Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung05131 Brassica carinata HOM05D005746 ORTHO05D007105 0.0e+00 1644.8 811 100.0
C07p37790 Brassica napus HOM05D005746 ORTHO05D007105 0.0e+00 1509.6 812 92.9
BolC7t44300H Brassica oleracea HOM05D005746 ORTHO05D007105 0.0e+00 1509.6 812 92.9
A06p40280 Brassica napus HOM05D005746 ORTHO05D007105 0.0e+00 1502.6 812 92.6
BraA06t26946Z Brassica rapa HOM05D005746 ORTHO05D007105 0.0e+00 1502.6 812 92.6
Sp2g17500 Schrenkiella parvula HOM05D005746 ORTHO05D007105 0.0e+00 1482.6 812 89.4
AT3G55160 Arabidopsis thaliana HOM05D005746 ORTHO05D007105 0.0e+00 1429.8 811 86.1
AL5G36280 Arabidopsis lyrata HOM05D005746 ORTHO05D007105 0.0e+00 1423.7 811 85.9
CARHR165190 Cardamine hirsuta HOM05D005746 ORTHO05D007105 0.0e+00 1413.7 811 84.8
Thhalv10003503m.g Eutrema salsugineum HOM05D005746 ORTHO05D007105 0.0e+00 1401.0 813 84.1
BcaC06g33649 Brassica carinata HOM05D005746 ORTHO05D007105 0.0e+00 1348.2 812 85.3
Aa31LG2G4330 Aethionema arabicum HOM05D005746 ORTHO05D007105 0.0e+00 1325.1 822 81.0
THA.LOC104823176 Tarenaya hassleriana HOM05D005746 ORTHO05D007105 0.0e+00 1115.9 828 68.2
Carub.0005s2180 Capsella rubella HOM05D005746 ORTHO05D007105 0.0e+00 1113.6 651 84.0
BcaC06g33650 Brassica carinata HOM05D005746 ORTHO05D007105 8.2e-290 1000.3 812 67.9
Thecc.04G080100 Theobroma cacao HOM05D005746 ORTHO05D007105 8.6e-263 910.6 871 55.7
Duzib147G0034 Durio zibethinus HOM05D005746 ORTHO05D007105 3.4e-259 898.7 873 55.4
Ciclev10010889m.g Citrus clementina HOM05D005746 ORTHO05D007105 1.1e-254 883.6 870 54.9
Gohir.A09G017100 Gossypium hirsutum HOM05D005746 ORTHO05D007105 4.3e-254 881.7 871 54.9
Haze_14549 Corylus avellana HOM05D005746 ORTHO05D007105 2.1e-253 879.4 858 55.8
Atru.chr8.140 Acer truncatum HOM05D005746 ORTHO05D007105 8.0e-253 877.5 871 55.7
Manes.15G175000 Manihot esculenta HOM05D005746 ORTHO05D007105 1.8e-252 876.3 861 55.5
Gorai.006G018000 Gossypium raimondii HOM05D005746 ORTHO05D007105 2.3e-252 875.9 872 54.4
CiPaw.03G027900 Carya illinoinensis HOM05D005746 ORTHO05D007105 9.8e-251 870.5 873 55.2
Cfa007537 Carpinus fangiana HOM05D005746 ORTHO05D007105 1.3e-250 870.2 869 55.6
QL02p081653 Quercus lobata HOM05D005746 ORTHO05D007105 1.9e-249 866.3 875 54.1
COL.COLO4_33291 Corchorus olitorius HOM05D005746 ORTHO05D007105 2.4e-249 865.9 873 53.7
TWI34G0228 Tripterygium wilfordii HOM05D005746 ORTHO05D007105 3.2e-249 865.5 881 53.5
MD09G1049900 Malus domestica HOM05D005746 ORTHO05D007105 9.5e-246 854.0 868 53.5
Dinv33748 Davidia involucrata HOM05D005746 ORTHO05D007105 6.8e-244 847.8 878 53.4
Potri.004G128601 Populus trichocarpa HOM05D005746 ORTHO05D007105 8.3e-242 840.9 880 53.3
RcHm_v2.0_Chr2g0168711 Rosa chinensis HOM05D005746 ORTHO05D007105 1.6e-240 836.6 866 52.7
FAN02G0556 Fragaria x ananassa HOM05D005746 ORTHO05D007105 2.1e-240 836.3 866 52.5
Prupe.3G268800 Prunus persica HOM05D005746 ORTHO05D007105 2.7e-240 835.9 874 52.3
FvH4_6g48870 Fragaria vesca HOM05D005746 ORTHO05D007105 1.0e-239 833.9 865 52.5
MD17G1050300 Malus domestica HOM05D005746 ORTHO05D007105 3.9e-239 832.0 868 52.4
Actinidia06086 Actinidia chinensis HOM05D005746 ORTHO05D007105 4.3e-238 828.6 873 52.0
