Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung04988 Brassica carinata HOM05D004481 ORTHO05D005350 8.1e-54 213.4 101 100.0
BcaNung04989 Brassica carinata HOM05D004481 ORTHO05D005350 2.2e-43 178.7 98 90.8
A01p04140 Brassica napus HOM05D004481 ORTHO05D005350 2.7e-41 171.8 98 87.8
C01p04510 Brassica napus HOM05D004481 ORTHO05D005350 2.7e-41 171.8 98 87.8
BolC1t00437H Brassica oleracea HOM05D004481 ORTHO05D005350 2.7e-41 171.8 98 87.8
BraA01t00403Z Brassica rapa HOM05D004481 ORTHO05D005350 2.7e-41 171.8 98 87.8
CARHR242510 Cardamine hirsuta HOM05D004481 ORTHO05D005350 1.1e-39 166.4 98 85.7
Thhalv10025895m.g Eutrema salsugineum HOM05D004481 ORTHO05D005350 1.9e-39 165.6 98 85.7
Carub.0007s0609 Capsella rubella HOM05D004481 ORTHO05D005350 1.3e-38 162.9 98 83.7
Sp7g32060 Schrenkiella parvula HOM05D004481 ORTHO05D005350 1.3e-38 162.9 98 83.7
AL7G17000 Arabidopsis lyrata HOM05D004481 ORTHO05D005350 1.8e-37 159.1 98 81.6
Aa31LG2G16850 Aethionema arabicum HOM05D004481 ORTHO05D005350 1.5e-36 156.0 98 80.6
THA.LOC104807234 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 1.3e-35 152.9 96 79.2
AT4G34270 Arabidopsis thaliana HOM05D004481 ORTHO05D005350 2.2e-35 152.1 98 78.6
THA.LOC104819549 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 3.8e-35 151.4 98 75.5
TWI75G0922 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 4.8e-30 134.4 93 71.0
Lj5A215G63 Lonicera japonica HOM05D004481 ORTHO05D005350 6.3e-30 134.0 94 70.2
TAR628G0287 Trochodendron aralioides HOM05D004481 ORTHO05D005350 8.2e-30 133.7 94 70.2
Rhsim11G0156300 Rhododendron simsii HOM05D004481 ORTHO05D005350 1.1e-29 133.3 94 69.1
Ca_11058_v3 Cicer arietinum L. HOM05D004481 ORTHO05D005350 1.8e-29 132.5 93 68.8
CSS0002878 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 3.1e-29 131.7 94 69.1
CSS0015264 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 3.1e-29 131.7 94 69.1
CANSAT25G3441 Cannabis sativa HOM05D004481 ORTHO05D005350 3.1e-29 131.7 94 67.0
Gohir.A12G021100 Gossypium hirsutum HOM05D004481 ORTHO05D005350 4.1e-29 131.3 94 69.1
Nn1g04655 Nelumbo nucifera HOM05D004481 ORTHO05D005350 4.1e-29 131.3 94 67.0
CANSAT25G2190 Cannabis sativa HOM05D004481 ORTHO05D005350 5.3e-29 131.0 94 67.0
CiPaw.05G013400 Carya illinoinensis HOM05D004481 ORTHO05D005350 5.3e-29 131.0 94 69.1
Gohir.D12G021400 Gossypium hirsutum HOM05D004481 ORTHO05D005350 5.3e-29 131.0 97 68.0
Gorai.008G021700 Gossypium raimondii HOM05D004481 ORTHO05D005350 5.3e-29 131.0 97 68.0
TWI79G1728 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 5.3e-29 131.0 93 67.7
TAR376G0836 Trochodendron aralioides HOM05D004481 ORTHO05D005350 5.3e-29 131.0 94 68.1
Ciclev10028970m.g Citrus clementina HOM05D004481 ORTHO05D005350 6.9e-29 130.6 93 71.0
