Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung05455 Brassica carinata HOM05D004733 ORTHO05D005925 0.0e+00 1192.6 587 100.0
Sp7g34280 Schrenkiella parvula HOM05D004733 ORTHO05D005925 3.2e-267 924.9 511 90.2
BolC3t20259H Brassica oleracea HOM05D004733 ORTHO05D005925 3.5e-266 921.4 511 89.2
C03p80050 Brassica napus HOM05D004733 ORTHO05D005925 6.6e-265 917.1 511 89.0
A08p22270 Brassica napus HOM05D004733 ORTHO05D005925 1.6e-263 912.5 511 88.5
BraA08t34186Z Brassica rapa HOM05D004733 ORTHO05D005925 3.6e-263 911.4 511 88.3
Thhalv10024292m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 4.8e-263 911.0 511 88.1
BcaC01g00457 Brassica carinata HOM05D004733 ORTHO05D005925 3.5e-258 894.8 511 87.5
AL2G11330 Arabidopsis lyrata HOM05D004733 ORTHO05D005925 4.6e-258 894.4 512 87.1
Carub.0002s0104 Capsella rubella HOM05D004733 ORTHO05D005925 6.2e-255 884.0 512 85.4
AT1G63810 Arabidopsis thaliana HOM05D004733 ORTHO05D005925 2.4e-254 882.1 513 86.0
CARHR047390 Cardamine hirsuta HOM05D004733 ORTHO05D005925 1.6e-247 859.4 518 83.4
Aa31LG3G3780 Aethionema arabicum HOM05D004733 ORTHO05D005925 7.2e-227 790.8 511 77.3
THA.LOC104809497 Tarenaya hassleriana HOM05D004733 ORTHO05D005925 6.1e-226 787.7 516 75.6
Cpa.g.sc6.117 Carica papaya HOM05D004733 ORTHO05D005925 3.7e-207 725.3 513 69.0
A05p29530 Brassica napus HOM05D004733 ORTHO05D005925 1.3e-204 716.8 499 73.7
Ciclev10024776m.g Citrus clementina HOM05D004733 ORTHO05D005925 4.2e-203 711.8 509 68.0
A05p29760 Brassica napus HOM05D004733 ORTHO05D005925 2.3e-201 706.1 499 72.7
TWI77G0475 Tripterygium wilfordii HOM05D004733 ORTHO05D005925 3.2e-195 685.6 503 66.0
Atru.chr3.583 Acer truncatum HOM05D004733 ORTHO05D005925 7.2e-195 684.5 501 66.5
Manes.02G094400 Manihot esculenta HOM05D004733 ORTHO05D005925 1.2e-194 683.7 514 64.4
GSVIVG01018952001 Vitis vinifera HOM05D004733 ORTHO05D005925 2.6e-192 676.0 520 65.0
Hma1.2p1_0789F.1_g218390 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 8.3e-191 671.0 509 63.9
Thecc.01G034700 Theobroma cacao HOM05D004733 ORTHO05D005925 4.1e-190 668.7 513 64.1
CiPaw.02G018200 Carya illinoinensis HOM05D004733 ORTHO05D005925 9.1e-190 667.5 502 62.9
Prupe.7G155300 Prunus persica HOM05D004733 ORTHO05D005925 1.0e-188 664.1 502 62.5
VMungo1215G0507 Vigna mungo HOM05D004733 ORTHO05D005925 1.7e-188 663.3 513 61.6
FvH4_1g13250 Fragaria vesca HOM05D004733 ORTHO05D005925 3.8e-188 662.1 507 62.3
FAN19G0915 Fragaria x ananassa HOM05D004733 ORTHO05D005925 1.1e-187 660.6 507 62.3
RcHm_v2.0_Chr2g0101431 Rosa chinensis HOM05D004733 ORTHO05D005925 1.1e-187 660.6 507 62.1
arahy.Tifrunner.gnm1.ann1.VZ5KK1 Arachis hypogaea HOM05D004733 ORTHO05D005925 1.5e-187 660.2 501 63.9
CSS0026274 Camellia sinensis var. sinensis HOM05D004733 ORTHO05D005925 2.5e-187 659.4 516 62.8
Psat2g159520 Pisum sativum HOM05D004733 ORTHO05D005925 3.3e-187 659.1 500 61.8
Lj1g0005862 Lotus japonicus HOM05D004733 ORTHO05D005925 1.2e-186 657.1 501 62.1
arahy.Tifrunner.gnm1.ann1.6U5FTL Arachis hypogaea HOM05D004733 ORTHO05D005925 1.6e-186 656.8 501 63.3
Glyma.11G068600 Glycine max HOM05D004733 ORTHO05D005925 2.8e-186 656.0 513 61.2