CSS0043134 Camellia sinensis var. sinensis HOM05D005746 ORTHO05D007105 1.6e-237 826.6 880 51.9
TAR374G0083 Trochodendron aralioides HOM05D005746 ORTHO05D007105 3.6e-237 825.5 876 51.9
Phvul.004G028000 Phaseolus vulgaris HOM05D005746 ORTHO05D007105 8.1e-237 824.3 863 50.5
VMungo0464G0495 Vigna mungo HOM05D005746 ORTHO05D007105 1.4e-236 823.5 865 51.0
FAN09G1953 Fragaria x ananassa HOM05D005746 ORTHO05D007105 4.0e-236 822.0 893 51.0
Sabra04G0090500 Salix brachista HOM05D005746 ORTHO05D007105 5.2e-236 821.6 875 52.5
PGR083G2853 Punica granatum HOM05D005746 ORTHO05D007105 6.8e-236 821.2 838 51.8
Glyma.19G021700 Glycine max HOM05D005746 ORTHO05D007105 4.4e-235 818.5 858 50.6
GSVIVG01011388001 Vitis vinifera HOM05D005746 ORTHO05D007105 1.3e-234 817.0 845 53.3
vmacro05704 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 2.9e-234 815.8 864 51.5
ClCG10G014980 Citrullus lanatus HOM05D005746 ORTHO05D007105 8.4e-234 814.3 860 51.3
vmacro17103 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 1.1e-233 813.9 864 51.4
Lj2g0006836 Lotus japonicus HOM05D005746 ORTHO05D007105 1.4e-233 813.5 869 50.3
vmacro05746 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 1.4e-233 813.5 864 51.2
Lalb_Chr06g0175391 Lupinus albus HOM05D005746 ORTHO05D007105 7.1e-233 811.2 862 49.8
Eucgr.J01361 Eucalyptus grandis HOM05D005746 ORTHO05D007105 1.6e-232 810.1 875 50.4
arahy.Tifrunner.gnm1.ann1.IK9RDG Arachis hypogaea HOM05D005746 ORTHO05D007105 5.1e-231 805.1 869 50.1
ECA246G0262 Erigeron canadensis HOM05D005746 ORTHO05D007105 6.6e-231 804.7 835 51.4
Lju41C18T12 Lonicera japonica HOM05D005746 ORTHO05D007105 7.3e-230 801.2 819 52.7
Rhsim10G0040100 Rhododendron simsii HOM05D005746 ORTHO05D007105 2.1e-229 799.7 865 51.1
arahy.Tifrunner.gnm1.ann1.C4FZ3V Arachis hypogaea HOM05D005746 ORTHO05D007105 4.7e-229 798.5 869 49.6
TPR.G10375 Trifolium pratense HOM05D005746 ORTHO05D007105 4.7e-229 798.5 857 50.2
CsaV3_3G041530 Cucumis sativus L. HOM05D005746 ORTHO05D007105 3.1e-228 795.8 864 50.0
Medtr6g011760 Medicago truncatula HOM05D005746 ORTHO05D007105 6.9e-228 794.7 858 50.6
Hund15611 Selenicereus undatus HOM05D005746 ORTHO05D007105 9.0e-228 794.3 864 49.1
Ca_04277_v3 Cicer arietinum L. HOM05D005746 ORTHO05D007105 1.2e-227 793.9 863 49.9
MELO3C009878.2 Cucumis melo HOM05D005746 ORTHO05D007105 1.2e-227 793.9 864 49.7
HanXRQChr14g0439111 Helianthus annuus HOM05D005746 ORTHO05D007105 1.2e-227 793.9 839 51.7
Peaxi162Scf00451g00821 Petunia axillaris HOM05D005746 ORTHO05D007105 2.2e-226 789.6 869 49.0
Psat1g074560 Pisum sativum HOM05D005746 ORTHO05D007105 2.2e-226 789.6 858 50.5
Sed0005323 Sechium edule HOM05D005746 ORTHO05D007105 1.1e-225 787.3 855 49.5
CSS0009890 Camellia sinensis var. sinensis HOM05D005746 ORTHO05D007105 3.2e-225 785.8 880 50.0
Sc14g0005950 Simmondsia chinensis HOM05D005746 ORTHO05D007105 3.2e-225 785.8 874 49.1
Gohir.D09G015800 Gossypium hirsutum HOM05D005746 ORTHO05D007105 4.2e-225 785.4 775 55.1
Nn4g23132 Nelumbo nucifera HOM05D005746 ORTHO05D007105 7.8e-224 781.2 848 49.9
AUR62034394 Chenopodium quinoa HOM05D005746 ORTHO05D007105 3.9e-223 778.9 859 49.9
DCAR_021658 Daucus carota HOM05D005746 ORTHO05D007105 3.3e-222 775.8 872 48.2
