Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung05508 Brassica carinata HOM05D006057 ORTHO05D007224 1.3e-120 436.4 223 100.0
BcaC06g32027 Brassica carinata HOM05D006057 ORTHO05D007224 7.8e-41 171.4 223 52.5
BcaNung04734 Brassica carinata HOM05D006057 ORTHO05D007224 7.8e-41 171.4 223 52.5
BolC9t60103H Brassica oleracea HOM05D006057 ORTHO05D007224 7.8e-41 171.4 223 52.5
C09p73700 Brassica napus HOM05D006057 ORTHO05D007224 3.9e-40 169.1 223 52.0
BolC9t60100H Brassica oleracea HOM05D006057 ORTHO05D007224 1.1e-39 167.5 223 51.6
BraA10t45317Z Brassica rapa HOM05D006057 ORTHO05D007224 4.7e-38 162.2 223 50.2
BcaC06g32028 Brassica carinata HOM05D006057 ORTHO05D007224 1.2e-36 157.5 121 71.1
BcaNung05509 Brassica carinata HOM05D006057 ORTHO05D007224 1.2e-36 157.5 114 72.8
Sp6g39640 Schrenkiella parvula HOM05D006057 ORTHO05D007224 2.3e-32 143.3 119 66.4
BcaC03g13034 Brassica carinata HOM05D006057 ORTHO05D007224 8.7e-32 141.4 119 65.5
BcaC03g13036 Brassica carinata HOM05D006057 ORTHO05D007224 8.7e-32 141.4 119 65.5
Thhalv10015298m.g Eutrema salsugineum HOM05D006057 ORTHO05D007224 8.7e-32 141.4 118 66.9
BraA02t04741Z Brassica rapa HOM05D006057 ORTHO05D007224 1.1e-31 141.0 119 66.4
BcaB05g21854 Brassica carinata HOM05D006057 ORTHO05D007224 2.5e-31 139.8 119 66.4
AT5G03050 Arabidopsis thaliana HOM05D006057 ORTHO05D007224 9.6e-31 137.9 120 64.2
AL6G12340 Arabidopsis lyrata HOM05D006057 ORTHO05D007224 2.1e-30 136.7 120 63.3
C02p00760 Brassica napus HOM05D006057 ORTHO05D007224 6.2e-30 135.2 115 67.0
BolC2t06074H Brassica oleracea HOM05D006057 ORTHO05D007224 6.2e-30 135.2 115 67.0
CARHR210270 Cardamine hirsuta HOM05D006057 ORTHO05D007224 6.9e-29 131.7 120 60.0
Carub.0006s0184 Capsella rubella HOM05D006057 ORTHO05D007224 9.0e-29 131.3 120 60.8
Aa31LG1G21980 Aethionema arabicum HOM05D006057 ORTHO05D007224 7.1e-26 121.7 122 58.2
Ciclev10023548m.g Citrus clementina HOM05D006057 ORTHO05D007224 1.3e-22 110.9 120 47.5
Atru.chr5.830 Acer truncatum HOM05D006057 ORTHO05D007224 2.1e-22 110.2 120 50.0
Potri.014G110300 Populus trichocarpa HOM05D006057 ORTHO05D007224 6.9e-21 105.1 120 48.3
GSVIVG01028268001 Vitis vinifera HOM05D006057 ORTHO05D007224 1.2e-20 104.4 114 50.9
Cpa.g.sc57.50 Carica papaya HOM05D006057 ORTHO05D007224 1.5e-20 104.0 120 50.8
Manes.05G006500 Manihot esculenta HOM05D006057 ORTHO05D007224 2.0e-20 103.6 120 47.5
Eucgr.A00985 Eucalyptus grandis HOM05D006057 ORTHO05D007224 2.6e-20 103.2 119 44.5
Duzib138G1502 Durio zibethinus HOM05D006057 ORTHO05D007224 3.4e-20 102.8 121 45.5
RcHm_v2.0_Chr2g0148291 Rosa chinensis HOM05D006057 ORTHO05D007224 9.9e-20 101.3 117 47.0
