Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung04815 Brassica carinata HOM05D002890 ORTHO05D009847 2.9e-79 298.5 151 100.0
C05p09820 Brassica napus HOM05D002890 ORTHO05D009847 1.4e-54 216.5 141 79.4
BcaC05g25040 Brassica carinata HOM05D002890 ORTHO05D009847 2.4e-54 215.7 141 78.7
Sp1g10320 Schrenkiella parvula HOM05D002890 ORTHO05D009847 2.1e-53 212.6 143 79.7
A06p08270 Brassica napus HOM05D002890 ORTHO05D009847 7.9e-53 210.7 140 78.6
BraA06t24026Z Brassica rapa HOM05D002890 ORTHO05D009847 1.0e-52 210.3 140 78.6
CARHR012020 Cardamine hirsuta HOM05D002890 ORTHO05D009847 3.9e-52 208.4 143 78.3
BolC5t29723H Brassica oleracea HOM05D002890 ORTHO05D009847 4.3e-51 204.9 140 75.7
AL1G22850 Arabidopsis lyrata HOM05D002890 ORTHO05D009847 1.6e-50 203.0 142 78.2
Carub.0001s1135 Capsella rubella HOM05D002890 ORTHO05D009847 2.8e-50 202.2 141 79.4
AT1G11710 Arabidopsis thaliana HOM05D002890 ORTHO05D009847 8.1e-50 200.7 142 77.5
Thhalv10007012m.g Eutrema salsugineum HOM05D002890 ORTHO05D009847 1.8e-49 199.5 143 74.8
Aa31LG1G3060 Aethionema arabicum HOM05D002890 ORTHO05D009847 1.3e-42 176.8 141 66.7
Ciclev10014539m.g Citrus clementina HOM05D002890 ORTHO05D009847 4.2e-30 135.2 126 55.6
Atru.chr10.2229 Acer truncatum HOM05D002890 ORTHO05D009847 7.2e-30 134.4 126 54.8
Haze_20537 Corylus avellana HOM05D002890 ORTHO05D009847 2.1e-29 132.9 139 50.4
Dinv13895 Davidia involucrata HOM05D002975 ORTHO05D003564 2.1e-29 132.9 134 52.2
MD02G1262300 Malus domestica HOM05D002890 ORTHO05D009847 4.6e-29 131.7 129 51.9
MD07G1057900 Malus domestica HOM05D002890 ORTHO05D009847 6.1e-29 131.3 131 51.1
Hma1.2p1_0749F.1_g212590 Hydrangea macrophylla HOM05D002890 ORTHO05D009847 1.0e-28 130.6 144 47.9
Duzib235G0255 Durio zibethinus HOM05D002890 ORTHO05D009847 1.8e-28 129.8 131 51.1
Prupe.2G064100 Prunus persica HOM05D002890 ORTHO05D009847 3.0e-28 129.0 131 51.9
CANSAT56G2257 Cannabis sativa HOM05D002890 ORTHO05D009847 6.7e-28 127.9 129 50.4
Cfa000220 Carpinus fangiana HOM05D002890 ORTHO05D005855 6.7e-28 127.9 139 48.2
COL.COLO4_31777 Corchorus olitorius HOM05D002890 ORTHO05D009847 1.5e-27 126.7 133 50.4
Lalb_Chr01g0001971 Lupinus albus HOM05D002890 ORTHO05D009847 2.0e-27 126.3 141 47.5
TAR624G0355 Trochodendron aralioides HOM05D002890 ORTHO05D009847 2.0e-27 126.3 133 50.4
MELO3C035731.2 Cucumis melo HOM05D002890 ORTHO05D009847 1.3e-26 123.6 133 51.1
Sabra11G0001800 Salix brachista HOM05D002890 ORTHO05D009847 2.8e-26 122.5 138 47.8
Sabra11G0002200 Salix brachista HOM05D002890 ORTHO05D009847 2.8e-26 122.5 138 47.8
Sabra11G0002700 Salix brachista HOM05D002890 ORTHO05D009847 2.8e-26 122.5 138 47.8
Sed0010805 Sechium edule HOM05D002890 ORTHO05D009847 2.8e-26 122.5 133 51.9
Manes.14G133200 Manihot esculenta HOM05D002890 ORTHO05D009847 4.8e-26 121.7 140 46.4
ClCG03G004730 Citrullus lanatus HOM05D002890 ORTHO05D009847 1.1e-25 120.6 139 48.9
CSS0001323 Camellia sinensis var. sinensis HOM05D002890 ORTHO05D009847 1.8e-25 119.8 133 45.9
Potri.011G003700 Populus trichocarpa HOM05D002890 ORTHO05D009847 1.8e-25 119.8 138 47.1
