Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung05361 Brassica carinata HOM05D005438 ORTHO05D006744 9.4e-188 660.2 377 100.0
BcaC04g22519 Brassica carinata HOM05D005438 ORTHO05D006744 2.6e-65 253.4 220 76.4
BcaC04g22661 Brassica carinata HOM05D005438 ORTHO05D006744 1.3e-59 234.6 206 75.7
AT1G63980 Arabidopsis thaliana HOM05D005438 ORTHO05D006744 3.7e-59 233.0 187 81.8
A09p15160 Brassica napus HOM05D005438 ORTHO05D006744 3.7e-59 233.0 219 73.1
BraA09t37158Z Brassica rapa HOM05D005438 ORTHO05D006744 3.7e-59 233.0 219 74.0
C09p18360 Brassica napus HOM05D005438 ORTHO05D006744 6.3e-59 232.3 212 75.0
BolC9t54729H Brassica oleracea HOM05D005438 ORTHO05D006744 6.3e-59 232.3 212 75.0
BolC9t54592H Brassica oleracea HOM05D005438 ORTHO05D006744 1.4e-58 231.1 206 74.8
C09p16950 Brassica napus HOM05D005438 ORTHO05D006744 2.4e-58 230.3 206 74.3
AL2G11130 Arabidopsis lyrata HOM05D005438 ORTHO05D006744 3.1e-58 229.9 187 79.7
Carub.0002s0086 Capsella rubella HOM05D005438 ORTHO05D006744 7.0e-58 228.8 187 79.7
BcaB07g31532 Brassica carinata HOM05D005438 ORTHO05D006744 9.1e-58 228.4 211 73.9
A09p14060 Brassica napus HOM05D005438 ORTHO05D006744 1.2e-57 228.0 206 72.3
BraA09t37053Z Brassica rapa HOM05D005438 ORTHO05D006744 1.2e-57 228.0 206 72.3
BcaB07g31422 Brassica carinata HOM05D005438 ORTHO05D006744 5.0e-56 222.6 207 75.4
CARHR047000 Cardamine hirsuta HOM05D005438 ORTHO05D006744 6.5e-56 222.2 187 78.1
Aa31LG2G1070 Aethionema arabicum HOM05D005438 ORTHO05D006744 1.1e-55 221.5 190 74.2
Thhalv10023525m.g Eutrema salsugineum HOM05D005438 ORTHO05D006744 1.5e-55 221.1 188 73.4
Sp2g00710 Schrenkiella parvula HOM05D005438 ORTHO05D006744 1.3e-51 208.0 211 72.0
THA.LOC104817794 Tarenaya hassleriana HOM05D005438 ORTHO05D006744 2.0e-44 184.1 198 62.6
Potri.003G132600 Populus trichocarpa HOM05D005438 ORTHO05D006744 1.9e-39 167.5 223 49.8
COL.COLO4_08362 Corchorus olitorius HOM05D005438 ORTHO05D006744 2.8e-38 163.7 198 51.0
Atru.chr9.2115 Acer truncatum HOM05D005438 ORTHO05D006744 8.0e-38 162.2 206 55.3
Atru.BG.199.p Acer truncatum HOM05D005438 ORTHO05D006744 1.0e-37 161.8 199 55.8
Sabra03G0095000 Salix brachista HOM05D005438 ORTHO05D006744 2.3e-37 160.6 222 50.5
FvH4_5g03190 Fragaria vesca HOM05D005438 ORTHO05D006744 5.2e-37 159.5 195 49.7
FAN13G0364 Fragaria x ananassa HOM05D005438 ORTHO05D006744 6.8e-37 159.1 189 49.7
FAN18G2027 Fragaria x ananassa HOM05D005438 ORTHO05D006744 8.9e-37 158.7 195 49.7
FAN08G1515 Fragaria x ananassa HOM05D005438 ORTHO05D006744 4.4e-36 156.4 197 49.2
MD14G1111900 Malus domestica HOM05D005438 ORTHO05D006744 2.2e-35 154.1 195 48.7
Prupe.5G106500 Prunus persica HOM05D005438 ORTHO05D006744 3.7e-35 153.3 195 49.7
arahy.Tifrunner.gnm1.ann1.I29YTG Arachis hypogaea HOM05D005438 ORTHO05D006744 8.3e-35 152.1 194 49.5
arahy.Tifrunner.gnm1.ann1.Y7QUAU Arachis hypogaea HOM05D005438 ORTHO05D006744 8.3e-35 152.1 193 48.7
TWI60G1446 Tripterygium wilfordii HOM05D005438 ORTHO05D006744 8.3e-35 152.1 197 49.7