Solyc03g062650.3 Solanum lycopersicum HOM05D005746 ORTHO05D007105 3.3e-222 775.8 862 48.6
Sopen03g014980 Solanum pennellii HOM05D005746 ORTHO05D007105 7.3e-222 774.6 859 48.8
Cc07_g03290 Coffea canephora HOM05D005746 ORTHO05D007105 2.6e-219 766.1 875 49.5
EL10Ac2g02971 Beta vulgaris HOM05D005746 ORTHO05D007105 3.4e-219 765.8 843 49.0
CAN.G1205.1 Capsicum annuum HOM05D005746 ORTHO05D007105 3.4e-219 765.8 867 47.8
Nitab4.5_0002923g0020 Nicotiana tabacum HOM05D005746 ORTHO05D007105 5.8e-219 765.0 869 48.2
AUR62039819 Chenopodium quinoa HOM05D005746 ORTHO05D007105 9.3e-217 757.7 857 48.7
Aqoxy3G00678 Aquilegia oxysepala HOM05D005746 ORTHO05D007105 1.6e-216 756.9 877 48.6
vmacro22549 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 1.3e-215 753.8 797 51.4
MSTRG.3234 Avicennia marina HOM05D005746 ORTHO05D007105 3.0e-215 752.7 870 47.2
Oeu060938.1 Olea europaea HOM05D005746 ORTHO05D007105 1.5e-214 750.4 897 46.2
PSO017G1620 Papaver somniferum HOM05D005746 ORTHO05D007105 2.2e-210 736.5 871 48.0
Lsat_1_v5_gn_3_100801 Lactuca sativa HOM05D005746 ORTHO05D007105 3.8e-210 735.7 832 50.2
vmacro05484 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 1.9e-209 733.4 864 48.0
Migut.H00912 Erythranthe guttata HOM05D005746 ORTHO05D007105 3.2e-209 732.6 859 46.3
SGA_v2.0_scaffold1G00328 Striga asiatica HOM05D005746 ORTHO05D007105 7.1e-209 731.5 840 47.0
MBI05_g35450_MAGBIO Magnolia biondii HOM05D005746 ORTHO05D007105 3.3e-198 696.0 891 46.7
unitig_0.g531 Utricularia gibba HOM05D005746 ORTHO05D007105 4.8e-189 665.6 866 44.2
ATR0564G261 Amborella trichopoda HOM05D005746 ORTHO05D007105 7.7e-187 658.3 894 43.2
Os08g0169700 Oryza sativa ssp. japonica HOM05D005746 ORTHO05D007105 1.0e-178 631.3 882 42.9
HPP92_011243 Vanilla planifolia HOM05D005746 ORTHO05D007105 3.1e-172 609.8 843 42.8
Zm00001eb414960 Zea mays HOM05D005746 ORTHO05D007105 6.5e-170 602.1 885 41.2
SEGI_38380 Sequoiadendron giganteum HOM05D005746 ORTHO05D007105 1.1e-153 548.1 928 36.4
CDE09G0909 Ceratophyllum demersum HOM05D005746 ORTHO05D007105 8.6e-138 495.4 857 37.6
Mapoly0207s0007 Marchantia polymorpha HOM05D005746 ORTHO05D007105 7.0e-132 475.7 909 36.0
Pp3c6_28730 Physcomitrium patens HOM05D005746 ORTHO05D007105 4.3e-121 439.9 872 34.5
Cpa.g.sc14.9 Carica papaya HOM05D005746 ORTHO05D007105 6.2e-120 436.0 446 51.8
SMO367G0809 Selaginella moellendorffii HOM05D005746 ORTHO05D007105 4.6e-115 419.9 827 34.1
AagrBONN_evm.TU.Sc2ySwM_369.379 Anthoceros agrestis HOM05D005746 ORTHO05D007105 1.1e-108 398.7 959 31.9
CBR_g50021 Chara braunii HOM05D005746 ORTHO05D007105 3.1e-87 327.4 888 28.9
Migut.L00530 Erythranthe guttata HOM05D005746 ORTHO05D007105 9.4e-60 236.1 712 28.8
MCO11G207 Micromonas commoda HOM05D005746 ORTHO05D007105 7.5e-41 173.3 901 24.1
CARHR159400 Cardamine hirsuta HOM05D005746 ORTHO05D007105 8.6e-29 133.3 113 62.8
VMungo1127G1975 Vigna mungo HOM05D005746 ORTHO05D007105 4.6e-22 110.9 99 60.6
Cpa.g.sc14.10 Carica papaya HOM05D005746 ORTHO05D007105 5.2e-18 97.4 55 81.8
Cre15.g642050 Chlamydomonas reinhardtii HOM05D005746 ORTHO05D007105 3.4e-17 94.7 218 30.3


User provided reference genes

Program Settings