Duzib052G1089 Durio zibethinus HOM05D004481 ORTHO05D005350 6.9e-29 130.6 94 69.1
Psat6g216600 Pisum sativum HOM05D004481 ORTHO05D005350 9.0e-29 130.2 91 69.2
Thecc.02G111500 Theobroma cacao HOM05D004481 ORTHO05D005350 9.0e-29 130.2 94 68.1
Cc02_g19430 Coffea canephora HOM05D004481 ORTHO05D005350 1.2e-28 129.8 94 68.1
Dinv42206 Davidia involucrata HOM05D002228 ORTHO05D005350 1.2e-28 129.8 94 67.0
Lj5g0012751 Lotus japonicus HOM05D004481 ORTHO05D005350 1.2e-28 129.8 98 66.3
Aqoxy5G01130 Aquilegia oxysepala HOM05D004481 ORTHO05D005350 1.5e-28 129.4 95 68.4
Atru.chr5.2445 Acer truncatum HOM05D004481 ORTHO05D005350 2.6e-28 128.6 93 67.7
MSTRG.20195 Avicennia marina HOM05D004481 ORTHO05D005350 2.6e-28 128.6 93 69.9
AUR62010332 Chenopodium quinoa HOM05D004481 ORTHO05D005350 2.6e-28 128.6 91 68.1
Potri.009G093200 Populus trichocarpa HOM05D004481 ORTHO05D005350 2.6e-28 128.6 93 69.9
Sabra09G0071800 Salix brachista HOM05D004481 ORTHO05D005350 4.5e-28 127.9 93 68.8
CSS0013759 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 5.9e-28 127.5 94 68.1
Manes.07G066500 Manihot esculenta HOM05D004481 ORTHO05D005350 5.9e-28 127.5 91 70.3
Sc18g0005550 Simmondsia chinensis HOM05D004481 ORTHO05D005350 5.9e-28 127.5 93 67.7
arahy.Tifrunner.gnm1.ann1.5RC8JY Arachis hypogaea HOM05D004481 ORTHO05D005350 7.7e-28 127.1 93 67.7
PSO210G1902 Papaver somniferum HOM05D004481 ORTHO05D005350 7.7e-28 127.1 94 68.1
CiPaw.06G168400 Carya illinoinensis HOM05D004481 ORTHO05D005350 1.0e-27 126.7 94 68.1
PSO170G4403 Papaver somniferum HOM05D004481 ORTHO05D005350 1.0e-27 126.7 94 67.0
RcHm_v2.0_Chr6g0254491 Rosa chinensis HOM05D004481 ORTHO05D005350 1.0e-27 126.7 93 66.7
Prupe.8G137600 Prunus persica HOM05D004481 ORTHO05D005350 1.7e-27 125.9 98 65.3
PGR142G4205 Punica granatum HOM05D004481 ORTHO05D005350 1.7e-27 125.9 94 63.8
Nitab4.5_0002647g0020 Nicotiana tabacum HOM05D004481 ORTHO05D005350 2.2e-27 125.6 93 64.5
GSVIVG01037896001 Vitis vinifera HOM05D004481 ORTHO05D005350 2.2e-27 125.6 93 65.6
Oeu037260.1 Olea europaea HOM05D004481 ORTHO05D005350 2.9e-27 125.2 93 66.7
SGA_v2.0_scaffold225G42995 Striga asiatica HOM05D004481 ORTHO05D005350 2.9e-27 125.2 93 65.6
Hma1.2p1_1023F.1_g248990 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 3.8e-27 124.8 93 66.7
Potri.001G298500 Populus trichocarpa HOM05D004481 ORTHO05D005350 3.8e-27 124.8 93 66.7
CAN.G606.21 Capsicum annuum HOM05D004481 ORTHO05D005350 5.0e-27 124.4 93 65.6
Migut.B00402 Erythranthe guttata HOM05D004481 ORTHO05D005350 5.0e-27 124.4 91 64.8
Solyc10g049850.3 Solanum lycopersicum HOM05D004481 ORTHO05D005350 5.0e-27 124.4 93 63.4
FAN15G0583 Fragaria x ananassa HOM05D004481 ORTHO05D005350 6.5e-27 124.0 93 65.6
FAN24G0473 Fragaria x ananassa HOM05D004481 ORTHO05D005350 6.5e-27 124.0 93 65.6