TWI14G0531 Tripterygium wilfordii HOM05D006057 ORTHO05D007224 9.9e-20 101.3 119 47.9
Glyma.10G140400 Glycine max HOM05D006057 ORTHO05D007224 1.3e-19 100.9 109 49.5
Gohir.D12G122500 Gossypium hirsutum HOM05D006057 ORTHO05D007224 1.7e-19 100.5 116 48.3
Hma1.2p1_0350F.1_g132530 Hydrangea macrophylla HOM05D006057 ORTHO05D007224 1.7e-19 100.5 117 49.6
Nn4g25242 Nelumbo nucifera HOM05D006057 ORTHO05D007224 1.7e-19 100.5 111 45.0
COL.COLO4_23092 Corchorus olitorius HOM05D006057 ORTHO05D007224 2.9e-19 99.8 116 47.4
QL09p037524 Quercus lobata HOM05D006057 ORTHO05D007224 2.9e-19 99.8 117 48.7
Sed0018142 Sechium edule HOM05D006057 ORTHO05D007224 6.4e-19 98.6 121 47.9
Prupe.3G028700 Prunus persica HOM05D006057 ORTHO05D007224 8.4e-19 98.2 118 45.8
TAR633G2394 Trochodendron aralioides HOM05D006057 ORTHO05D007224 8.4e-19 98.2 120 46.7
Gorai.008G133300 Gossypium raimondii HOM05D006057 ORTHO05D007224 1.1e-18 97.8 115 47.8
CANSAT25G1403 Cannabis sativa HOM05D006057 ORTHO05D007224 1.9e-18 97.1 92 52.2
Lalb_Chr02g0147311 Lupinus albus HOM05D006057 ORTHO05D007224 1.9e-18 97.1 113 49.6
VMungo0720G1137 Vigna mungo HOM05D006057 ORTHO05D007224 1.9e-18 97.1 111 46.8
Gohir.A12G118700 Gossypium hirsutum HOM05D006057 ORTHO05D007224 2.4e-18 96.7 116 45.7
Phvul.007G207500 Phaseolus vulgaris HOM05D006057 ORTHO05D007224 2.4e-18 96.7 113 46.9
PGR042G0310 Punica granatum HOM05D006057 ORTHO05D007224 2.4e-18 96.7 120 43.3
FvH4_6g36280 Fragaria vesca HOM05D006057 ORTHO05D007224 3.2e-18 96.3 113 45.1
TWI59G0504 Tripterygium wilfordii HOM05D006057 ORTHO05D007224 3.2e-18 96.3 117 47.0
Gohir.A07G132650 Gossypium hirsutum HOM05D006057 ORTHO05D007224 4.2e-18 95.9 102 49.0
Lj1C4G2 Lonicera japonica HOM05D006057 ORTHO05D007224 4.2e-18 95.9 99 50.5
Haze_05170 Corylus avellana HOM05D006057 ORTHO05D007224 5.5e-18 95.5 117 45.3
Lju2566A1T37 Lonicera japonica HOM05D006057 ORTHO05D007224 7.1e-18 95.1 99 50.5
SHI19776 Sapria himalayana HOM05D006057 ORTHO05D007224 9.3e-18 94.7 114 43.9
arahy.Tifrunner.gnm1.ann1.78VVNS Arachis hypogaea HOM05D006057 ORTHO05D007224 1.2e-17 94.4 111 46.8
arahy.Tifrunner.gnm1.ann1.TF3SPP Arachis hypogaea HOM05D006057 ORTHO05D007224 1.2e-17 94.4 111 46.8
ClCG10G013240 Citrullus lanatus HOM05D006057 ORTHO05D007224 1.6e-17 94.0 157 39.5
Lj5g0024678 Lotus japonicus HOM05D006057 ORTHO05D007224 1.6e-17 94.0 111 47.7
Sabra02G0131200 Salix brachista HOM05D006057 ORTHO05D007224 1.6e-17 94.0 110 50.0
CSS0031729 Camellia sinensis var. sinensis HOM05D006057 ORTHO05D007224 2.1e-17 93.6 120 46.7
Rhsim01G0001300 Rhododendron simsii HOM05D006057 ORTHO05D007224 3.5e-17 92.8 95 48.4
