Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung05255 Brassica carinata HOM05D005125 ORTHO05D006777 7.7e-146 520.4 249 100.0
BcaC04g22006 Brassica carinata HOM05D005125 ORTHO05D006777 3.2e-120 435.3 236 91.1
C09p24930 Brassica napus HOM05D005125 ORTHO05D006777 3.2e-120 435.3 236 91.1
A09p19570 Brassica napus HOM05D005125 ORTHO05D006777 6.1e-119 431.0 236 90.3
BraA09t37570Z Brassica rapa HOM05D005125 ORTHO05D006777 1.0e-118 430.3 236 90.3
BcaB07g31085 Brassica carinata HOM05D005125 ORTHO05D006777 2.5e-112 409.1 236 87.3
Sp7g08250 Schrenkiella parvula HOM05D005125 ORTHO05D006777 1.4e-99 366.7 240 79.6
Carub.0008s0686 Capsella rubella HOM05D005125 ORTHO05D006777 2.4e-99 365.9 229 82.1
AT5G42320 Arabidopsis thaliana HOM05D005125 ORTHO05D006777 5.4e-99 364.8 232 79.7
CARHR284930 Cardamine hirsuta HOM05D005125 ORTHO05D006777 9.2e-99 364.0 232 78.9
AL8G19280 Arabidopsis lyrata HOM05D005125 ORTHO05D006777 7.8e-98 360.9 232 79.3
Aa31LG9G12440 Aethionema arabicum HOM05D005125 ORTHO05D006777 6.4e-92 341.3 241 73.9
THA.LOC104813172 Tarenaya hassleriana HOM05D005125 ORTHO05D006777 9.2e-91 337.4 231 76.2
TWI56G0714 Tripterygium wilfordii HOM05D005125 ORTHO05D006777 1.8e-86 323.2 208 75.0
CiPaw.08G073000 Carya illinoinensis HOM05D005125 ORTHO05D006777 5.2e-86 321.6 234 70.1
BolC9t55384H Brassica oleracea HOM05D005125 ORTHO05D006777 7.5e-85 317.8 182 89.0
Manes.05G134400 Manihot esculenta HOM05D005125 ORTHO05D006777 9.9e-85 317.4 228 70.6
CiPaw.07G138900 Carya illinoinensis HOM05D005125 ORTHO05D006777 2.2e-84 316.2 234 67.9
Gorai.002G117000 Gossypium raimondii HOM05D005125 ORTHO05D006777 2.2e-84 316.2 208 72.6
Duzib116G0840 Durio zibethinus HOM05D005125 ORTHO05D006777 2.9e-84 315.8 208 74.0
Potri.005G250300 Populus trichocarpa HOM05D005125 ORTHO05D006777 2.9e-84 315.8 220 68.6
Gohir.D01G091900 Gossypium hirsutum HOM05D005125 ORTHO05D006777 6.4e-84 314.7 208 72.1
Sabra05G0193900 Salix brachista HOM05D005125 ORTHO05D006777 6.4e-84 314.7 225 68.4
Gohir.A01G105600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 1.1e-83 313.9 208 72.1
Potri.002G010800 Populus trichocarpa HOM05D005125 ORTHO05D006777 1.1e-83 313.9 213 70.9
Cfa014076 Carpinus fangiana HOM05D005125 ORTHO05D006777 3.2e-83 312.4 228 68.9
QL02p014036 Quercus lobata HOM05D005125 ORTHO05D006777 3.2e-83 312.4 224 69.2
Thecc.08G058900 Theobroma cacao HOM05D005125 ORTHO05D006777 3.2e-83 312.4 208 72.6
Cpa.g.sc26.198 Carica papaya HOM05D005125 ORTHO05D006777 7.1e-83 311.2 235 68.5
Duzib093G0577 Durio zibethinus HOM05D005125 ORTHO05D006777 3.5e-82 308.9 220 70.5
Ciclev10003241m.g Citrus clementina HOM05D005125 ORTHO05D006777 6.0e-82 308.1 205 73.7
GSVIVG01013360001 Vitis vinifera HOM05D005125 ORTHO05D006777 6.0e-82 308.1 208 71.6
Glyma.06G018200 Glycine max HOM05D005125 ORTHO05D006777 1.0e-81 307.4 231 66.2
Atru.chr13.135 Acer truncatum HOM05D005125 ORTHO05D006777 1.5e-80 303.5 230 67.0
