Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung05626 Brassica carinata HOM05D007528 ORTHO05D008503 8.0e-138 493.8 259 100.0
BraA04t18594Z Brassica rapa HOM05D007528 ORTHO05D008503 2.4e-110 402.5 264 83.7
A04p31360 Brassica napus HOM05D007528 ORTHO05D008503 1.0e-108 397.1 264 83.3
Sp4g23430 Schrenkiella parvula HOM05D007528 ORTHO05D008503 8.6e-108 394.0 261 80.5
C04p68770 Brassica napus HOM05D007528 ORTHO05D008503 1.5e-107 393.3 262 79.8
BolC4t28382H Brassica oleracea HOM05D007528 ORTHO05D008503 1.2e-106 390.2 262 79.0
Thhalv10017145m.g Eutrema salsugineum HOM05D007528 ORTHO05D008503 5.8e-104 381.3 266 77.8
AL4G39090 Arabidopsis lyrata HOM05D007528 ORTHO05D008503 1.7e-103 379.8 266 77.4
Carub.0004s2343 Capsella rubella HOM05D007528 ORTHO05D008503 7.1e-102 374.4 264 75.4
AT2G41120 Arabidopsis thaliana HOM05D007528 ORTHO05D008503 6.6e-100 367.9 266 75.9
Aa31LG3G960 Aethionema arabicum HOM05D007528 ORTHO05D008503 3.8e-87 325.5 268 64.9
CARHR136210 Cardamine hirsuta HOM05D007528 ORTHO05D008503 1.4e-86 323.6 264 72.3
THA.LOC104803254 Tarenaya hassleriana HOM05D007528 ORTHO05D008503 4.2e-86 322.0 266 65.4
BcaC02g12850 Brassica carinata HOM05D007528 ORTHO05D008503 6.7e-76 288.1 162 95.1
Manes.09G073900 Manihot esculenta HOM05D007528 ORTHO05D008503 1.1e-59 234.2 269 52.0
Potri.006G025200 Populus trichocarpa HOM05D007528 ORTHO05D008503 7.4e-59 231.5 222 54.5
TAR623G0014 Trochodendron aralioides HOM05D007528 ORTHO05D008503 2.2e-58 229.9 247 50.6
Glyma.19G123400 Glycine max HOM05D007528 ORTHO05D008503 1.1e-57 227.6 180 62.8
Dinv14550 Davidia involucrata HOM05D007528 ORTHO05D008503 1.8e-57 226.9 179 62.0
Cpa.g.sc33.188 Carica papaya HOM05D007528 ORTHO05D008503 3.1e-57 226.1 259 50.6
Duzib093G0275 Durio zibethinus HOM05D007528 ORTHO05D008503 4.1e-57 225.7 201 57.7
Nitab4.5_0000382g0060 Nicotiana tabacum HOM05D007528 ORTHO05D008503 6.9e-57 224.9 200 57.5
Ciclev10012580m.g Citrus clementina HOM05D007528 ORTHO05D008503 9.0e-57 224.6 252 51.2
Lalb_Chr22g0358311 Lupinus albus HOM05D007528 ORTHO05D008503 2.0e-56 223.4 243 49.4
PGR042G1749 Punica granatum HOM05D007528 ORTHO05D008503 2.0e-56 223.4 242 52.5
RcHm_v2.0_Chr3g0495771 Rosa chinensis HOM05D007528 ORTHO05D008503 2.6e-56 223.0 257 49.4
Sabra06G0018500 Salix brachista HOM05D007528 ORTHO05D008503 2.6e-56 223.0 266 48.5
COL.COLO4_08087 Corchorus olitorius HOM05D007528 ORTHO05D008503 3.4e-56 222.6 211 54.5
Medtr7g088210 Medicago truncatula HOM05D007528 ORTHO05D008503 3.4e-56 222.6 179 62.0
arahy.Tifrunner.gnm1.ann1.ARK2IX Arachis hypogaea HOM05D007528 ORTHO05D008503 5.9e-56 221.9 258 50.8
MSTRG.19743 Avicennia marina HOM05D007528 ORTHO05D008503 5.9e-56 221.9 183 59.0
SalBow6G5858 Salvia bowleyana HOM05D007528 ORTHO05D008503 7.7e-56 221.5 231 51.9