FAN27G3202 Fragaria x ananassa HOM05D004481 ORTHO05D005350 6.5e-27 124.0 93 65.6
Glyma.20G130700 Glycine max HOM05D004481 ORTHO05D005350 6.5e-27 124.0 93 65.6
MD10G1100100 Malus domestica HOM05D004481 ORTHO05D005350 6.5e-27 124.0 94 66.0
Nitab4.5_0003699g0050 Nicotiana tabacum HOM05D004481 ORTHO05D005350 6.5e-27 124.0 98 64.3
CSS0003948 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 8.5e-27 123.6 94 66.0
Lalb_Chr02g0145211 Lupinus albus HOM05D004481 ORTHO05D005350 8.5e-27 123.6 96 64.6
Medtr1g107045 Medicago truncatula HOM05D004481 ORTHO05D005350 8.5e-27 123.6 93 65.6
Sed0018810 Sechium edule HOM05D004481 ORTHO05D005350 8.5e-27 123.6 93 65.6
Cpa.g.sc106.118 Carica papaya HOM05D004481 ORTHO05D005350 1.4e-26 122.9 94 63.8
FvH4_2g04780 Fragaria vesca HOM05D004481 ORTHO05D005350 1.4e-26 122.9 92 66.3
Glyma.10G260500 Glycine max HOM05D004481 ORTHO05D005350 1.4e-26 122.9 93 65.6
Sed0023236 Sechium edule HOM05D004481 ORTHO05D005350 1.9e-26 122.5 108 59.3
Actinidia27975 Actinidia chinensis HOM05D004481 ORTHO05D005350 2.5e-26 122.1 94 66.0
CsaV3_7G008050 Cucumis sativus L. HOM05D004481 ORTHO05D005350 2.5e-26 122.1 98 61.2
TPR.G27083 Trifolium pratense HOM05D004481 ORTHO05D005350 2.5e-26 122.1 93 63.4
ClCG02G006560 Citrullus lanatus HOM05D004481 ORTHO05D005350 3.2e-26 121.7 108 57.4
Lalb_Chr21g0308241 Lupinus albus HOM05D004481 ORTHO05D005350 3.2e-26 121.7 95 65.3
MELO3C018500.2 Cucumis melo HOM05D004481 ORTHO05D005350 7.2e-26 120.6 98 61.2
SalBow6G4388 Salvia bowleyana HOM05D004481 ORTHO05D005350 7.2e-26 120.6 91 64.8
SalBow6G4779 Salvia bowleyana HOM05D004481 ORTHO05D005350 7.2e-26 120.6 91 64.8
Nitab4.5_0001480g0100 Nicotiana tabacum HOM05D004481 ORTHO05D005350 9.4e-26 120.2 93 64.5
PGSC0003DMG400025761 Solanum tuberosum HOM05D004481 ORTHO05D005350 9.4e-26 120.2 95 63.2
Zm00001eb214380 Zea mays HOM05D004481 ORTHO05D005350 9.4e-26 120.2 96 61.5
Eucgr.I01088 Eucalyptus grandis HOM05D004481 ORTHO05D005350 1.2e-25 119.8 94 63.8
VMungo0720G1503 Vigna mungo HOM05D004481 ORTHO05D005350 1.2e-25 119.8 93 64.5
Phvul.007G041700 Phaseolus vulgaris HOM05D004481 ORTHO05D005350 2.1e-25 119.0 92 63.0
vmacro01990 Vaccinium macrocarpon HOM05D004481 ORTHO05D005350 2.3e-24 115.5 101 59.4
HanXRQChr04g0105981 Helianthus annuus HOM05D004481 ORTHO05D005350 3.0e-24 115.2 94 61.7
Nn5g30459 Nelumbo nucifera HOM05D004481 ORTHO05D005350 3.0e-24 115.2 97 62.9
Sopen10g019880 Solanum pennellii HOM05D004481 ORTHO05D005350 3.0e-24 115.2 84 63.1
ECA234G2632 Erigeron canadensis HOM05D004481 ORTHO05D005350 3.9e-24 114.8 94 60.6
Os03g0760600 Oryza sativa ssp. japonica HOM05D004481 ORTHO05D005350 3.9e-24 114.8 95 61.1
unitig_0.g879 Utricularia gibba HOM05D004481 ORTHO05D005350 1.5e-23 112.8 93 60.2
Peaxi162Scf00016g02527 Petunia axillaris HOM05D004481 ORTHO05D005350 6.3e-22 107.5 131 48.1
