Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung05325 Brassica carinata HOM05D004657 ORTHO05D005562 1.1e-181 640.2 416 100.0
BolC3t20095H Brassica oleracea HOM05D004657 ORTHO05D005562 9.4e-173 610.5 416 95.2
C03p78370 Brassica napus HOM05D004657 ORTHO05D005562 1.2e-172 610.1 416 91.6
A08p23310 Brassica napus HOM05D004657 ORTHO05D005562 5.4e-152 541.6 415 89.2
BraA08t34286Z Brassica rapa HOM05D004657 ORTHO05D005562 5.4e-152 541.6 415 89.2
C01p00860 Brassica napus HOM05D004657 ORTHO05D005562 6.6e-142 508.1 419 80.2
BcaNung00905 Brassica carinata HOM05D004657 ORTHO05D005562 4.7e-140 501.9 419 81.4
BraA01t00078Z Brassica rapa HOM05D004657 ORTHO05D005562 1.3e-137 493.8 433 76.2
A01p00750 Brassica napus HOM05D004657 ORTHO05D005562 2.9e-137 492.7 433 76.2
Sp7g36050 Schrenkiella parvula HOM05D004657 ORTHO05D005562 1.5e-133 480.3 427 78.9
BolC1t00087H Brassica oleracea HOM05D004657 ORTHO05D005562 8.1e-132 474.6 432 76.6
AL7G12070 Arabidopsis lyrata HOM05D004657 ORTHO05D005562 2.5e-125 453.0 426 77.5
Thhalv10026765m.g Eutrema salsugineum HOM05D004657 ORTHO05D005562 2.5e-125 453.0 436 75.2
Carub.0007s0176 Capsella rubella HOM05D004657 ORTHO05D005562 5.6e-125 451.8 436 76.6
AT4G39840 Arabidopsis thaliana HOM05D004657 ORTHO05D005562 7.3e-125 451.4 425 76.5
CARHR246860 Cardamine hirsuta HOM05D004657 ORTHO05D005562 4.7e-124 448.7 424 71.5
Aa31LG6G15430 Aethionema arabicum HOM05D004657 ORTHO05D005562 8.4e-121 438.0 422 69.9
THA.LOC104807698 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 2.9e-113 412.9 419 73.3
THA.LOC104824872 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 5.3e-107 392.1 402 62.4
Cpa.g.sc621.1 Carica papaya HOM05D004657 ORTHO05D005562 1.7e-105 387.1 248 80.2
PGR004G1209 Punica granatum HOM05D004657 ORTHO05D005562 8.4e-105 384.8 258 77.1
Hma1.2p1_0047F.1_g027890 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 1.2e-103 380.9 257 76.3
COL.COLO4_09954 Corchorus olitorius HOM05D004657 ORTHO05D005562 3.9e-102 375.9 256 74.2
CANSAT01G2418 Cannabis sativa HOM05D004657 ORTHO05D005562 9.6e-101 371.3 256 74.2
FAN19G1231 Fragaria x ananassa HOM05D004657 ORTHO05D005562 3.6e-100 369.4 398 65.1
Prupe.6G184700 Prunus persica HOM05D004657 ORTHO05D005562 6.2e-100 368.6 255 74.1
FAN26G2002 Fragaria x ananassa HOM05D004657 ORTHO05D005562 1.1e-99 367.9 419 62.8
Eucgr.I00428 Eucalyptus grandis HOM05D004657 ORTHO05D005562 1.4e-99 367.5 262 72.9
Thecc.01G102700 Theobroma cacao HOM05D004657 ORTHO05D005562 1.4e-99 367.5 257 72.4
MELO3C007762.2 Cucumis melo HOM05D004657 ORTHO05D005562 3.1e-99 366.3 252 73.0
Atru.chr4.84 Acer truncatum HOM05D004657 ORTHO05D005562 9.0e-99 364.8 260 71.5
Ciclev10027598m.g Citrus clementina HOM05D004657 ORTHO05D005562 9.0e-99 364.8 237 77.6
Gohir.A02G143600 Gossypium hirsutum HOM05D004657 ORTHO05D005562 9.0e-99 364.8 258 72.5
FAN28G0529 Fragaria x ananassa HOM05D004657 ORTHO05D005562 1.2e-98 364.4 417 60.9
Duzib147G0720 Durio zibethinus HOM05D004657 ORTHO05D005562 1.5e-98 364.0 258 71.3
RcHm_v2.0_Chr2g0114541 Rosa chinensis HOM05D004657 ORTHO05D005562 1.5e-98 364.0 271 69.4
Haze_24945 Corylus avellana HOM05D004657 ORTHO05D005562 5.8e-98 362.1 252 73.0
