vmacro13519 Vaccinium macrocarpon HOM05D004600 ORTHO05D005471 3.8e-16 87.8 105 50.5
arahy.Tifrunner.gnm1.ann1.TEM6YH Arachis hypogaea HOM05D004600 ORTHO05D005471 4.9e-16 87.4 60 75.0
Peaxi162Scf00519g00014 Petunia axillaris HOM05D004600 ORTHO05D005471 4.9e-16 87.4 67 68.7
Aa31LG5G6310 Aethionema arabicum HOM05D004600 ORTHO05D005471 1.9e-15 85.5 78 64.1
Nitab4.5_0002801g0010 Nicotiana tabacum HOM05D004600 ORTHO05D005471 4.2e-15 84.3 108 49.1
AUR62013210 Chenopodium quinoa HOM05D004600 ORTHO05D005471 9.3e-15 83.2 63 71.4
Os02g0816500 Oryza sativa ssp. japonica HOM05D004600 ORTHO05D005471 1.6e-14 82.4 51 76.5
COL.COLO4_34174 Corchorus olitorius HOM05D004600 ORTHO05D005471 2.1e-14 82.0 48 81.2
SEGI_02498 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 2.1e-14 82.0 76 59.2
Atru.chr2.1648 Acer truncatum HOM05D004600 ORTHO05D005471 4.6e-14 80.9 43 90.7
Zm00001eb258870 Zea mays HOM05D004600 ORTHO05D005471 1.3e-13 79.3 42 85.7
Haze_15791 Corylus avellana HOM05D004600 ORTHO05D005471 8.7e-13 76.6 43 81.4
unitig_22.g5795 Utricularia gibba HOM05D004600 ORTHO05D005471 8.7e-13 76.6 69 58.0
Sc01g0008330 Simmondsia chinensis HOM05D004600 ORTHO05D005471 1.5e-12 75.9 65 61.5
SEGI_10368 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 3.3e-12 74.7 76 53.9
FAN01G1805 Fragaria x ananassa HOM05D004600 ORTHO05D005471 4.3e-12 74.3 57 68.4
Psat2g010800 Pisum sativum HOM05D004600 ORTHO05D005471 4.3e-12 74.3 46 76.1
Psat6g223560 Pisum sativum HOM05D004600 ORTHO05D005471 4.3e-12 74.3 46 76.1
HanXRQChr10g0286821 Helianthus annuus HOM05D004600 ORTHO05D005471 7.4e-12 73.6 43 81.4
Pp3c15_6440 Physcomitrium patens HOM05D004600 ORTHO05D005471 7.4e-12 73.6 75 52.0
CBR_g52286 Chara braunii HOM05D004600 ORTHO05D005471 2.8e-11 71.6 59 64.4
Duzib106G0868 Durio zibethinus HOM05D004600 ORTHO05D005471 3.7e-11 71.2 62 59.7
RcHm_v2.0_Chr1g0342531 Rosa chinensis HOM05D004600 ORTHO05D005471 3.7e-11 71.2 43 81.4
HanXRQChr02g0044381 Helianthus annuus HOM05D004600 ORTHO05D005471 6.2e-11 70.5 43 76.7
SMO140G0024 Selaginella moellendorffii HOM05D004600 ORTHO05D005471 1.8e-10 68.9 43 72.1
Mapoly0038s0031 Marchantia polymorpha HOM05D004600 ORTHO05D005471 1.2e-09 66.2 67 53.7
RhsimUnG0214300 Rhododendron simsii HOM05D004600 ORTHO05D005471 2.6e-09 65.1 67 47.8
COL.COLO4_28352 Corchorus olitorius HOM05D004600 ORTHO05D005471 2.2e-08 62.0 44 63.6
Oeu019263.1 Olea europaea HOM05D004600 ORTHO05D005471 2.9e-08 61.6 54 61.1
arahy.Tifrunner.gnm1.ann1.3LH6CZ Arachis hypogaea HOM05D004600 ORTHO05D021519 8.4e-08 60.1 92 43.5
Cre16.g670800 Chlamydomonas reinhardtii HOM05D004600 ORTHO05D005471 1.1e-07 59.7 70 51.4
AagrBONN_evm.TU.Sc2ySwM_368.563 Anthoceros agrestis HOM05D001974 ORTHO05D001995 1.4e-07 59.3 59 50.8
C03p20070 Brassica napus HOM05D004600 ORTHO05D005471 1.4e-07 59.3 75 53.3
BolC3t14384H Brassica oleracea HOM05D004600 ORTHO05D005471 1.4e-07 59.3 75 53.3
MCO15G208 Micromonas commoda HOM05D004600 ORTHO05D005471 1.6e-06 55.8 62 51.6
RcHm_v2.0_Chr1g0341741 Rosa chinensis HOM05D004600 ORTHO05D005471 1.6e-06 55.8 28 89.3
PRCOL_00002235 Prasinoderma coloniale HOM05D004600 ORTHO05D005471 2.1e-06 55.5 65 47.7
BcaC01g05996 Brassica carinata HOM05D004600 ORTHO05D005471 6.0e-06 53.9 73 50.7


User provided reference genes

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