Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung05359 Brassica carinata HOM05D005277 ORTHO05D006319 4.2e-30 134.0 67 100.0
C09p00490 Brassica napus HOM05D005277 ORTHO05D006319 2.2e-23 111.7 66 84.8
BolC9t52983H Brassica oleracea HOM05D005277 ORTHO05D006319 2.9e-23 111.3 66 86.4
BraA09t35720Z Brassica rapa HOM05D005277 ORTHO05D006319 3.8e-23 110.9 59 93.2
A09p00410 Brassica napus HOM05D005277 ORTHO05D006319 8.4e-23 109.8 56 94.6
BcaC01g06868 Brassica carinata HOM05D005277 ORTHO05D006319 1.4e-22 109.0 54 94.4
BcaNung05357 Brassica carinata HOM05D005277 ORTHO05D006319 1.4e-22 109.0 54 94.4
BolC3t16185H Brassica oleracea HOM05D005277 ORTHO05D006319 1.4e-22 109.0 58 91.4
C03p39140 Brassica napus HOM05D005277 ORTHO05D006319 2.4e-22 108.2 54 96.3
BcaC04g24159 Brassica carinata HOM05D005277 ORTHO05D006319 3.2e-22 107.8 54 96.3
A03p65670 Brassica napus HOM05D005277 ORTHO05D006319 5.4e-22 107.1 52 94.2
BraA03t15618Z Brassica rapa HOM05D005277 ORTHO05D006319 5.4e-22 107.1 52 94.2
A03p32120 Brassica napus HOM05D005277 ORTHO05D006319 7.1e-22 106.7 55 94.5
BraA03t12382Z Brassica rapa HOM05D005277 ORTHO05D006319 7.1e-22 106.7 55 94.5
BcaNung07162 Brassica carinata HOM05D005277 ORTHO05D006319 9.3e-22 106.3 54 94.4
BcaB01g02260 Brassica carinata HOM05D005277 ORTHO05D006319 1.2e-21 105.9 59 88.1
C07p62700 Brassica napus HOM05D005277 ORTHO05D006319 2.1e-21 105.1 57 89.5
BolC7t46684H Brassica oleracea HOM05D005277 ORTHO05D006319 2.1e-21 105.1 57 89.5
FAN03G2608 Fragaria x ananassa HOM05D005277 ORTHO05D006319 6.0e-21 103.6 54 90.7
RcHm_v2.0_Chr1g0353261 Rosa chinensis HOM05D005277 ORTHO05D006319 6.0e-21 103.6 53 90.6
RcHm_v2.0_Chr1g0353371 Rosa chinensis HOM05D005277 ORTHO05D006319 6.0e-21 103.6 53 90.6
Ah.05g176400 Amaranthus hybridus HOM05D005277 ORTHO05D006319 7.9e-21 103.2 54 81.5
Potri.002G155800 Populus trichocarpa HOM05D005277 ORTHO05D006319 1.0e-20 102.8 53 88.7
Potri.014G079800 Populus trichocarpa HOM05D005277 ORTHO05D006319 1.0e-20 102.8 53 88.7
RcHm_v2.0_Chr0c39g0503241 Rosa chinensis HOM05D005277 ORTHO05D006319 1.3e-20 102.4 55 87.3
RcHm_v2.0_Chr1g0353201 Rosa chinensis HOM05D005277 ORTHO05D006319 1.3e-20 102.4 55 87.3
RcHm_v2.0_Chr1g0353351 Rosa chinensis HOM05D005277 ORTHO05D006319 1.3e-20 102.4 53 88.7
CARHR248750 Cardamine hirsuta HOM05D005277 ORTHO05D006319 1.8e-20 102.1 53 90.6
Thhalv10026679m.g Eutrema salsugineum HOM05D005277 ORTHO05D006319 1.8e-20 102.1 53 90.6
Thhalv10029049m.g Eutrema salsugineum HOM05D005277 ORTHO05D006319 1.8e-20 102.1 53 90.6
FAN01G0371 Fragaria x ananassa HOM05D005277 ORTHO05D006319 2.3e-20 101.7 53 90.6
FAN06G3712 Fragaria x ananassa HOM05D005277 ORTHO05D006319 2.3e-20 101.7 53 90.6
FAN06G3877 Fragaria x ananassa HOM05D005277 ORTHO05D006319 2.3e-20 101.7 53 90.6
Oeu021782.1 Olea europaea HOM05D005277 ORTHO05D006319 2.3e-20 101.7 53 86.8
Sp6g00620 Schrenkiella parvula HOM05D005277 ORTHO05D006319 2.3e-20 101.7 53 88.7
Prupe.2G159900 Prunus persica HOM05D005277 ORTHO05D006319 3.0e-20 101.3 52 86.5