TPR.G3097 Trifolium pratense HOM05D006057 ORTHO05D007224 3.5e-17 92.8 113 47.8
Medtr4g118050 Medicago truncatula HOM05D006057 ORTHO05D007224 6.0e-17 92.0 112 46.4
MD17G1156700 Malus domestica HOM05D006057 ORTHO05D007224 7.9e-17 91.7 117 41.0
Psat6g157560 Pisum sativum HOM05D006057 ORTHO05D007224 1.0e-16 91.3 113 45.1
ECA238G2998 Erigeron canadensis HOM05D006057 ORTHO05D007224 1.3e-16 90.9 117 43.6
CsaV3_3G043390 Cucumis sativus L. HOM05D006057 ORTHO05D007224 1.8e-16 90.5 116 48.3
DCAR_012292 Daucus carota HOM05D006057 ORTHO05D007224 1.8e-16 90.5 135 43.0
Medtr1g085355 Medicago truncatula HOM05D006057 ORTHO05D007224 1.8e-16 90.5 112 45.5
Medtr1g085440 Medicago truncatula HOM05D006057 ORTHO05D007224 1.8e-16 90.5 111 44.1
Migut.L00831 Erythranthe guttata HOM05D006057 ORTHO05D007224 2.3e-16 90.1 110 43.6
Glyma.20G089200 Glycine max HOM05D006057 ORTHO05D007224 3.0e-16 89.7 122 46.7
MELO3C026900.2 Cucumis melo HOM05D006057 ORTHO05D007224 3.9e-16 89.4 115 46.1
MBI18_g03875_MAGBIO Magnolia biondii HOM05D006057 ORTHO05D007224 3.9e-16 89.4 120 43.3
vmacro02351 Vaccinium macrocarpon HOM05D006057 ORTHO05D007224 3.9e-16 89.4 118 41.5
Ca_10224_v3 Cicer arietinum L. HOM05D006057 ORTHO05D007224 2.5e-15 86.7 106 44.3
Nitab4.5_0002046g0150 Nicotiana tabacum HOM05D006057 ORTHO05D007224 2.5e-15 86.7 114 41.2
Sopen03g037330 Solanum pennellii HOM05D006057 ORTHO05D007224 2.5e-15 86.7 99 45.5
CDE01G0754 Ceratophyllum demersum HOM05D006057 ORTHO05D007224 3.3e-15 86.3 119 39.5
DCAR_012291 Daucus carota HOM05D006057 ORTHO05D007224 3.3e-15 86.3 119 45.4
Migut.L01023 Erythranthe guttata HOM05D006057 ORTHO05D007224 3.3e-15 86.3 100 42.0
Peaxi162Scf00314g00430 Petunia axillaris HOM05D006057 ORTHO05D007224 3.3e-15 86.3 112 40.2
Aqoxy5G02874 Aquilegia oxysepala HOM05D006057 ORTHO05D007224 4.3e-15 85.9 122 43.4
PSO170G4276 Papaver somniferum HOM05D006057 ORTHO05D007224 4.3e-15 85.9 114 43.9
Migut.L00999 Erythranthe guttata HOM05D006057 ORTHO05D007224 5.6e-15 85.5 97 44.3
Nitab4.5_0002450g0080 Nicotiana tabacum HOM05D006057 ORTHO05D007224 5.6e-15 85.5 112 41.1
Solyc03g118440.3 Solanum lycopersicum HOM05D006057 ORTHO05D007224 7.4e-15 85.1 99 44.4
PSO339G1810 Papaver somniferum HOM05D006057 ORTHO05D007224 9.6e-15 84.7 111 45.0
PGSC0003DMG400014183 Solanum tuberosum HOM05D006057 ORTHO05D007224 9.6e-15 84.7 99 44.4
Cc08_g05070 Coffea canephora HOM05D006057 ORTHO05D007224 2.1e-14 83.6 96 45.8
Nitab4.5_0001841g0090 Nicotiana tabacum HOM05D006057 ORTHO05D007224 2.8e-14 83.2 121 38.8
PSO081G0045 Papaver somniferum HOM05D006057 ORTHO05D007224 3.7e-14 82.8 112 44.6
