Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung05051 Brassica carinata HOM05D004095 ORTHO05D003197 2.6e-155 552.4 353 100.0
C07p61450 Brassica napus HOM05D004095 ORTHO05D003197 1.7e-138 496.5 353 92.9
BolC7t46570H Brassica oleracea HOM05D004095 ORTHO05D003197 1.7e-135 486.5 365 90.1
BraA03t15466Z Brassica rapa HOM05D004095 ORTHO05D003197 1.4e-129 466.8 368 76.6
A03p63990 Brassica napus HOM05D004095 ORTHO05D003197 7.8e-128 461.1 365 77.3
CARHR244340 Cardamine hirsuta HOM05D004095 ORTHO05D003197 3.6e-88 329.3 369 60.4
Sp7g33720 Schrenkiella parvula HOM05D004095 ORTHO05D003197 1.4e-79 300.8 381 57.0
AL7G15100 Arabidopsis lyrata HOM05D004095 ORTHO05D003197 1.8e-79 300.4 368 61.7
AT4G35940 Arabidopsis thaliana HOM05D004095 ORTHO05D003197 1.5e-78 297.4 392 59.4
Carub.0007s0428 Capsella rubella HOM05D004095 ORTHO05D003197 2.8e-77 293.1 377 57.6
C01p03060 Brassica napus HOM05D004095 ORTHO05D003197 3.7e-77 292.7 367 59.9
Thhalv10027062m.g Eutrema salsugineum HOM05D004095 ORTHO05D003197 6.5e-74 282.0 310 58.7
BcaNung00778 Brassica carinata HOM05D004095 ORTHO05D003197 6.7e-71 271.9 365 58.9
BolC1t00292H Brassica oleracea HOM05D004095 ORTHO05D003197 4.8e-69 265.8 362 56.4
BraA01t00262Z Brassica rapa HOM05D004095 ORTHO05D003197 1.1e-65 254.6 365 55.6
A01p02760 Brassica napus HOM05D004095 ORTHO05D003197 5.2e-63 245.7 363 57.0
Aa31LG6G12890 Aethionema arabicum HOM05D004095 ORTHO05D003197 5.5e-49 199.1 383 46.5
THA.LOC104804274 Tarenaya hassleriana HOM05D004095 ORTHO05D003197 1.3e-45 188.0 382 43.5
THA.LOC104807504 Tarenaya hassleriana HOM05D004095 ORTHO05D003197 5.7e-38 162.5 382 39.5
Thhalv10022767m.g Eutrema salsugineum HOM05D004095 ORTHO05D003197 7.5e-38 162.2 375 39.7
Duzib264G0091 Durio zibethinus HOM05D004095 ORTHO05D003197 1.9e-33 147.5 366 37.2
AT2G17787 Arabidopsis thaliana HOM05D004095 ORTHO05D003197 9.5e-33 145.2 389 35.2
BcaB07g31703 Brassica carinata HOM05D004095 ORTHO05D003197 3.6e-32 143.3 362 36.7
CARHR108180 Cardamine hirsuta HOM05D004095 ORTHO05D003197 8.0e-32 142.1 356 37.6
Gorai.003G007900 Gossypium raimondii HOM05D004095 ORTHO05D003197 1.8e-31 141.0 364 36.8
COL.COLO4_22466 Corchorus olitorius HOM05D004095 ORTHO05D003197 3.1e-31 140.2 366 33.3
Duzib147G0922 Durio zibethinus HOM05D004095 ORTHO05D003197 3.1e-31 140.2 364 36.8
Carub.0003s3193 Capsella rubella HOM05D004095 ORTHO05D003197 2.9e-29 133.7 390 32.8
Cfa007004 Carpinus fangiana HOM05D004095 ORTHO05D003197 8.3e-29 132.1 370 38.1
BcaC06g36322 Brassica carinata HOM05D004095 ORTHO05D003197 1.1e-28 131.7 361 33.5
A09p11580 Brassica napus HOM05D004095 ORTHO05D003197 1.9e-28 131.0 373 31.6
BraA07t28113Z Brassica rapa HOM05D004095 ORTHO05D003197 2.4e-28 130.6 367 32.4
BraA09t36805Z Brassica rapa HOM05D004095 ORTHO05D003197 2.4e-28 130.6 367 35.7
A07p03170 Brassica napus HOM05D004095 ORTHO05D003197 4.1e-28 129.8 369 32.2
Gohir.D03G007700 Gossypium hirsutum HOM05D004095 ORTHO05D003197 4.1e-28 129.8 364 36.3
C07p05400 Brassica napus HOM05D004095 ORTHO05D003197 1.0e-26 125.2 365 30.4
C09p13630 Brassica napus HOM05D004095 ORTHO05D003197 5.0e-26 122.9 360 36.4
BolC7t40940H Brassica oleracea HOM05D004095 ORTHO05D003197 6.6e-26 122.5 365 30.1
Gohir.A02G172400 Gossypium hirsutum HOM05D004095 ORTHO05D003197 6.6e-26 122.5 364 35.7
Duzib187G0006 Durio zibethinus HOM05D004095 ORTHO05D003197 1.1e-25 121.7 367 35.4
Atru.chr3.863_Atru.chr3.864 Acer truncatum HOM05D004095 ORTHO05D003197 1.4e-23 114.8 404 33.7
AL3G50810 Arabidopsis lyrata HOM05D004095 ORTHO05D003197 4.0e-23 113.2 391 31.7