Psat7g029680 Pisum sativum HOM05D005438 ORTHO05D006744 1.1e-34 151.8 192 49.5
Gorai.003G085600 Gossypium raimondii HOM05D005438 ORTHO05D006744 1.4e-34 151.4 206 48.5
Glyma.05G211800 Glycine max HOM05D005438 ORTHO05D006744 1.8e-34 151.0 197 49.2
Gohir.D03G078500 Gossypium hirsutum HOM05D005438 ORTHO05D006744 1.8e-34 151.0 198 48.5
Thecc.03G286500 Theobroma cacao HOM05D005438 ORTHO05D006744 1.8e-34 151.0 192 49.5
Ciclev10020644m.g Citrus clementina HOM05D005438 ORTHO05D006744 2.4e-34 150.6 172 53.5
Lsat_1_v5_gn_1_49360 Lactuca sativa HOM05D005438 ORTHO05D006744 2.4e-34 150.6 197 46.2
Lsat_1_v5_gn_3_8761 Lactuca sativa HOM05D005438 ORTHO05D006744 2.4e-34 150.6 196 46.4
Lsat_1_v5_gn_5_103140 Lactuca sativa HOM05D005438 ORTHO05D006744 2.4e-34 150.6 197 46.2
Lsat_1_v5_gn_9_38321 Lactuca sativa HOM05D005438 ORTHO05D006744 2.4e-34 150.6 197 46.2
GSVIVG01019417001 Vitis vinifera HOM05D005438 ORTHO05D006744 3.2e-34 150.2 199 46.2
Glyma.08G018100 Glycine max HOM05D005438 ORTHO05D006744 4.1e-34 149.8 197 48.7
Ca_10950_v3 Cicer arietinum L. HOM05D005438 ORTHO05D006744 7.0e-34 149.1 201 47.8
Gohir.A02G105300 Gossypium hirsutum HOM05D005438 ORTHO05D006744 9.2e-34 148.7 207 47.8
Duzib084G0802 Durio zibethinus HOM05D005438 ORTHO05D006744 1.6e-33 147.9 200 47.5
Phvul.002G293100 Phaseolus vulgaris HOM05D005438 ORTHO05D006744 1.6e-33 147.9 195 48.7
Rhsim02G0235700 Rhododendron simsii HOM05D005438 ORTHO05D006744 2.0e-33 147.5 199 45.2
FAN04G0810 Fragaria x ananassa HOM05D005438 ORTHO05D006744 2.7e-33 147.1 189 48.1
QL12p031793 Quercus lobata HOM05D005438 ORTHO05D006744 2.7e-33 147.1 205 45.4
RcHm_v2.0_Chr7g0196591 Rosa chinensis HOM05D005438 ORTHO05D006744 2.7e-33 147.1 195 47.7
CANSAT21G0041 Cannabis sativa HOM05D005438 ORTHO05D006744 4.6e-33 146.4 188 47.9
Sed0027839 Sechium edule HOM05D005438 ORTHO05D006744 4.6e-33 146.4 203 48.8
vmacro11410 Vaccinium macrocarpon HOM05D005438 ORTHO05D006744 4.6e-33 146.4 199 46.7
MD06G1091000 Malus domestica HOM05D005438 ORTHO05D006744 5.9e-33 146.0 203 45.3
CiPaw.11G129800 Carya illinoinensis HOM05D005438 ORTHO05D006744 7.8e-33 145.6 199 45.2
Medtr8g098940 Medicago truncatula HOM05D005438 ORTHO05D006744 7.8e-33 145.6 192 47.9
VMungo0251G0328 Vigna mungo HOM05D005438 ORTHO05D006744 1.7e-32 144.4 201 47.8
Lalb_Chr05g0224491 Lupinus albus HOM05D005438 ORTHO05D006744 3.0e-32 143.7 192 50.0
Lj4g0011941 Lotus japonicus HOM05D005438 ORTHO05D006744 5.0e-32 142.9 194 45.9
TAR374G1319 Trochodendron aralioides HOM05D005438 ORTHO05D006744 5.0e-32 142.9 191 45.5
Actinidia10609 Actinidia chinensis HOM05D005438 ORTHO05D006744 6.6e-32 142.5 206 43.7
Peaxi162Scf00074g01737 Petunia axillaris HOM05D005438 ORTHO05D006744 6.6e-32 142.5 199 47.2
ClCG01G002320 Citrullus lanatus HOM05D005438 ORTHO05D006744 8.6e-32 142.1 210 45.7
Cc08_g15250 Coffea canephora HOM05D005438 ORTHO05D006744 1.1e-31 141.7 204 44.6
DCAR_004611 Daucus carota HOM05D005438 ORTHO05D006744 1.1e-31 141.7 193 53.4