SGA_v2.0_scaffold36G14563 Striga asiatica HOM05D006057 ORTHO05D007224 3.7e-14 82.8 110 41.8
HanXRQChr07g0194641 Helianthus annuus HOM05D006057 ORTHO05D007224 4.8e-14 82.4 101 40.6
CAN.G843.33 Capsicum annuum HOM05D006057 ORTHO05D007224 6.2e-14 82.0 112 40.2
Lsat_1_v5_gn_2_108401 Lactuca sativa HOM05D006057 ORTHO05D007224 6.2e-14 82.0 92 47.8
Nitab4.5_0010904g0040 Nicotiana tabacum HOM05D006057 ORTHO05D007224 6.2e-14 82.0 89 47.2
Actinidia21332 Actinidia chinensis HOM05D006057 ORTHO05D007224 8.1e-14 81.6 89 47.2
SGA_v2.0_scaffold38G15005 Striga asiatica HOM05D006057 ORTHO05D007224 8.1e-14 81.6 113 38.9
Oeu048368.1 Olea europaea HOM05D006057 ORTHO05D007224 1.1e-13 81.3 113 41.6
unitig_26.g10007 Utricularia gibba HOM05D006057 ORTHO05D007224 1.8e-13 80.5 100 42.0
EL10Ac4g10232 Beta vulgaris HOM05D006057 ORTHO05D007224 2.4e-13 80.1 139 33.1
AUR62000136 Chenopodium quinoa HOM05D006057 ORTHO05D007224 5.3e-13 79.0 115 36.5
Sc09g0000780 Simmondsia chinensis HOM05D006057 ORTHO05D007224 6.9e-13 78.6 115 38.3
Ah.04g162100 Amaranthus hybridus HOM05D006057 ORTHO05D007224 2.6e-12 76.6 109 37.6
Hund22023 Selenicereus undatus HOM05D006057 ORTHO05D007224 1.0e-11 74.7 115 36.5
Ah.06g194050 Amaranthus hybridus HOM05D006057 ORTHO05D007224 1.7e-11 73.9 108 38.0
AUR62019316 Chenopodium quinoa HOM05D006057 ORTHO05D007224 2.9e-11 73.2 86 39.5
A10p32810 Brassica napus HOM05D000156 ORTHO05D001430 3.8e-11 72.8 67 71.6
HPP92_026861 Vanilla planifolia HOM05D006057 ORTHO05D007224 4.9e-11 72.4 124 38.7
Gorai.001G149000 Gossypium raimondii HOM05D006057 ORTHO05D007224 6.5e-11 72.0 56 57.1
SEGI_31615 Sequoiadendron giganteum HOM05D006057 ORTHO05D007224 8.4e-11 71.6 115 33.9
CiPaw.07G127700 Carya illinoinensis HOM05D006057 ORTHO05D007224 3.2e-10 69.7 117 39.3
CDE12G0816 Ceratophyllum demersum HOM05D006057 ORTHO05D007224 4.2e-10 69.3 207 28.5
Os03g0108700 Oryza sativa ssp. japonica HOM05D006057 ORTHO05D007224 1.2e-09 67.8 80 42.5
SMO361G0765 Selaginella moellendorffii HOM05D006057 ORTHO05D007224 1.2e-09 67.8 88 43.2
Potri.002G184600 Populus trichocarpa HOM05D006057 ORTHO05D007224 1.6e-09 67.4 97 42.3
Zm00001eb000680 Zea mays HOM05D006057 ORTHO05D007224 2.1e-09 67.0 92 41.3
Gohir.D07G136950 Gossypium hirsutum HOM05D006057 ORTHO05D007224 7.9e-09 65.1 56 57.1
ATR0019G040 Amborella trichopoda HOM05D006057 ORTHO05D007224 1.3e-08 64.3 90 38.9
Ah.15g097910 Amaranthus hybridus HOM05D012832 ORTHO05D019522 3.3e-07 59.7 97 42.3
Ah.15g098350 Amaranthus hybridus HOM05D012832 ORTHO05D019522 3.3e-07 59.7 97 42.3


User provided reference genes

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