BcaC04g22942 Brassica carinata HOM05D004095 ORTHO05D003197 4.4e-22 109.8 361 31.9
TAR376G0784 Trochodendron aralioides HOM05D004095 ORTHO05D003197 4.1e-20 103.2 372 39.5
Eucgr.I02328 Eucalyptus grandis HOM05D004095 ORTHO05D003197 4.7e-16 89.7 364 32.7
Prupe.7G171900 Prunus persica HOM05D004095 ORTHO05D003197 2.0e-14 84.3 204 41.7
PSO675G0587 Papaver somniferum HOM05D004095 ORTHO05D003197 1.3e-13 81.6 369 32.2
FAN19G1292 Fragaria x ananassa HOM05D024588 ORTHO05D003197 1.4e-12 78.2 224 39.7
Haze_03728 Corylus avellana HOM05D004095 ORTHO05D003197 4.1e-12 76.6 463 34.6
PSO541G2818 Papaver somniferum HOM05D004095 ORTHO05D003197 9.2e-12 75.5 383 30.8
TAR381G0731 Trochodendron aralioides HOM05D004095 ORTHO05D003197 9.2e-12 75.5 369 27.6
Oeu061977.1 Olea europaea HOM05D004095 ORTHO05D003197 1.2e-11 75.1 388 31.4
Nn6g31993 Nelumbo nucifera HOM05D004095 ORTHO05D003197 1.6e-11 74.7 374 30.7
Gorai.008G131100 Gossypium raimondii HOM05D004095 ORTHO05D003197 2.7e-11 73.9 302 28.8
Ciclev10025767m.g Citrus clementina HOM05D004095 ORTHO05D003197 3.5e-11 73.6 335 32.2
Gorai.008G208400 Gossypium raimondii HOM05D004095 ORTHO05D003197 3.5e-11 73.6 176 29.0
PGR119G1825 Punica granatum HOM05D004095 ORTHO05D003197 4.6e-11 73.2 236 38.6
CSS0032179 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 1.3e-10 71.6 366 31.1
CAN.G311.49 Capsicum annuum HOM05D004095 ORTHO05D003197 1.3e-10 71.6 359 30.9
RcHm_v2.0_Chr2g0098961 Rosa chinensis HOM05D024588 ORTHO05D003197 1.3e-10 71.6 190 42.1
Solyc04g081730.3 Solanum lycopersicum HOM05D004095 ORTHO05D003197 1.3e-10 71.6 358 31.0
Sopen04g035350 Solanum pennellii HOM05D004095 ORTHO05D003197 1.3e-10 71.6 356 30.3
Migut.C00862 Erythranthe guttata HOM05D004095 ORTHO05D003197 3.0e-10 70.5 383 31.1
PGSC0003DMG400009946 Solanum tuberosum HOM05D004095 ORTHO05D003197 3.0e-10 70.5 355 29.9
CSS0006390 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 3.9e-10 70.1 366 30.6
Gohir.D12G193466 Gossypium hirsutum HOM05D004095 ORTHO05D003197 3.9e-10 70.1 228 25.4
GSVIVG01018727001 Vitis vinifera HOM05D004095 ORTHO05D003197 3.9e-10 70.1 205 43.9
Dinv31870 Davidia involucrata HOM05D004095 ORTHO05D003197 2.5e-09 67.4 375 31.2
Cc10_g01420 Coffea canephora HOM05D004095 ORTHO05D003197 5.6e-09 66.2 373 30.0
Aqoxy5G01820 Aquilegia oxysepala HOM05D004095 ORTHO05D003197 1.2e-08 65.1 379 31.9
TAR628G1526 Trochodendron aralioides HOM05D004095 ORTHO05D003197 2.8e-08 63.9 411 31.9
Peaxi162Scf00860g00422 Petunia axillaris HOM05D004095 ORTHO05D003197 3.6e-08 63.5 358 30.2
SGA_v2.0_scaffold19G08554 Striga asiatica HOM05D004095 ORTHO05D003197 1.1e-07 62.0 364 30.2
SGA_v2.0_scaffold11G05941 Striga asiatica HOM05D004095 ORTHO05D003197 2.4e-07 60.8 360 28.9
Manes.18G010907 Manihot esculenta HOM05D004095 ORTHO05D003197 3.1e-07 60.5 366 28.7
TWI12G1115 Tripterygium wilfordii HOM05D004095 ORTHO05D003197 4.0e-07 60.1 367 29.7
Duzib093G1456 Durio zibethinus HOM05D004095 ORTHO05D003197 5.2e-07 59.7 355 24.8
PSO170G2543 Papaver somniferum HOM05D004095 ORTHO05D003197 6.9e-07 59.3 372 27.4
FvH4_1g11400 Fragaria vesca HOM05D024588 ORTHO05D003197 4.4e-06 56.6 223 38.6
CiPaw.07G146700 Carya illinoinensis HOM05D004095 ORTHO05D003197 5.8e-06 56.2 380 26.8
unitig_749.g13901 Utricularia gibba HOM05D004095 ORTHO05D003197 7.6e-06 55.8 356 29.2
Lj4A21T58 Lonicera japonica HOM05D004095 ORTHO05D003197 9.9e-06 55.5 386 30.1


User provided reference genes

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