FAN23G0181 Fragaria x ananassa HOM05D004657 ORTHO05D005562 7.6e-98 361.7 417 64.0
ClCG01G018830 Citrullus lanatus HOM05D004657 ORTHO05D005562 9.9e-98 361.3 245 73.9
MD15G1325300 Malus domestica HOM05D004657 ORTHO05D005562 9.9e-98 361.3 247 74.1
Gohir.D03G036900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 1.3e-97 360.9 258 72.1
Gorai.003G038700 Gossypium raimondii HOM05D004657 ORTHO05D005562 1.3e-97 360.9 256 72.7
TAR625G0843 Trochodendron aralioides HOM05D004657 ORTHO05D005562 1.7e-97 360.5 242 75.6
CiPaw.04G098700 Carya illinoinensis HOM05D004657 ORTHO05D005562 2.2e-97 360.1 252 75.0
CsaV3_6G045490 Cucumis sativus L. HOM05D004657 ORTHO05D005562 2.9e-97 359.8 252 71.8
Sabra05G0063000 Salix brachista HOM05D004657 ORTHO05D005562 2.9e-97 359.8 245 73.5
TAR381G0611 Trochodendron aralioides HOM05D004657 ORTHO05D005562 3.8e-97 359.4 242 74.8
Potri.005G076500 Populus trichocarpa HOM05D004657 ORTHO05D005562 1.9e-96 357.1 245 72.7
Medtr3g087360 Medicago truncatula HOM05D004657 ORTHO05D005562 2.4e-96 356.7 242 75.2
Cfa002676 Carpinus fangiana HOM05D004657 ORTHO05D005562 3.2e-96 356.3 252 71.4
Cc00_g16220 Coffea canephora HOM05D004657 ORTHO05D005562 4.2e-96 355.9 258 72.9
Psat5g089640 Pisum sativum HOM05D004657 ORTHO05D005562 4.2e-96 355.9 252 72.6
Duzib264G0234 Durio zibethinus HOM05D004657 ORTHO05D005562 5.5e-96 355.5 252 71.0
Lj4g0007261 Lotus japonicus HOM05D004657 ORTHO05D005562 5.5e-96 355.5 271 72.0
QL06p049779 Quercus lobata HOM05D004657 ORTHO05D005562 5.5e-96 355.5 256 73.4
Glyma.08G136600 Glycine max HOM05D004657 ORTHO05D005562 7.1e-96 355.1 257 70.8
Sabra07G0075500 Salix brachista HOM05D004657 ORTHO05D005562 7.1e-96 355.1 252 70.6
Manes.12G135900 Manihot esculenta HOM05D004657 ORTHO05D005562 1.2e-95 354.4 258 69.4
Phvul.002G255300 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 1.2e-95 354.4 255 71.4
VMungo1383G1250 Vigna mungo HOM05D004657 ORTHO05D005562 3.5e-95 352.8 250 72.4
arahy.Tifrunner.gnm1.ann1.Q2VPH2 Arachis hypogaea HOM05D004657 ORTHO05D005562 4.6e-95 352.4 242 74.0
Hma1.2p1_0308F.1_g120150 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 6.0e-95 352.1 389 55.0
TWI53G1309 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 7.9e-95 351.7 255 70.2
Potri.007G091900 Populus trichocarpa HOM05D004657 ORTHO05D005562 1.0e-94 351.3 258 68.2
arahy.Tifrunner.gnm1.ann1.4BU7T8 Arachis hypogaea HOM05D004657 ORTHO05D005562 1.3e-94 350.9 242 73.6
Lj6g0008145 Lotus japonicus HOM05D004657 ORTHO05D005562 3.0e-94 349.7 254 70.9
TWI77G0153 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 3.0e-94 349.7 247 71.3
DCAR_014230 Daucus carota HOM05D004657 ORTHO05D005562 1.5e-93 347.4 263 68.1
Sed0024330 Sechium edule HOM05D004657 ORTHO05D005562 5.6e-93 345.5 260 71.2
PSO541G4803 Papaver somniferum HOM05D004657 ORTHO05D005562 2.1e-92 343.6 253 70.0
Glyma.11G239700 Glycine max HOM05D004657 ORTHO05D005562 2.8e-92 343.2 246 72.0
CiPaw.03G141100 Carya illinoinensis HOM05D004657 ORTHO05D005562 3.7e-92 342.8 252 69.8
Glyma.18G017700 Glycine max HOM05D004657 ORTHO05D005562 3.7e-92 342.8 246 71.5
VMungo0251G2127 Vigna mungo HOM05D004657 ORTHO05D005562 3.7e-92 342.8 255 69.8
Manes.13G075300 Manihot esculenta HOM05D004657 ORTHO05D005562 6.2e-92 342.0 260 67.3