Glyma.04G017900 Glycine max HOM05D005125 ORTHO05D006777 1.5e-80 303.5 225 67.6
Cc10_g00670 Coffea canephora HOM05D005125 ORTHO05D006777 5.6e-80 301.6 231 65.8
Eucgr.E03516 Eucalyptus grandis HOM05D005125 ORTHO05D006777 9.5e-80 300.8 243 62.6
Manes.18G005400 Manihot esculenta HOM05D005125 ORTHO05D006777 1.2e-79 300.4 239 64.0
Medtr3g115290 Medicago truncatula HOM05D005125 ORTHO05D006777 1.6e-79 300.1 231 64.5
Rhsim06G0007400 Rhododendron simsii HOM05D005125 ORTHO05D006777 2.1e-79 299.7 229 65.1
Haze_22773 Corylus avellana HOM05D005125 ORTHO05D006777 2.8e-79 299.3 214 70.6
FAN27G2626 Fragaria x ananassa HOM05D005125 ORTHO05D006777 2.8e-79 299.3 233 63.5
Eucgr.L00923 Eucalyptus grandis HOM05D005125 ORTHO05D006777 4.7e-79 298.5 244 62.3
FAN15G0126 Fragaria x ananassa HOM05D005125 ORTHO05D006777 4.7e-79 298.5 233 63.5
Prupe.1G354500 Prunus persica HOM05D005125 ORTHO05D006777 6.2e-79 298.1 233 65.2
Dinv05534 Davidia involucrata HOM05D005125 ORTHO05D006777 8.1e-79 297.7 208 70.7
Psat5g159120 Pisum sativum HOM05D005125 ORTHO05D006777 8.1e-79 297.7 208 69.2
Duzib041G0467 Durio zibethinus HOM05D005125 ORTHO05D006777 1.1e-78 297.4 208 69.7
FvH4_2g37450 Fragaria vesca HOM05D005125 ORTHO05D006777 1.1e-78 297.4 233 62.7
Actinidia37922 Actinidia chinensis HOM05D005125 ORTHO05D006777 1.4e-78 297.0 232 64.7
MD15G1002000 Malus domestica HOM05D005125 ORTHO05D006777 1.4e-78 297.0 233 64.8
Lalb_Chr11g0061631 Lupinus albus HOM05D005125 ORTHO05D006777 2.4e-78 296.2 205 71.2
EL10Ac1g01960 Beta vulgaris HOM05D005125 ORTHO05D006777 3.1e-78 295.8 219 68.5
ClCG08G009440 Citrullus lanatus HOM05D005125 ORTHO05D006777 4.0e-78 295.4 214 67.8
MD08G1002400 Malus domestica HOM05D005125 ORTHO05D006777 8.9e-78 294.3 234 64.1
CSS0022218 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 1.2e-77 293.9 234 64.5
Ca_15433_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 2.0e-77 293.1 222 65.3
FAN20G1306 Fragaria x ananassa HOM05D005125 ORTHO05D006777 2.0e-77 293.1 233 62.7
Lalb_Chr23g0265791 Lupinus albus HOM05D005125 ORTHO05D006777 2.0e-77 293.1 211 69.2
Migut.C00961 Erythranthe guttata HOM05D005125 ORTHO05D006777 2.6e-77 292.7 208 67.8
Peaxi162Scf00893g00037 Petunia axillaris HOM05D005125 ORTHO05D006777 3.4e-77 292.4 211 68.7
RcHm_v2.0_Chr6g0304271 Rosa chinensis HOM05D005125 ORTHO05D006777 4.4e-77 292.0 233 63.1
arahy.Tifrunner.gnm1.ann1.VXG7Z6 Arachis hypogaea HOM05D005125 ORTHO05D006777 5.8e-77 291.6 232 62.9
arahy.Tifrunner.gnm1.ann1.1X7ZBM Arachis hypogaea HOM05D005125 ORTHO05D006777 7.6e-77 291.2 232 62.9
Lj1g0005535 Lotus japonicus HOM05D005125 ORTHO05D006777 7.6e-77 291.2 205 68.3
Phvul.009G010800 Phaseolus vulgaris HOM05D005125 ORTHO05D006777 4.9e-76 288.5 233 63.1
Nitab4.5_0000588g0110 Nicotiana tabacum HOM05D005125 ORTHO05D006777 8.4e-76 287.7 237 61.6
EL10Ac7g16836 Beta vulgaris HOM05D005125 ORTHO05D006777 1.1e-75 287.3 227 65.6