Dinv37597 Davidia involucrata HOM05D005438 ORTHO05D006744 1.5e-31 141.4 199 44.7
Lj2C178T12 Lonicera japonica HOM05D005438 ORTHO05D006744 1.5e-31 141.4 193 45.1
Gorai.008G250200 Gossypium raimondii HOM05D005438 ORTHO05D006744 2.5e-31 140.6 200 46.5
AUR62019752 Chenopodium quinoa HOM05D005438 ORTHO05D006744 4.3e-31 139.8 203 43.3
TPR.G12953 Trifolium pratense HOM05D005438 ORTHO05D006744 9.5e-31 138.7 195 46.2
Duzib205G0010 Durio zibethinus HOM05D005438 ORTHO05D006744 1.2e-30 138.3 199 46.7
Hund11433 Selenicereus undatus HOM05D005438 ORTHO05D006744 1.2e-30 138.3 199 41.7
PGSC0003DMG400012320 Solanum tuberosum HOM05D005438 ORTHO05D006744 1.6e-30 137.9 199 44.7
CSS0046697 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 2.1e-30 137.5 206 45.1
CsaV3_5G002390 Cucumis sativus L. HOM05D005438 ORTHO05D006744 2.1e-30 137.5 210 44.8
Gohir.D12G233900 Gossypium hirsutum HOM05D005438 ORTHO05D006744 2.8e-30 137.1 200 47.0
CAN.G532.38 Capsicum annuum HOM05D005438 ORTHO05D006744 6.2e-30 136.0 199 43.7
ECA233G5263 Erigeron canadensis HOM05D005438 ORTHO05D006744 6.2e-30 136.0 200 45.5
MELO3C005715.2 Cucumis melo HOM05D005438 ORTHO05D006744 8.0e-30 135.6 210 43.8
AUR62010754 Chenopodium quinoa HOM05D005438 ORTHO05D006744 1.0e-29 135.2 205 42.0
Manes.01G057900 Manihot esculenta HOM05D005438 ORTHO05D006744 1.0e-29 135.2 218 41.3
Nitab4.5_0003015g0090 Nicotiana tabacum HOM05D005438 ORTHO05D006744 1.0e-29 135.2 208 43.8
Solyc08g081580.4 Solanum lycopersicum HOM05D005438 ORTHO05D006744 1.4e-29 134.8 198 43.4
PGR031G2565 Punica granatum HOM05D005438 ORTHO05D006744 1.8e-29 134.4 222 40.1
Sopen08g029890 Solanum pennellii HOM05D005438 ORTHO05D006744 3.1e-29 133.7 199 43.7
Nitab4.5_0007906g0070 Nicotiana tabacum HOM05D005438 ORTHO05D006744 4.0e-29 133.3 199 43.2
SGA_v2.0_scaffold173G39139 Striga asiatica HOM05D005438 ORTHO05D006744 1.2e-28 131.7 192 45.3
Migut.J01399 Erythranthe guttata HOM05D005438 ORTHO05D006744 2.0e-28 131.0 211 46.0
Eucgr.L02379 Eucalyptus grandis HOM05D005438 ORTHO05D006744 9.8e-28 128.6 259 39.0
SEGI_20773 Sequoiadendron giganteum HOM05D005438 ORTHO05D006744 9.8e-28 128.6 227 37.0
Eucgr.D01812 Eucalyptus grandis HOM05D005438 ORTHO05D006744 1.3e-27 128.3 259 39.0
HanXRQChr02g0049721 Helianthus annuus HOM05D005438 ORTHO05D006744 1.3e-27 128.3 201 45.3
EL10Ac5g12834 Beta vulgaris HOM05D005438 ORTHO05D006744 1.7e-27 127.9 197 42.6
Nn1g01673 Nelumbo nucifera HOM05D005438 ORTHO05D006744 2.2e-27 127.5 232 40.9
MBI11_g09068_MAGBIO Magnolia biondii HOM05D005438 ORTHO05D006744 2.9e-27 127.1 157 48.4
Aqoxy7G00195 Aquilegia oxysepala HOM05D005438 ORTHO05D006744 4.9e-27 126.3 198 42.4
Ah.12g051920 Amaranthus hybridus HOM05D005438 ORTHO05D006744 1.1e-26 125.2 201 46.3
Zm00001eb001860 Zea mays HOM05D005438 ORTHO05D006744 1.9e-26 124.4 190 41.6
PSO017G3503 Papaver somniferum HOM05D005438 ORTHO05D006744 4.1e-26 123.2 195 48.2
Os03g0125300 Oryza sativa ssp. japonica HOM05D005438 ORTHO05D006744 9.2e-26 122.1 192 45.3