Lsat_1_v5_gn_4_142741 Lactuca sativa HOM05D004657 ORTHO05D005562 8.1e-92 341.7 260 68.1
CSS0006663 Camellia sinensis var. sinensis HOM05D004657 ORTHO05D005562 1.4e-91 340.9 258 70.2
Lalb_Chr07g0185151 Lupinus albus HOM05D004657 ORTHO05D005562 2.4e-91 340.1 258 67.4
PSO781G0272 Papaver somniferum HOM05D004657 ORTHO05D005562 2.4e-91 340.1 262 68.3
Sc16g0005630 Simmondsia chinensis HOM05D004657 ORTHO05D005562 3.1e-91 339.7 244 69.3
Lj2P550T25 Lonicera japonica HOM05D004657 ORTHO05D005562 4.5e-90 335.9 239 72.0
Rhsim10G0161200 Rhododendron simsii HOM05D004657 ORTHO05D005562 1.7e-89 334.0 256 69.9
Gohir.D11G222100 Gossypium hirsutum HOM05D004657 ORTHO05D005562 2.2e-89 333.6 254 69.7
Peaxi162Scf00805g00021 Petunia axillaris HOM05D004657 ORTHO05D005562 2.2e-89 333.6 252 69.4
Gohir.A11G200900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 1.1e-88 331.3 293 62.8
HanXRQChr17g0543271 Helianthus annuus HOM05D004657 ORTHO05D005562 1.4e-88 330.9 418 57.4
Psat7g054320 Pisum sativum HOM05D004657 ORTHO05D005562 1.4e-88 330.9 246 70.3
Aqoxy6G00812 Aquilegia oxysepala HOM05D004657 ORTHO05D005562 2.5e-88 330.1 395 50.1
Medtr8g090265 Medicago truncatula HOM05D004657 ORTHO05D005562 3.2e-88 329.7 236 69.5
Phvul.001G251700 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 1.2e-87 327.8 246 68.3
PGSC0003DMG400001895 Solanum tuberosum HOM05D004657 ORTHO05D005562 1.2e-87 327.8 245 68.2
PGSC0003DMG400023187 Solanum tuberosum HOM05D004657 ORTHO05D005562 1.2e-87 327.8 254 66.9
Gorai.007G239400 Gossypium raimondii HOM05D004657 ORTHO05D005562 3.5e-87 326.2 254 68.9
Migut.L00115 Erythranthe guttata HOM05D004657 ORTHO05D005562 4.6e-87 325.9 263 65.0
Nitab4.5_0000004g0340 Nicotiana tabacum HOM05D004657 ORTHO05D005562 4.6e-87 325.9 258 64.7
Solyc03g078640.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 7.9e-87 325.1 256 66.4
MSTRG.3785 Avicennia marina HOM05D004657 ORTHO05D005562 5.1e-86 322.4 257 66.9
TPR.G6250 Trifolium pratense HOM05D004657 ORTHO05D005562 5.1e-86 322.4 232 69.8
Sopen03g021540 Solanum pennellii HOM05D004657 ORTHO05D005562 1.5e-85 320.9 256 65.6
Sopen04g024940 Solanum pennellii HOM05D004657 ORTHO05D005562 1.6e-84 317.4 245 66.9
DCAR_011511 Daucus carota HOM05D004657 ORTHO05D005562 2.1e-84 317.0 248 68.1
Solyc04g055090.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 6.3e-84 315.5 245 66.5
unitig_748.g8654 Utricularia gibba HOM05D004657 ORTHO05D005562 3.1e-83 313.2 238 67.2
Glyma.05G179100 Glycine max HOM05D004657 ORTHO05D005562 5.3e-83 312.4 234 68.8
CAN.G480.1 Capsicum annuum HOM05D004657 ORTHO05D005562 6.9e-83 312.0 251 65.3
Nitab4.5_0000897g0030 Nicotiana tabacum HOM05D004657 ORTHO05D005562 6.9e-83 312.0 258 62.8
MSTRG.23340 Avicennia marina HOM05D004657 ORTHO05D005562 5.9e-82 308.9 261 60.9
Lsat_1_v5_gn_5_43821 Lactuca sativa HOM05D004657 ORTHO05D005562 1.7e-81 307.4 258 62.4
unitig_32.g11813 Utricularia gibba HOM05D004657 ORTHO05D005562 3.2e-80 303.1 255 62.0
SGA_v2.0_scaffold34G13594 Striga asiatica HOM05D004657 ORTHO05D005562 6.1e-79 298.9 232 65.1
SGA_v2.0_scaffold47G17783 Striga asiatica HOM05D004657 ORTHO05D005562 7.4e-77 292.0 241 61.0
MBI02_g08733_MAGBIO Magnolia biondii HOM05D004657 ORTHO05D005562 1.3e-76 291.2 242 63.2