Manes.05G038000 Manihot esculenta HOM05D005277 ORTHO05D006319 5.1e-20 100.5 53 86.8
Manes.01G260200 Manihot esculenta HOM05D005277 ORTHO05D006319 6.7e-20 100.1 53 86.8
Nn1g01427 Nelumbo nucifera HOM05D005277 ORTHO05D006319 6.7e-20 100.1 51 86.3
Sp7g35520 Schrenkiella parvula HOM05D002845 ORTHO05D006319 6.7e-20 100.1 55 85.5
Cpa.g.c32742 Carica papaya HOM05D005277 ORTHO05D006319 8.7e-20 99.8 60 78.3
MD01G1052300 Malus domestica HOM05D005277 ORTHO05D006319 8.7e-20 99.8 53 86.8
Sed0005058 Sechium edule HOM05D005277 ORTHO05D006319 8.7e-20 99.8 53 86.8
EL10Ac1g00522 Beta vulgaris HOM05D005277 ORTHO05D006319 1.1e-19 99.4 53 81.1
Gohir.A08G129800 Gossypium hirsutum HOM05D005277 ORTHO05D006319 1.1e-19 99.4 55 87.3
Rhsim03G0179700 Rhododendron simsii HOM05D005277 ORTHO05D006319 1.1e-19 99.4 62 74.2
THA.LOC104817018 Tarenaya hassleriana HOM05D005277 ORTHO05D006319 1.1e-19 99.4 53 86.8
Carub.0006s3664 Capsella rubella HOM05D005277 ORTHO05D006319 1.5e-19 99.0 53 86.8
Aa31LG5G410 Aethionema arabicum HOM05D005277 ORTHO05D006319 1.9e-19 98.6 53 86.8
Os09g0560300 Oryza sativa ssp. japonica HOM05D005277 ORTHO05D006319 1.9e-19 98.6 54 87.0
AUR62004311 Chenopodium quinoa HOM05D005277 ORTHO05D006319 2.5e-19 98.2 57 77.2
Sabra14G0058000 Salix brachista HOM05D005277 ORTHO05D006319 2.5e-19 98.2 55 83.6
Sc23g0003110 Simmondsia chinensis HOM05D005277 ORTHO05D006319 2.5e-19 98.2 56 82.1
THA.LOC104801449 Tarenaya hassleriana HOM05D005277 ORTHO05D006319 2.5e-19 98.2 53 84.9
Haze_15461 Corylus avellana HOM05D005277 ORTHO05D006319 3.3e-19 97.8 53 83.0
Hma1.2p1_2482F.1_g323010 Hydrangea macrophylla HOM05D005277 ORTHO05D006319 3.3e-19 97.8 65 73.8
SHI13469 Sapria himalayana HOM05D005277 ORTHO05D006319 3.3e-19 97.8 54 81.5
Cfa003961 Carpinus fangiana HOM05D005277 ORTHO05D006319 4.3e-19 97.4 52 84.6
AUR62022763 Chenopodium quinoa HOM05D005277 ORTHO05D006319 4.3e-19 97.4 57 77.2
Gohir.D07G149400 Gossypium hirsutum HOM05D005277 ORTHO05D006319 4.3e-19 97.4 56 83.9
Gorai.001G170800 Gossypium raimondii HOM05D005277 ORTHO05D006319 4.3e-19 97.4 56 83.9
Lalb_Chr19g0127071 Lupinus albus HOM05D005277 ORTHO05D006319 4.3e-19 97.4 60 76.7
MBI07_g12793_MAGBIO Magnolia biondii HOM05D005277 ORTHO05D006319 4.3e-19 97.4 51 82.4
QL08p049830 Quercus lobata HOM05D005277 ORTHO05D006319 4.3e-19 97.4 55 83.6
Hund27308 Selenicereus undatus HOM05D005277 ORTHO05D006319 4.3e-19 97.4 68 72.1
Zm00001eb320330 Zea mays HOM05D005277 ORTHO05D006319 4.3e-19 97.4 54 81.5
arahy.Tifrunner.gnm1.ann1.A7XXX8 Arachis hypogaea HOM05D005277 ORTHO05D006319 5.6e-19 97.1 62 72.6
arahy.Tifrunner.gnm1.ann1.I9WHAY Arachis hypogaea HOM05D005277 ORTHO05D006319 5.6e-19 97.1 62 72.6
CiPaw.02G027600 Carya illinoinensis HOM05D005277 ORTHO05D006319 5.6e-19 97.1 52 84.6
Duzib138G0488 Durio zibethinus HOM05D005277 ORTHO05D006319 5.6e-19 97.1 57 82.5
Gohir.A07G143600 Gossypium hirsutum HOM05D005277 ORTHO05D006319 5.6e-19 97.1 58 81.0
Gorai.004G156900 Gossypium raimondii HOM05D005277 ORTHO05D006319 7.4e-19 96.7 57 82.5