Lj1g0006388 Lotus japonicus HOM05D007528 ORTHO05D008503 1.0e-55 221.1 261 52.1
arahy.Tifrunner.gnm1.ann1.ZMQ31P Arachis hypogaea HOM05D007528 ORTHO05D008503 1.3e-55 220.7 179 60.9
Oeu032951.1 Olea europaea HOM05D007528 ORTHO05D008503 1.3e-55 220.7 209 57.9
Phvul.001G109000 Phaseolus vulgaris HOM05D007528 ORTHO05D008503 1.3e-55 220.7 252 54.8
FvH4_1g29750 Fragaria vesca HOM05D007528 ORTHO05D008503 2.2e-55 219.9 258 49.6
FAN28G2175 Fragaria x ananassa HOM05D007528 ORTHO05D008503 2.2e-55 219.9 259 49.4
ClCG10G016790 Citrullus lanatus HOM05D007528 ORTHO05D008503 2.9e-55 219.5 244 50.8
QL11p009983 Quercus lobata HOM05D007528 ORTHO05D008503 2.9e-55 219.5 256 49.2
Ca_08340_v3 Cicer arietinum L. HOM05D007528 ORTHO05D008503 6.5e-55 218.4 197 59.4
Atru.chr8.936 Acer truncatum HOM05D007528 ORTHO05D008503 8.5e-55 218.0 271 49.1
FAN26G0883 Fragaria x ananassa HOM05D007528 ORTHO05D008503 8.5e-55 218.0 258 49.6
SalBow6G5282 Salvia bowleyana HOM05D007528 ORTHO05D008503 8.5e-55 218.0 246 51.2
TPR.G23704 Trifolium pratense HOM05D007528 ORTHO05D008503 8.5e-55 218.0 252 52.4
Thecc.05G128400 Theobroma cacao HOM05D007528 ORTHO05D008503 1.1e-54 217.6 253 49.4
CsaV3_3G039560 Cucumis sativus L. HOM05D007528 ORTHO05D008503 1.4e-54 217.2 242 50.4
vmacro12911 Vaccinium macrocarpon HOM05D007528 ORTHO05D008503 1.4e-54 217.2 257 51.4
CSS0027135 Camellia sinensis var. sinensis HOM05D007528 ORTHO05D008503 1.9e-54 216.9 235 51.5
TWI63G0885 Tripterygium wilfordii HOM05D007528 ORTHO05D008503 1.9e-54 216.9 252 49.2
Peaxi162Scf00183g00712 Petunia axillaris HOM05D007528 ORTHO05D008503 2.5e-54 216.5 199 55.8
Cc06_g21080 Coffea canephora HOM05D007528 ORTHO05D008503 3.2e-54 216.1 239 49.8
Gorai.002G231000 Gossypium raimondii HOM05D007528 ORTHO05D008503 4.2e-54 215.7 200 55.5
PGSC0003DMG400019757 Solanum tuberosum HOM05D007528 ORTHO05D008503 4.2e-54 215.7 201 53.7
EL10Ac5g11614 Beta vulgaris HOM05D007528 ORTHO05D008503 5.5e-54 215.3 260 48.1
Gohir.D01G187600 Gossypium hirsutum HOM05D007528 ORTHO05D008503 7.2e-54 214.9 200 55.0
MD12G1013500 Malus domestica HOM05D007528 ORTHO05D008503 7.2e-54 214.9 265 51.7
MBI13_g02396_MAGBIO Magnolia biondii HOM05D007528 ORTHO05D008503 9.4e-54 214.5 259 49.4
PSO729G0248 Papaver somniferum HOM05D007528 ORTHO05D008503 9.4e-54 214.5 180 58.9
Eucgr.A02169 Eucalyptus grandis HOM05D007528 ORTHO05D008503 1.2e-53 214.2 255 49.4
GSVIVG01025860001 Vitis vinifera HOM05D007528 ORTHO05D008503 1.2e-53 214.2 257 50.2
CANSAT21G0864 Cannabis sativa HOM05D007528 ORTHO05D008503 1.6e-53 213.8 229 52.4
Gohir.A01G197400 Gossypium hirsutum HOM05D007528 ORTHO05D008503 1.6e-53 213.8 200 55.0
Psat3g082960 Pisum sativum HOM05D007528 ORTHO05D008503 1.6e-53 213.8 246 50.8
Lj2A414T28 Lonicera japonica HOM05D007528 ORTHO05D008503 3.6e-53 212.6 240 51.2
Aqoxy2G00067 Aquilegia oxysepala HOM05D007528 ORTHO05D008503 7.9e-53 211.5 256 48.8