Lj4g0017498 Lotus japonicus HOM05D004657 ORTHO05D005562 3.7e-76 289.7 247 65.6
MSTRG.2565 Avicennia marina HOM05D004657 ORTHO05D005562 4.1e-75 286.2 251 59.4
SalBow3G2946 Salvia bowleyana HOM05D004657 ORTHO05D005562 5.9e-74 282.3 214 69.6
DCAR_001485 Daucus carota HOM05D004657 ORTHO05D005562 5.1e-70 269.2 248 58.5
unitig_88.g27724 Utricularia gibba HOM05D004657 ORTHO05D005562 6.7e-70 268.9 225 59.1
SHI11535 Sapria himalayana HOM05D004657 ORTHO05D000023 7.9e-63 245.4 242 52.1
HPP92_016347 Vanilla planifolia HOM05D004657 ORTHO05D008789 1.7e-52 211.1 259 47.1
SEGI_28024 Sequoiadendron giganteum HOM05D004657 ORTHO05D005562 2.3e-46 190.7 253 39.9
Zm00001eb001010 Zea mays HOM05D004657 ORTHO05D005562 2.0e-42 177.6 249 42.6
Actinidia36592 Actinidia chinensis HOM05D004657 ORTHO05D005562 4.5e-42 176.4 111 76.6
Os08g0411300 Oryza sativa ssp. japonica HOM05D004657 ORTHO05D005562 5.9e-42 176.0 261 41.0
ATR0564G070 Amborella trichopoda HOM05D004657 ORTHO05D005562 2.5e-40 170.6 241 42.3
Nitab4.5_0000104g0160 Nicotiana tabacum HOM05D004657 ORTHO05D005562 4.0e-38 163.3 249 39.4
TPR.G17843 Trifolium pratense HOM05D004657 ORTHO05D005562 8.8e-38 162.2 89 83.1
Mapoly0036s0106 Marchantia polymorpha HOM05D004657 ORTHO05D005562 1.5e-37 161.4 260 37.3
SMO012G0039 Selaginella moellendorffii HOM05D004657 ORTHO05D005562 5.9e-34 149.4 248 37.5
AagrBONN_evm.TU.Sc2ySwM_368.2671 Anthoceros agrestis HOM05D004657 ORTHO05D005562 2.5e-32 144.1 217 39.6
CDE12G0473 Ceratophyllum demersum HOM05D001805 ORTHO05D001734 4.7e-31 139.8 132 52.3
Pp3c24_14210 Physcomitrium patens HOM05D004657 ORTHO05D005562 3.2e-27 127.1 245 32.7
Pp3c8_17900 Physcomitrium patens HOM05D004657 ORTHO05D005562 3.5e-26 123.6 219 32.4
Zm00001eb119110 Zea mays HOM05D004657 ORTHO05D005562 1.3e-25 121.7 227 36.1
Zm00001eb272140 Zea mays HOM05D004657 ORTHO05D005562 9.5e-24 115.5 175 41.7
CBR_g45841 Chara braunii HOM05D004657 ORTHO05D005562 1.8e-22 111.3 226 30.1
CBR_g57642 Chara braunii HOM05D004657 ORTHO05D005562 4.4e-21 106.7 242 28.9
MD01G1028100 Malus domestica HOM05D004657 ORTHO05D005562 3.2e-19 100.5 90 57.8
Zm00001eb168110 Zea mays HOM05D004657 ORTHO05D005562 7.0e-19 99.4 221 33.0
Oeu054841.2 Olea europaea HOM05D004657 ORTHO05D005562 2.7e-18 97.4 74 60.8
Zm00001eb295260 Zea mays HOM05D004657 ORTHO05D005562 1.3e-12 78.6 140 38.6
Zm00001eb030060 Zea mays HOM05D004657 ORTHO05D005562 4.9e-12 76.6 105 44.8
Zm00001eb342170 Zea mays HOM05D004657 ORTHO05D005562 1.1e-11 75.5 105 41.9
Zm00001eb024090 Zea mays HOM05D004657 ORTHO05D005562 1.4e-11 75.1 108 42.6
Zm00001eb342160 Zea mays HOM05D004657 ORTHO05D005562 1.9e-11 74.7 131 36.6
Sed0008262 Sechium edule HOM05D004657 ORTHO05D005562 3.5e-10 70.5 61 60.7
Zm00001eb332070 Zea mays HOM05D004657 ORTHO05D005562 3.0e-09 67.4 54 48.1
Oeu002176.1 Olea europaea HOM05D004657 ORTHO05D005562 3.9e-09 67.0 66 43.9
Zm00001eb008600 Zea mays HOM05D004657 ORTHO05D005562 6.6e-09 66.2 212 26.9
Zm00001eb210920 Zea mays HOM05D004657 ORTHO05D005562 3.6e-07 60.5 185 31.9
CDE04G1361 Ceratophyllum demersum HOM05D001805 ORTHO05D001734 1.8e-06 58.2 74 41.9


User provided reference genes

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