PSO675G5282 Papaver somniferum HOM05D004733 ORTHO05D005925 3.6e-186 655.6 509 60.7
Gohir.A11G184100 Gossypium hirsutum HOM05D004733 ORTHO05D005925 1.0e-185 654.1 513 63.0
PGR119G1063 Punica granatum HOM05D004733 ORTHO05D005925 1.0e-185 654.1 533 59.8
Cfa004311 Carpinus fangiana HOM05D004733 ORTHO05D005925 1.4e-185 653.7 514 61.9
arahy.Tifrunner.gnm1.ann1.VB3WEH Arachis hypogaea HOM05D004733 ORTHO05D005925 1.8e-185 653.3 505 63.4
MD02G1146900 Malus domestica HOM05D004733 ORTHO05D005925 1.8e-185 653.3 513 62.0
Lalb_Chr16g0377811 Lupinus albus HOM05D004733 ORTHO05D005925 1.2e-184 650.6 501 61.7
Nn5g29624 Nelumbo nucifera HOM05D004733 ORTHO05D005925 1.2e-184 650.6 505 62.0
PSO541G3573 Papaver somniferum HOM05D004733 ORTHO05D005925 1.2e-184 650.6 509 60.7
Glyma.01G176400 Glycine max HOM05D004733 ORTHO05D005925 2.0e-184 649.8 513 61.0
Medtr5g020190 Medicago truncatula HOM05D004733 ORTHO05D005925 2.6e-184 649.4 503 60.0
Gohir.D11G190600 Gossypium hirsutum HOM05D004733 ORTHO05D005925 3.4e-184 649.0 513 62.6
Potri.007G024600 Populus trichocarpa HOM05D004733 ORTHO05D005925 9.8e-184 647.5 513 61.8
Phvul.002G030700 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 1.4e-182 643.7 513 60.8
Actinidia36563 Actinidia chinensis HOM05D004733 ORTHO05D005925 4.1e-182 642.1 516 61.8
Gorai.007G203100 Gossypium raimondii HOM05D004733 ORTHO05D005925 4.1e-182 642.1 513 62.2
Rhsim02G0060300 Rhododendron simsii HOM05D004733 ORTHO05D005925 2.3e-180 636.3 560 58.0
Ca_24849_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 4.3e-179 632.1 532 57.1
Duzib187G1802 Durio zibethinus HOM05D004733 ORTHO05D005925 7.3e-179 631.3 513 61.2
Aqoxy6G01122 Aquilegia oxysepala HOM05D004733 ORTHO05D005925 1.5e-176 623.6 520 58.5
Dinv39990 Davidia involucrata HOM05D004733 ORTHO05D005925 2.0e-176 623.2 531 59.7
Cc03_g11520 Coffea canephora HOM05D004733 ORTHO05D005925 8.3e-175 617.8 534 57.9
CANSAT78G0304 Cannabis sativa HOM05D004733 ORTHO05D005925 1.4e-174 617.1 523 58.1
COL.COLO4_08906 Corchorus olitorius HOM05D004733 ORTHO05D005925 1.4e-174 617.1 513 60.2
Sc03g0003000 Simmondsia chinensis HOM05D004733 ORTHO05D005925 1.4e-174 617.1 511 58.7
Sed0013525 Sechium edule HOM05D004733 ORTHO05D005925 3.2e-174 615.9 511 59.7
MELO3C022270.2 Cucumis melo HOM05D004733 ORTHO05D005925 1.2e-173 614.0 515 58.6
FAN23G1660 Fragaria x ananassa HOM05D004733 ORTHO05D005925 4.6e-173 612.1 507 59.2
CsaV3_5G036970 Cucumis sativus L. HOM05D004733 ORTHO05D005925 1.1e-171 607.4 515 58.3
ClCG06G002580 Citrullus lanatus HOM05D004733 ORTHO05D005925 2.5e-171 606.3 526 57.4
Lj4A201T52 Lonicera japonica HOM05D004733 ORTHO05D005925 1.6e-170 603.6 613 50.7
ECA232G2226 Erigeron canadensis HOM05D004733 ORTHO05D005925 2.1e-170 603.2 507 57.0
CsaV3_6G008550 Cucumis sativus L. HOM05D004733 ORTHO05D005925 2.8e-170 602.8 503 58.4
HanXRQChr09g0261511 Helianthus annuus HOM05D004733 ORTHO05D005925 6.8e-169 598.2 507 56.6
AUR62007571 Chenopodium quinoa HOM05D004733 ORTHO05D005925 1.2e-168 597.4 510 57.5
AUR62004057 Chenopodium quinoa HOM05D004733 ORTHO05D005925 1.5e-168 597.0 510 57.6
QL04p047829 Quercus lobata HOM05D004733 ORTHO05D005925 2.0e-168 596.7 534 57.5