PSO478G3903 Papaver somniferum HOM05D005438 ORTHO05D006744 1.6e-25 121.3 201 48.8
PSO266G0069 Papaver somniferum HOM05D005438 ORTHO05D006744 4.6e-25 119.8 201 48.8
Migut.A00720 Erythranthe guttata HOM05D005438 ORTHO05D006744 1.3e-24 118.2 202 44.6
CDE04G0809 Ceratophyllum demersum HOM05D005438 ORTHO05D006744 5.0e-24 116.3 196 38.8
HPP92_021018 Vanilla planifolia HOM05D005438 ORTHO05D006744 7.3e-23 112.5 201 38.3
Gohir.A12G233400 Gossypium hirsutum HOM05D005438 ORTHO05D006744 1.8e-21 107.8 194 41.8
ATR0661G541 Amborella trichopoda HOM05D005438 ORTHO05D006744 3.4e-20 103.6 219 35.6
Cpa.g.c39085 Carica papaya HOM05D005438 ORTHO05D006744 1.7e-19 101.3 142 45.8
Sc01g0009850 Simmondsia chinensis HOM05D005438 ORTHO05D006744 1.1e-18 98.6 133 44.4
HanXRQChr17g0533211 Helianthus annuus HOM05D005438 ORTHO05D006744 9.2e-18 95.5 177 51.4
Haze_08758 Corylus avellana HOM05D005438 ORTHO05D006744 2.5e-15 87.4 76 56.6
unitig_32.g10979 Utricularia gibba HOM05D005438 ORTHO05D006744 3.3e-15 87.0 144 43.1
CSS0015982 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 1.1e-13 82.0 199 38.2
Pp3c2_28530 Physcomitrium patens HOM05D005438 ORTHO05D006744 1.4e-10 71.6 180 36.7
AagrBONN_evm.TU.Sc2ySwM_344.4712 Anthoceros agrestis HOM05D005438 ORTHO05D006744 2.4e-10 70.9 216 31.0
Pp3c7_27020 Physcomitrium patens HOM05D005438 ORTHO05D006744 9.2e-10 68.9 210 33.8
ATR0661G444 Amborella trichopoda HOM05D005438 ORTHO05D006744 1.2e-09 68.6 177 32.2
Mapoly0090s0083 Marchantia polymorpha HOM05D005438 ORTHO05D006744 1.2e-09 68.6 220 34.5
BcaC03g14208 Brassica carinata HOM05D002078 ORTHO05D005680 3.5e-09 67.0 79 50.6
BcaC01g00653 Brassica carinata HOM05D002078 ORTHO05D010191 1.7e-08 64.7 79 49.4
ClCG01G002340 Citrullus lanatus HOM05D005438 ORTHO05D006744 1.7e-08 64.7 159 30.8
BcaC05g28194 Brassica carinata HOM05D002078 ORTHO05D010191 3.0e-08 63.9 79 51.9
BcaC04g20590 Brassica carinata HOM05D002078 ORTHO05D010191 3.9e-08 63.5 95 45.3
BcaC09g50419 Brassica carinata HOM05D002078 ORTHO05D010191 3.9e-08 63.5 79 48.1
BcaC06g35883 Brassica carinata HOM05D002078 ORTHO05D005680 5.1e-08 63.2 79 49.4
CBR_g35011 Chara braunii HOM05D005438 ORTHO05D006744 5.1e-08 63.2 64 50.0
BcaC04g21351 Brassica carinata HOM05D002078 ORTHO05D005680 6.6e-08 62.8 80 50.0
BcaC09g49691 Brassica carinata HOM05D002078 ORTHO05D010191 1.5e-07 61.6 95 44.2
BcaC03g16211 Brassica carinata HOM05D002078 ORTHO05D010191 1.9e-07 61.2 95 45.3
BcaC05g28690 Brassica carinata HOM05D002078 ORTHO05D005680 1.9e-07 61.2 79 48.1
BcaC03g17328 Brassica carinata HOM05D002078 ORTHO05D005680 2.5e-07 60.8 95 43.2
Actinidia28345 Actinidia chinensis HOM05D005438 ORTHO05D006744 5.6e-07 59.7 55 56.4
SMO134G0098 Selaginella moellendorffii HOM05D005438 ORTHO05D006744 1.2e-06 58.5 187 26.7
BcaC05g26934 Brassica carinata HOM05D002078 ORTHO05D005680 1.6e-06 58.2 79 46.8
BcaC03g16104 Brassica carinata HOM05D002078 ORTHO05D005680 2.1e-06 57.8 78 46.2


User provided reference genes

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