CANSAT25G1708 Cannabis sativa HOM05D005125 ORTHO05D006777 1.4e-75 287.0 223 64.6
Dinv31939 Davidia involucrata HOM05D005125 ORTHO05D006777 1.9e-75 286.6 208 69.7
Hma1.2p1_0507F.1_g168460 Hydrangea macrophylla HOM05D005125 ORTHO05D006777 1.9e-75 286.6 232 64.7
PSO675G8084 Papaver somniferum HOM05D005125 ORTHO05D006777 3.2e-75 285.8 226 65.0
Hund05112 Selenicereus undatus HOM05D005125 ORTHO05D006777 3.2e-75 285.8 230 63.5
Solyc04g082340.3 Solanum lycopersicum HOM05D005125 ORTHO05D006777 3.2e-75 285.8 208 66.8
Sopen04g035960 Solanum pennellii HOM05D005125 ORTHO05D006777 3.2e-75 285.8 208 66.8
TPR.G38202 Trifolium pratense HOM05D005125 ORTHO05D006777 3.2e-75 285.8 227 61.7
PSO541G3228 Papaver somniferum HOM05D005125 ORTHO05D006777 4.1e-75 285.4 226 65.0
PGSC0003DMG400009979 Solanum tuberosum HOM05D005125 ORTHO05D006777 4.1e-75 285.4 204 67.6
MELO3C026539.2 Cucumis melo HOM05D005125 ORTHO05D006777 5.4e-75 285.0 221 64.3
Ah.00g000800 Amaranthus hybridus HOM05D005125 ORTHO05D006777 7.1e-75 284.6 234 63.2
Lj4A11T69 Lonicera japonica HOM05D005125 ORTHO05D006777 7.1e-75 284.6 211 66.4
Nn5g30942 Nelumbo nucifera HOM05D005125 ORTHO05D006777 9.2e-75 284.3 205 67.8
Sc15g0004430 Simmondsia chinensis HOM05D005125 ORTHO05D006777 1.2e-74 283.9 208 66.8
HanXRQChr06g0183991 Helianthus annuus HOM05D005125 ORTHO05D006777 2.7e-74 282.7 206 66.0
TAR625G0173 Trochodendron aralioides HOM05D005125 ORTHO05D006777 2.7e-74 282.7 222 64.9
VMungo1309G1587 Vigna mungo HOM05D005125 ORTHO05D006777 4.6e-74 282.0 234 63.2
AUR62036871 Chenopodium quinoa HOM05D005125 ORTHO05D006777 7.8e-74 281.2 197 70.1
PGR083G1107 Punica granatum HOM05D005125 ORTHO05D006777 1.0e-73 280.8 204 68.1
CsaV3_6G031580 Cucumis sativus L. HOM05D005125 ORTHO05D006777 2.3e-73 279.6 231 62.8
unitig_747.g21516 Utricularia gibba HOM05D005125 ORTHO05D006777 3.0e-73 279.3 235 58.7
Lsat_1_v5_gn_2_5181 Lactuca sativa HOM05D005125 ORTHO05D006777 3.9e-73 278.9 231 60.2
SalBow7G1095 Salvia bowleyana HOM05D005125 ORTHO05D006777 1.1e-72 277.3 218 62.8
Aqoxy6G01728 Aquilegia oxysepala HOM05D005125 ORTHO05D006777 4.3e-72 275.4 222 64.0
vmacro21811 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 1.2e-71 273.9 247 58.7
Gorai.009G188100 Gossypium raimondii HOM05D005125 ORTHO05D006777 2.1e-71 273.1 208 63.9
ECA238G0848 Erigeron canadensis HOM05D005125 ORTHO05D006777 2.8e-71 272.7 192 68.2
Sed0024407 Sechium edule HOM05D005125 ORTHO05D006777 2.4e-70 269.6 220 62.3
Gohir.D05G182800 Gossypium hirsutum HOM05D005125 ORTHO05D006777 5.2e-70 268.5 208 62.5
CAN.G311.115 Capsicum annuum HOM05D005125 ORTHO05D006777 1.5e-69 266.9 191 68.6
Ca_15458_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 2.0e-69 266.5 189 68.3
MD12G1003300 Malus domestica HOM05D005125 ORTHO05D006777 2.0e-69 266.5 243 58.4
Lsat_1_v5_gn_8_26201 Lactuca sativa HOM05D005125 ORTHO05D006777 2.6e-69 266.2 227 59.5