Zm00001eb104680 Zea mays HOM05D005277 ORTHO05D006319 7.4e-19 96.7 53 83.0
Atru.chr5.442 Acer truncatum HOM05D005277 ORTHO05D006319 1.3e-18 95.9 61 75.4
CSS0040378 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 1.3e-18 95.9 64 71.9
ClCG11G004150 Citrullus lanatus HOM05D005277 ORTHO05D006319 1.3e-18 95.9 47 89.4
Duzib133G1303 Durio zibethinus HOM05D005277 ORTHO05D006319 1.3e-18 95.9 57 80.7
AL6G52850 Arabidopsis lyrata HOM05D005277 ORTHO05D006319 1.6e-18 95.5 57 82.5
Hund16947 Selenicereus undatus HOM05D005277 ORTHO05D006319 1.6e-18 95.5 56 78.6
Actinidia32868 Actinidia chinensis HOM05D005277 ORTHO05D006319 2.1e-18 95.1 53 79.2
MELO3C023322.2 Cucumis melo HOM05D005277 ORTHO05D006319 2.1e-18 95.1 57 80.7
Actinidia34103 Actinidia chinensis HOM05D005277 ORTHO05D006319 2.8e-18 94.7 53 79.2
CDE05G2617 Ceratophyllum demersum HOM05D005277 ORTHO05D006319 2.8e-18 94.7 59 76.3
Sc02g0002070 Simmondsia chinensis HOM05D003698 ORTHO05D004320 2.8e-18 94.7 57 77.2
Thecc.01G365200 Theobroma cacao HOM05D005277 ORTHO05D006319 2.8e-18 94.7 55 83.6
MBI06_g06483_MAGBIO Magnolia biondii HOM05D005277 ORTHO05D006319 3.6e-18 94.4 52 78.8
CsaV3_2G015020 Cucumis sativus L. HOM05D005277 ORTHO05D006319 4.8e-18 94.0 57 78.9
GSVIVG01026823001 Vitis vinifera HOM05D005277 ORTHO05D006319 4.8e-18 94.0 59 76.3
CDE06G0676 Ceratophyllum demersum HOM05D005277 ORTHO05D006319 6.2e-18 93.6 56 78.6
Ciclev10023111m.g Citrus clementina HOM05D005277 ORTHO05D006319 6.2e-18 93.6 52 80.8
Migut.F00352 Erythranthe guttata HOM05D005277 ORTHO05D006319 6.2e-18 93.6 59 74.6
Lsat_1_v5_gn_8_8281 Lactuca sativa HOM05D005277 ORTHO05D006319 6.2e-18 93.6 49 83.7
Glyma.18G229200 Glycine max HOM05D005277 ORTHO05D006319 1.1e-17 92.8 46 87.0
Nitab4.5_0000716g0150 Nicotiana tabacum HOM05D005277 ORTHO05D006319 1.1e-17 92.8 53 75.5
Nitab4.5_0003365g0020 Nicotiana tabacum HOM05D005277 ORTHO05D006319 1.1e-17 92.8 53 75.5
Peaxi162Scf00915g00031 Petunia axillaris HOM05D005277 ORTHO05D006319 1.1e-17 92.8 49 79.6
Phvul.008G068800 Phaseolus vulgaris HOM05D005277 ORTHO05D006319 1.1e-17 92.8 59 76.3
Glyma.09G263000 Glycine max HOM05D005277 ORTHO05D006319 1.4e-17 92.4 46 87.0
TWI59G0525 Tripterygium wilfordii HOM05D005277 ORTHO05D006319 1.4e-17 92.4 55 80.0
unitig_0.g2484 Utricularia gibba HOM05D002154 ORTHO05D002362 1.4e-17 92.4 48 81.2
CiPaw.01G056300 Carya illinoinensis HOM05D005277 ORTHO05D006319 1.8e-17 92.0 52 80.8
Gohir.D08G151200 Gossypium hirsutum HOM05D005277 ORTHO05D006319 1.8e-17 92.0 59 76.3
Lj1g0008169 Lotus japonicus HOM05D005277 ORTHO05D006319 1.8e-17 92.0 60 75.0
Nitab4.5_0008315g0010 Nicotiana tabacum HOM05D005277 ORTHO05D006319 1.8e-17 92.0 53 73.6
Peaxi162Scf01969g00020 Petunia axillaris HOM05D005277 ORTHO05D006319 1.8e-17 92.0 57 73.7
Sed0006100 Sechium edule HOM05D005277 ORTHO05D006319 1.8e-17 92.0 55 78.2
ECA233G3829 Erigeron canadensis HOM05D005277 ORTHO05D006319 2.4e-17 91.7 58 74.1
HanXRQChr08g0209231 Helianthus annuus HOM05D005277 ORTHO05D006319 2.4e-17 91.7 53 77.4