Oeu017201.1 Olea europaea HOM05D004733 ORTHO05D005925 3.4e-168 595.9 562 53.6
Hund16432 Selenicereus undatus HOM05D004733 ORTHO05D005925 9.8e-168 594.3 524 56.3
EL10Ac6g15557 Beta vulgaris HOM05D004733 ORTHO05D005925 4.9e-167 592.0 510 56.7
Lsat_1_v5_gn_4_152020 Lactuca sativa HOM05D004733 ORTHO05D005925 6.4e-167 591.7 504 56.2
Hma1.2p1_0789F.1_g218380 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 8.3e-167 591.3 517 57.4
MBI14_g08060_MAGBIO Magnolia biondii HOM05D004733 ORTHO05D005925 7.8e-165 584.7 511 54.8
Nitab4.5_0000178g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 1.0e-164 584.3 522 56.3
Migut.H00986 Erythranthe guttata HOM05D004733 ORTHO05D005925 2.3e-164 583.2 516 55.6
Nitab4.5_0001385g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 8.6e-164 581.3 512 56.8
Solyc02g085230.3 Solanum lycopersicum HOM05D004733 ORTHO05D005925 1.9e-163 580.1 522 56.1
Sabra07G0021700 Salix brachista HOM05D004733 ORTHO05D005925 3.3e-163 579.3 554 54.2
Ah.03g140900 Amaranthus hybridus HOM05D004733 ORTHO05D005925 7.3e-163 578.2 510 55.3
Sopen02g029930 Solanum pennellii HOM05D004733 ORTHO05D005925 1.2e-162 577.4 522 55.7
SalBow2G0826 Salvia bowleyana HOM05D004733 ORTHO05D005925 4.7e-162 575.5 505 55.6
MSTRG.23523 Avicennia marina HOM05D004733 ORTHO05D005925 4.0e-161 572.4 523 53.7
Peaxi162Scf00366g00125 Petunia axillaris HOM05D004733 ORTHO05D005925 2.2e-159 566.6 516 55.6
vmacro15553 Vaccinium macrocarpon HOM05D004733 ORTHO05D005925 5.4e-158 562.0 554 53.8
ATR0665G204 Amborella trichopoda HOM05D004733 ORTHO05D005925 3.3e-155 552.7 506 53.8
SHI09115 Sapria himalayana HOM05D004733 ORTHO05D005925 3.3e-155 552.7 549 52.3
SGA_v2.0_scaffold54G19532 Striga asiatica HOM05D004733 ORTHO05D005925 9.9e-152 541.2 522 52.3
FAN28G2014 Fragaria x ananassa HOM05D004733 ORTHO05D005925 1.6e-149 533.9 507 53.6
Zm00001eb139270 Zea mays HOM05D004733 ORTHO05D005925 3.4e-144 516.2 482 51.9
CDE02G4373 Ceratophyllum demersum HOM05D004733 ORTHO05D005925 8.4e-143 511.5 516 49.8
TAR625G0290 Trochodendron aralioides HOM05D004733 ORTHO05D005925 6.4e-135 485.3 508 49.4
SEGI_35015 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 7.1e-134 481.9 508 48.2
Haze_15084 Corylus avellana HOM05D004733 ORTHO05D005925 1.2e-128 464.5 352 63.1
DCAR_017293 Daucus carota HOM05D004733 ORTHO05D005925 2.7e-125 453.4 505 48.5
Os12g0166500 Oryza sativa ssp. japonica HOM05D004733 ORTHO05D005925 4.3e-123 446.0 444 50.7
TPR.G8389 Trifolium pratense HOM05D004733 ORTHO05D005925 2.4e-121 440.3 341 61.3
Eucgr.I02440 Eucalyptus grandis HOM05D004733 ORTHO05D005925 1.9e-118 430.6 312 65.1
Pp3c6_25920 Physcomitrium patens HOM05D004733 ORTHO05D005925 6.7e-116 422.2 519 44.3
unitig_21.g20953 Utricularia gibba HOM05D004733 ORTHO05D005925 7.2e-110 402.1 514 43.0
Mapoly0060s0020 Marchantia polymorpha HOM05D004733 ORTHO05D005925 2.1e-109 400.6 508 43.1
CAN.G358.91 Capsicum annuum HOM05D004733 ORTHO05D005925 2.6e-104 383.6 344 55.8
SMO347G0575 Selaginella moellendorffii HOM05D004733 ORTHO05D005925 2.1e-93 347.4 527 40.0
HPP92_009474 Vanilla planifolia HOM05D004733 ORTHO05D005925 1.7e-87 327.8 511 39.9