Gohir.A05G179600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 2.9e-68 262.7 208 61.5
Rhsim07G0254900 Rhododendron simsii HOM05D005125 ORTHO05D006777 4.9e-68 261.9 193 65.8
SGA_v2.0_scaffold108G30863 Striga asiatica HOM05D005125 ORTHO05D006777 8.4e-68 261.2 265 55.1
Actinidia28601 Actinidia chinensis HOM05D005125 ORTHO05D006777 4.6e-66 255.4 224 58.0
vmacro04403 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 3.0e-65 252.7 207 61.4
CDE05G1644 Ceratophyllum demersum HOM05D005125 ORTHO05D006777 3.3e-64 249.2 231 55.4
HPP92_007117 Vanilla planifolia HOM05D005125 ORTHO05D006777 9.6e-64 247.7 229 55.0
ATR0661G305 Amborella trichopoda HOM05D005125 ORTHO05D006777 2.1e-63 246.5 209 56.9
Os02g0119300 Oryza sativa ssp. japonica HOM05D005125 ORTHO05D006777 3.1e-62 242.7 210 55.7
SHI07997 Sapria himalayana HOM05D005125 ORTHO05D006777 3.1e-62 242.7 222 59.9
Zm00001eb209310 Zea mays HOM05D005125 ORTHO05D006777 4.0e-62 242.3 231 54.5
DCAR_016769 Daucus carota HOM05D005125 ORTHO05D006777 9.9e-61 237.7 237 54.4
SEGI_03459 Sequoiadendron giganteum HOM05D005125 ORTHO05D006777 7.1e-59 231.5 213 52.6
MBI08_g41521_MAGBIO Magnolia biondii HOM05D005125 ORTHO05D006777 1.2e-58 230.7 217 54.8
Thhalv10027780m.g Eutrema salsugineum HOM05D005125 ORTHO05D006777 4.8e-55 218.8 150 75.3
Mapoly0045s0063 Marchantia polymorpha HOM05D005125 ORTHO05D006777 1.8e-54 216.9 205 51.2
AagrBONN_evm.TU.Sc2ySwM_362.2863 Anthoceros agrestis HOM05D005125 ORTHO05D006777 2.6e-53 213.0 223 51.6
Oeu056206.2 Olea europaea HOM05D005125 ORTHO05D006777 3.5e-50 202.6 165 62.4
Pp3c20_16570 Physcomitrium patens HOM05D005125 ORTHO05D006777 7.4e-48 194.9 208 46.6
SMO358G0159 Selaginella moellendorffii HOM05D005125 ORTHO05D006777 8.2e-47 191.4 194 51.0
Cre11.g467631 Chlamydomonas reinhardtii HOM05D005125 ORTHO05D006777 4.8e-39 165.6 207 39.6
CSS0019336 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 1.0e-36 157.9 79 86.1
ECA238G3411 Erigeron canadensis HOM05D005125 ORTHO05D006777 1.4e-35 154.1 79 82.3
PRCOL_00006814 Prasinoderma coloniale HOM05D005125 ORTHO05D006777 1.8e-33 147.1 150 52.0
SGA_v2.0_scaffold83G26467 Striga asiatica HOM05D005125 ORTHO05D006777 7.7e-29 131.7 156 51.3
COL.COLO4_06662 Corchorus olitorius HOM05D005125 ORTHO05D006777 6.5e-28 128.6 75 78.7
Cc00_g07920 Coffea canephora HOM05D005125 ORTHO05D006777 7.4e-24 115.2 160 45.6
Cc10_g14360 Coffea canephora HOM05D005125 ORTHO05D006777 2.0e-16 90.5 58 70.7
Cre16.g668950 Chlamydomonas reinhardtii HOM05D005125 ORTHO05D034490 5.0e-12 75.9 201 29.4
ECA233G5321 Erigeron canadensis HOM05D000003 ORTHO05D000004 4.7e-10 69.3 54 59.3
PRCOL_00005708 Prasinoderma coloniale HOM05D005125 ORTHO05D034490 5.2e-09 65.9 227 25.6
Lsat_1_v5_gn_1_87521 Lactuca sativa HOM05D005125 ORTHO05D007904 1.7e-07 60.8 36 66.7


User provided reference genes

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