HPP92_028083 Vanilla planifolia HOM05D005277 ORTHO05D006319 2.4e-17 91.7 54 75.9
PGR042G3267 Punica granatum HOM05D005277 ORTHO05D006319 3.1e-17 91.3 58 72.4
Lalb_Chr01g0021101 Lupinus albus HOM05D005277 ORTHO05D006319 4.0e-17 90.9 53 75.5
COL.COLO4_12662 Corchorus olitorius HOM05D005277 ORTHO05D006319 5.3e-17 90.5 57 78.9
SalBow2G0266 Salvia bowleyana HOM05D005277 ORTHO05D006319 5.3e-17 90.5 48 79.2
TWI23G0263 Tripterygium wilfordii HOM05D005277 ORTHO05D006319 6.9e-17 90.1 61 72.1
HPP92_016701 Vanilla planifolia HOM05D005277 ORTHO05D006319 6.9e-17 90.1 49 79.6
AT4G00585 Arabidopsis thaliana HOM05D005277 ORTHO05D006319 9.0e-17 89.7 57 77.2
Nitab4.5_0000080g0040 Nicotiana tabacum HOM05D005277 ORTHO05D006319 9.0e-17 89.7 50 76.0
PSO782G2674 Papaver somniferum HOM05D005277 ORTHO05D006319 9.0e-17 89.7 60 71.7
HanXRQChr02g0054711 Helianthus annuus HOM05D005277 ORTHO05D006319 1.2e-16 89.4 59 72.9
Solyc03g025910.3 Solanum lycopersicum HOM05D005277 ORTHO05D006319 1.2e-16 89.4 53 73.6
Sopen03g004720 Solanum pennellii HOM05D005277 ORTHO05D006319 1.2e-16 89.4 53 73.6
PGSC0003DMG400014288 Solanum tuberosum HOM05D005277 ORTHO05D006319 1.2e-16 89.4 53 73.6
Psat3g111720 Pisum sativum HOM05D005277 ORTHO05D006319 2.0e-16 88.6 52 76.9
Aqoxy7G00369 Aquilegia oxysepala HOM05D005277 ORTHO05D006319 3.4e-16 87.8 53 75.5
CANSAT56G2015 Cannabis sativa HOM05D005277 ORTHO05D006319 3.4e-16 87.8 53 77.4
TPR.G37794 Trifolium pratense HOM05D005277 ORTHO05D006319 9.9e-16 86.3 52 75.0
vmacro06693 Vaccinium macrocarpon HOM05D005277 ORTHO05D006319 9.9e-16 86.3 53 71.7
CSS0022794 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 1.3e-15 85.9 53 71.7
ATR0763G077 Amborella trichopoda HOM05D005277 ORTHO05D006319 1.7e-15 85.5 62 64.5
ATR0721G079 Amborella trichopoda HOM05D005277 ORTHO05D006319 2.2e-15 85.1 59 66.1
Medtr7g076630 Medicago truncatula HOM05D005277 ORTHO05D006319 3.8e-15 84.3 54 72.2
Cc00_g02540 Coffea canephora HOM05D005277 ORTHO05D006319 1.4e-14 82.4 52 71.2
Ca_07884_v3 Cicer arietinum L. HOM05D005277 ORTHO05D006319 1.9e-14 82.0 49 75.5
ATR0174G019 Amborella trichopoda HOM05D005277 ORTHO05D006319 4.2e-14 80.9 63 61.9
DCAR_018191 Daucus carota HOM05D005277 ORTHO05D006319 9.3e-14 79.7 54 66.7
FAN10G1490 Fragaria x ananassa HOM05D005277 ORTHO05D006319 9.3e-14 79.7 38 92.1
CSS0038928 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 1.0e-12 76.3 70 54.3
GSVIVG01010541001 Vitis vinifera HOM05D005277 ORTHO05D006319 3.0e-12 74.7 38 84.2
Cc02_g03110 Coffea canephora HOM05D005277 ORTHO05D006319 5.6e-11 70.5 38 78.9
SMO203G0011 Selaginella moellendorffii HOM05D005277 ORTHO05D006319 6.2e-10 67.0 41 63.4
Pp3c7_13700 Physcomitrium patens HOM05D005277 ORTHO05D006319 1.4e-09 65.9 45 62.2
Mapoly0023s0078 Marchantia polymorpha HOM05D005277 ORTHO05D006319 6.9e-09 63.5 60 55.0
AagrBONN_evm.TU.Sc2ySwM_369.4 Anthoceros agrestis HOM05D005277 ORTHO05D006319 3.8e-07 57.8 57 52.6


User provided reference genes

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