ATR0661G316 Amborella trichopoda HOM05D004481 ORTHO05D005350 1.1e-21 106.7 94 58.5
CDE02G3699 Ceratophyllum demersum HOM05D004481 ORTHO05D005350 1.3e-19 99.8 97 53.6
QL11p032653 Quercus lobata HOM05D004481 ORTHO05D005350 2.2e-19 99.0 52 86.5
Rhsim11G0157800 Rhododendron simsii HOM05D004481 ORTHO05D005350 3.8e-19 98.2 76 63.2
arahy.Tifrunner.gnm1.ann1.PGW4NS Arachis hypogaea HOM05D004481 ORTHO05D005350 3.2e-18 95.1 54 79.6
EL10Ac9g22252 Beta vulgaris HOM05D004481 ORTHO05D005350 5.5e-18 94.4 74 62.2
Cfa004607 Carpinus fangiana HOM05D004481 ORTHO05D005350 5.5e-18 94.4 52 80.8
DCAR_021976 Daucus carota HOM05D004481 ORTHO05D005350 7.2e-18 94.0 52 80.8
AUR62039053 Chenopodium quinoa HOM05D004481 ORTHO05D005350 9.4e-18 93.6 95 51.6
SEGI_10030 Sequoiadendron giganteum HOM05D004481 ORTHO05D005350 6.1e-17 90.9 93 50.5
Hund06305 Selenicereus undatus HOM05D004481 ORTHO05D005350 7.9e-17 90.5 75 60.0
PGSC0003DMG400023263 Solanum tuberosum HOM05D004481 ORTHO05D005350 7.9e-17 90.5 52 76.9
Mapoly0064s0080 Marchantia polymorpha HOM05D004481 ORTHO05D005350 1.4e-16 89.7 97 50.5
Hma1.2p1_1023F.1_g249000 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 1.8e-16 89.4 54 74.1
SHI05271 Sapria himalayana HOM05D004481 ORTHO05D005350 3.9e-16 88.2 52 76.9
FAN20G2321 Fragaria x ananassa HOM05D004481 ORTHO05D005350 6.7e-16 87.4 74 59.5
Pp3c10_18670 Physcomitrium patens HOM05D004481 ORTHO05D005350 2.6e-15 85.5 95 49.5
Lsat_1_v5_gn_5_116421 Lactuca sativa HOM05D004481 ORTHO05D005350 2.8e-14 82.0 52 69.2
SMO361G0327 Selaginella moellendorffii HOM05D004481 ORTHO05D005350 2.4e-13 79.0 93 48.4
BcaNung04162 Brassica carinata HOM05D004481 ORTHO05D005350 7.0e-13 77.4 37 100.0
GSVIVG01003443001 Vitis vinifera HOM05D004481 ORTHO05D005350 1.1e-10 70.1 46 65.2
GSVIVG01003244001 Vitis vinifera HOM05D004481 ORTHO05D005350 1.9e-10 69.3 46 65.2
GSVIVG01030751001 Vitis vinifera HOM05D004481 ORTHO05D005350 1.9e-10 69.3 46 65.2
RcHm_v2.0_Chr6g0257521 Rosa chinensis HOM05D004481 ORTHO05D005350 7.2e-10 67.4 61 52.5
GSVIVG01030757001 Vitis vinifera HOM05D004481 ORTHO05D005350 9.4e-10 67.0 46 60.9
PRCOL_00000955 Prasinoderma coloniale HOM05D004481 ORTHO05D005350 1.6e-09 66.2 87 42.5
AagrBONN_evm.TU.Sc2ySwM_228.2403 Anthoceros agrestis HOM05D004481 ORTHO05D005350 3.6e-09 65.1 50 64.0
Haze_10202 Corylus avellana HOM05D004481 ORTHO05D005350 1.8e-08 62.8 52 55.8
Ah.01g010900 Amaranthus hybridus HOM05D004481 ORTHO05D005350 4.0e-08 61.6 85 43.5
MCO13G563 Micromonas commoda HOM05D004481 ORTHO05D005350 1.1e-07 60.1 78 44.9
CBR_g36716 Chara braunii HOM05D004481 ORTHO05D005350 1.3e-06 56.6 37 67.6
CSS0037652 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 2.2e-06 55.8 34 67.6


User provided reference genes

Program Settings