Sed0015046 Sechium edule HOM05D007528 ORTHO05D008503 1.4e-52 210.7 201 54.2
Nn7g37298 Nelumbo nucifera HOM05D007528 ORTHO05D008503 1.8e-52 210.3 181 58.0
Solyc03g044630.2 Solanum lycopersicum HOM05D007528 ORTHO05D008503 1.8e-52 210.3 201 53.2
CDE04G0261 Ceratophyllum demersum HOM05D007528 ORTHO05D008503 3.0e-52 209.5 225 50.7
DCAR_013508 Daucus carota HOM05D007528 ORTHO05D008503 3.9e-52 209.1 205 53.2
Migut.J01598 Erythranthe guttata HOM05D007528 ORTHO05D008503 5.1e-52 208.8 179 58.7
Haze_09241 Corylus avellana HOM05D007528 ORTHO05D006305 5.7e-51 205.3 205 53.7
ATR0307G122 Amborella trichopoda HOM05D007528 ORTHO05D008503 8.2e-50 201.4 182 54.9
ECA236G1579 Erigeron canadensis HOM05D007528 ORTHO05D008503 1.1e-49 201.1 177 58.8
Lsat_1_v5_gn_8_83941 Lactuca sativa HOM05D007528 ORTHO05D008503 1.4e-49 200.7 176 57.4
HanXRQChr04g0125621 Helianthus annuus HOM05D007528 ORTHO05D008503 3.1e-49 199.5 238 47.9
Zm00001eb195960 Zea mays HOM05D007528 ORTHO05D008503 6.5e-47 191.8 191 51.8
Os11g0130200 Oryza sativa ssp. japonica HOM05D007528 ORTHO05D008503 1.4e-46 190.7 251 46.6
Prupe.7G017900 Prunus persica HOM05D007528 ORTHO05D008503 7.9e-45 184.9 185 55.1
SEGI_20851 Sequoiadendron giganteum HOM05D007528 ORTHO05D008503 2.0e-43 180.3 159 57.2
Mapoly0168s0009 Marchantia polymorpha HOM05D007528 ORTHO05D008503 1.7e-42 177.2 268 41.0
AagrBONN_evm.TU.Sc2ySwM_344.4238 Anthoceros agrestis HOM05D007528 ORTHO05D008503 4.1e-41 172.6 213 45.1
Pp3c21_6860 Physcomitrium patens HOM05D007528 ORTHO05D008503 9.1e-41 171.4 239 43.1
CiPaw.13G169300 Carya illinoinensis HOM05D007528 ORTHO05D008503 3.0e-36 156.4 155 52.3
FAN19G0638 Fragaria x ananassa HOM05D007528 ORTHO05D008503 6.7e-36 155.2 129 61.2
SMO266G0100 Selaginella moellendorffii HOM05D007528 ORTHO05D008503 6.7e-36 155.2 174 46.0
Rhsim10G0151800 Rhododendron simsii HOM05D007528 ORTHO05D008503 8.8e-36 154.8 137 57.7
CBR_g37627 Chara braunii HOM05D007528 ORTHO05D008503 2.0e-35 153.7 182 45.6
CAN.G1129.33 Capsicum annuum HOM05D007528 ORTHO05D008503 1.2e-29 134.4 119 54.6
Sopen03g008910 Solanum pennellii HOM05D007528 ORTHO05D008503 2.3e-28 130.2 117 52.1
Glyma.03G119100 Glycine max HOM05D007528 ORTHO05D008503 2.0e-24 117.1 124 50.0
unitig_21.g20663 Utricularia gibba HOM05D007528 ORTHO05D008503 2.9e-15 86.7 173 34.1
FAN23G1305 Fragaria x ananassa HOM05D007528 ORTHO05D029410 2.2e-10 70.5 82 50.0
Glyma.03G119000 Glycine max HOM05D007528 ORTHO05D008503 1.4e-09 67.8 141 43.3
VMungo1383G2363 Vigna mungo HOM05D007528 ORTHO05D008503 7.0e-09 65.5 129 48.1
Hma1.2p1_1327F.1_g275910 Hydrangea macrophylla HOM05D007528 ORTHO05D008503 8.6e-07 58.5 70 51.4
SEGI_18622 Sequoiadendron giganteum HOM05D007528 ORTHO05D008503 2.5e-06 57.0 34 70.6


User provided reference genes

Program Settings