C07p61790 Brassica napus HOM05D004733 ORTHO05D005925 5.5e-78 296.2 198 78.8
QL06p046231 Quercus lobata HOM05D004733 ORTHO05D005925 1.0e-71 275.4 193 65.8
CBR_g37736 Chara braunii HOM05D004733 ORTHO05D000048 8.9e-68 262.3 503 32.6
Actinidia12125 Actinidia chinensis HOM05D004733 ORTHO05D005925 4.4e-67 260.0 207 60.9
Ca_24844_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 4.1e-65 253.4 283 47.0
arahy.Tifrunner.gnm1.ann1.T3TR42 Arachis hypogaea HOM05D004733 ORTHO05D005925 1.0e-60 238.8 244 50.0
CAN.G3433.1 Capsicum annuum HOM05D004733 ORTHO05D005925 1.5e-59 235.0 198 56.6
CAN.G358.87 Capsicum annuum HOM05D004733 ORTHO05D005925 1.5e-59 235.0 198 56.6
MCO15G114 Micromonas commoda HOM05D004733 ORTHO05D005925 1.7e-55 221.5 420 34.5
arahy.Tifrunner.gnm1.ann1.VLQ9MW Arachis hypogaea HOM05D004733 ORTHO05D005925 1.5e-54 218.4 238 48.3
Phvul.011G118815 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 2.1e-53 214.5 153 66.0
AagrBONN_evm.TU.Sc2ySwM_228.918 Anthoceros agrestis HOM05D004733 ORTHO05D005925 1.8e-52 211.5 289 37.0
SEGI_33720 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 9.8e-51 205.7 194 50.5
TPR.G22288 Trifolium pratense HOM05D004733 ORTHO05D005925 9.8e-51 205.7 157 60.5
QL02p065465 Quercus lobata HOM05D004733 ORTHO05D005925 1.6e-45 188.3 122 69.7
Cre07.g332800 Chlamydomonas reinhardtii HOM05D004733 ORTHO05D005925 9.9e-43 179.1 643 25.8
AagrBONN_evm.TU.Sc2ySwM_228.917 Anthoceros agrestis HOM05D004733 ORTHO05D005925 7.3e-38 162.9 192 44.8
Cfa025732 Carpinus fangiana HOM05D004733 ORTHO05D005925 9.9e-35 152.5 527 27.7
C07p61800 Brassica napus HOM05D004733 ORTHO05D005925 5.6e-30 136.7 108 65.7
PRCOL_00003562 Prasinoderma coloniale HOM05D004733 ORTHO05D005925 2.2e-26 124.8 583 25.4
RcHm_v2.0_Chr5g0064711 Rosa chinensis HOM05D004733 ORTHO05D005925 3.3e-22 110.9 163 36.8
C05p48270 Brassica napus HOM05D004733 ORTHO05D005925 2.1e-21 108.2 104 56.7
QL06p046242 Quercus lobata HOM05D004733 ORTHO05D005925 1.5e-19 102.1 95 50.5
A05p29540 Brassica napus HOM05D004733 ORTHO05D005925 1.4e-17 95.5 80 66.2
Thhalv10021392m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 1.1e-14 85.9 52 71.2
Haze_15083 Corylus avellana HOM05D004733 ORTHO05D005925 1.3e-13 82.4 106 44.3
MD15G1261100 Malus domestica HOM05D004733 ORTHO05D005925 1.8e-12 78.6 62 53.2
RcHm_v2.0_Chr2g0101471 Rosa chinensis HOM05D004733 ORTHO05D005925 3.1e-12 77.8 70 55.7
A05p29560 Brassica napus HOM05D004733 ORTHO05D005925 5.3e-12 77.0 74 55.4
A05p29770 Brassica napus HOM05D004733 ORTHO05D005925 5.3e-12 77.0 74 55.4
QL06p046224 Quercus lobata HOM05D004733 ORTHO05D005925 2.9e-10 71.2 77 44.2
HPP92_009475 Vanilla planifolia HOM05D004733 ORTHO05D005925 2.5e-09 68.2 67 47.8
Cc03_g11510 Coffea canephora HOM05D004733 ORTHO05D005925 4.2e-09 67.4 72 45.8
Hma1.2p1_0400F.1_g144360 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 4.6e-08 63.9 49 59.2
Aa31LG3G3760 Aethionema arabicum HOM05D004733 ORTHO05D005925 6.0e-08 63.5 35 77.1
CAN.G358.90 Capsicum annuum HOM05D004733 ORTHO05D005925 2.3e-07 61.6 59 49.2


User provided reference genes

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