CsaV3_1G010770 Cucumis sativus L. HOM05D002890 ORTHO05D009847 2.4e-25 119.4 121 52.1
TWI63G0498 Tripterygium wilfordii HOM05D002890 ORTHO05D009847 6.9e-25 117.9 139 43.9
Lj2P399T24 Lonicera japonica HOM05D002890 ORTHO05D009847 1.2e-24 117.1 125 48.0
Gohir.D06G154100 Gossypium hirsutum HOM05D002890 ORTHO05D009847 2.0e-24 116.3 124 48.4
PGR042G0565 Punica granatum HOM05D002890 ORTHO05D009847 2.0e-24 116.3 127 44.1
arahy.Tifrunner.gnm1.ann1.NUL68I Arachis hypogaea HOM05D002890 ORTHO05D009847 2.6e-24 115.9 136 44.1
Migut.M01318 Erythranthe guttata HOM05D002890 ORTHO05D009847 2.6e-24 115.9 139 43.9
arahy.Tifrunner.gnm1.ann1.59TWC6 Arachis hypogaea HOM05D002890 ORTHO05D009847 3.4e-24 115.5 136 43.4
arahy.Tifrunner.gnm1.ann1.GQ8ZCN Arachis hypogaea HOM05D002890 ORTHO05D009847 3.4e-24 115.5 136 45.6
Gorai.010G180200 Gossypium raimondii HOM05D002890 ORTHO05D009847 3.4e-24 115.5 134 45.5
Nn1g03517 Nelumbo nucifera HOM05D002890 ORTHO05D009847 1.3e-23 113.6 124 46.0
MBI05_g05281_MAGBIO Magnolia biondii HOM05D002890 ORTHO05D009847 3.8e-23 112.1 132 46.2
Cc09_g01660 Coffea canephora HOM05D002890 ORTHO05D009847 1.9e-22 109.8 137 40.9
Lj4g0000542 Lotus japonicus HOM05D002890 ORTHO05D009847 1.9e-22 109.8 130 45.4
HanXRQChr05g0129511 Helianthus annuus HOM05D002890 ORTHO05D009847 2.1e-21 106.3 137 42.3
Eucgr.E02357 Eucalyptus grandis HOM05D002890 ORTHO05D009847 6.1e-21 104.8 126 42.1
Rhsim13G0154100 Rhododendron simsii HOM05D002890 ORTHO05D009847 8.8e-20 100.9 133 41.4
SGA_v2.0_scaffold7G03840 Striga asiatica HOM05D002890 ORTHO05D009847 1.1e-19 100.5 139 39.6
CAN.G578.7 Capsicum annuum HOM05D002890 ORTHO05D009847 1.5e-19 100.1 139 37.4
Lsat_1_v5_gn_7_16080 Lactuca sativa HOM05D002890 ORTHO05D009847 4.4e-19 98.6 127 45.7
SGA_v2.0_scaffold4G01915 Striga asiatica HOM05D002890 ORTHO05D009847 2.8e-18 95.9 139 38.1
Sc17g0007390 Simmondsia chinensis HOM05D002890 ORTHO05D009847 2.6e-16 89.4 139 37.4
CiPaw.09G092100 Carya illinoinensis HOM05D002890 ORTHO05D009847 6.7e-12 74.7 81 48.1
QL05p073136 Quercus lobata HOM05D002890 ORTHO05D009847 2.8e-10 69.3 87 48.3
HPP92_012317 Vanilla planifolia HOM05D002890 ORTHO05D009847 1.4e-09 67.0 111 34.2
HPP92_012398 Vanilla planifolia HOM05D002890 ORTHO05D009847 5.3e-09 65.1 111 34.2
Nitab4.5_0006305g0040 Nicotiana tabacum HOM05D002890 ORTHO05D009847 3.5e-08 62.4 96 36.5
MBI18_g04911_MAGBIO Magnolia biondii HOM05D002890 ORTHO05D009847 7.7e-08 61.2 66 48.5
arahy.Tifrunner.gnm1.ann1.YX7L6C Arachis hypogaea HOM05D002890 ORTHO05D009847 1.0e-07 60.8 141 30.5
MELO3C025970.2 Cucumis melo HOM05D006931 ORTHO05D008782 8.5e-07 57.8 93 35.5
CsaV3_6G009550 Cucumis sativus L. HOM05D006931 ORTHO05D008782 1.9e-06 56.6 96 31.2
Hund17802 Selenicereus undatus HOM05D007358 ORTHO05D009117 4.2e-06 55.5 136 32.4
CAN.G805.1 Capsicum annuum HOM05D006931 ORTHO05D008782 5.5e-06 55.1 79 38.0
Cpa.g.sc211.20 Carica papaya HOM05D006931 ORTHO05D008782 5.5e-06 55.1 90 33.3
SEGI_11241 Sequoiadendron giganteum HOM05D007496 ORTHO05D009479 5.5e-06 55.1 115 31.3
ClCG02G009270 Citrullus lanatus HOM05D006931 ORTHO05D008782 7.2e-06 54.7 93 34.4


User provided reference genes

Program Settings