Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung04812 Brassica carinata HOM05D002166 ORTHO05D011697 7.8e-89 330.5 172 100.0
BcaNung04810 Brassica carinata HOM05D002166 ORTHO05D011697 8.6e-72 273.9 145 100.0
BcaNung04811 Brassica carinata HOM05D002166 ORTHO05D011697 8.6e-72 273.9 145 100.0
BcaC05g25038 Brassica carinata HOM05D002166 ORTHO05D011697 7.8e-65 250.8 132 100.0
Sp1g10300 Schrenkiella parvula HOM05D002166 ORTHO05D011697 9.3e-50 200.7 161 70.2
BcaC07g38682 Brassica carinata HOM05D002166 ORTHO05D011697 2.3e-48 196.1 147 75.5
BolC8t49117H Brassica oleracea HOM05D002166 ORTHO05D011697 2.3e-48 196.1 147 75.5
Thhalv10009979m.g Eutrema salsugineum HOM05D002166 ORTHO05D011697 3.0e-48 195.7 141 77.3
C08p14830 Brassica napus HOM05D002166 ORTHO05D011697 5.1e-48 194.9 147 74.8
A08p33310 Brassica napus HOM05D002166 ORTHO05D011697 2.5e-47 192.6 147 74.1
BraA08t35248Z Brassica rapa HOM05D002166 ORTHO05D011697 3.3e-47 192.2 147 74.1
C05p09800 Brassica napus HOM05D002166 ORTHO05D011697 5.6e-47 191.4 147 72.8
AT1G11690 Arabidopsis thaliana HOM05D002166 ORTHO05D011697 2.8e-46 189.1 147 70.7
AL1G22830 Arabidopsis lyrata HOM05D002166 ORTHO05D011697 9.0e-45 184.1 147 68.7
Carub.0001s1133 Capsella rubella HOM05D002166 ORTHO05D011697 7.6e-44 181.0 147 68.7
BcaB03g13239 Brassica carinata HOM05D002166 ORTHO05D011697 4.2e-42 175.3 147 68.0
CARHR012000 Cardamine hirsuta HOM05D002166 ORTHO05D011697 4.6e-41 171.8 147 67.3
BcaC05g25035 Brassica carinata HOM05D002166 ORTHO05D011697 6.1e-25 118.2 79 78.5
A06p08240 Brassica napus HOM05D002166 ORTHO05D011697 1.3e-19 100.5 64 81.2
BraA06t24024Z Brassica rapa HOM05D002166 ORTHO05D011697 8.5e-19 97.8 64 79.7
THA.LOC104824541 Tarenaya hassleriana HOM05D002166 ORTHO05D011697 5.1e-16 88.6 147 40.8
THA.LOC104824542 Tarenaya hassleriana HOM05D002166 ORTHO05D011697 5.1e-16 88.6 147 40.8
A06p08250 Brassica napus HOM05D002166 ORTHO05D011697 8.5e-11 71.2 43 88.4
MD03G1201300 Malus domestica HOM05D002166 ORTHO05D002634 2.7e-09 66.2 161 34.8
MSTRG.15149 Avicennia marina HOM05D002166 ORTHO05D002634 1.0e-08 64.3 163 34.4
FAN25G0402 Fragaria x ananassa HOM05D002166 ORTHO05D002634 1.0e-08 64.3 161 34.2
QL08p010329 Quercus lobata HOM05D002166 ORTHO05D002634 1.8e-08 63.5 161 33.5
FAN21G3541 Fragaria x ananassa HOM05D002166 ORTHO05D002634 3.9e-08 62.4 160 33.8
Sed0016610 Sechium edule HOM05D002166 ORTHO05D002634 8.8e-08 61.2 165 30.9
FvH4_3g22650 Fragaria vesca HOM05D002166 ORTHO05D002634 2.0e-07 60.1 161 32.9
FAN16G1047 Fragaria x ananassa HOM05D002166 ORTHO05D002634 2.6e-07 59.7 161 32.9
Sc16g0006060 Simmondsia chinensis HOM05D002166 ORTHO05D002634 5.7e-07 58.5 163 31.9
TWI38G0482 Tripterygium wilfordii HOM05D002166 ORTHO05D002634 5.7e-07 58.5 161 32.3
BcaC07g38684 Brassica carinata HOM05D002166 ORTHO05D011697 7.4e-07 58.2 48 70.8
Sed0003386 Sechium edule HOM05D002166 ORTHO05D002634 7.4e-07 58.2 161 31.7
DCAR_022561 Daucus carota HOM05D002166 ORTHO05D002634 9.7e-07 57.8 126 35.7
Lj8A169T85 Lonicera japonica HOM05D002166 ORTHO05D002634 1.3e-06 57.4 126 34.9
CAN.G1404.1 Capsicum annuum HOM05D002166 ORTHO05D002634 1.7e-06 57.0 164 29.9
arahy.Tifrunner.gnm1.ann1.R34EKV Arachis hypogaea HOM05D002166 ORTHO05D002634 2.8e-06 56.2 126 34.9
arahy.Tifrunner.gnm1.ann1.WSU996 Arachis hypogaea HOM05D002166 ORTHO05D002634 2.8e-06 56.2 128 35.2
Glyma.18G097100 Glycine max HOM05D002166 ORTHO05D002634 2.8e-06 56.2 161 31.1
Ciclev10017731m.g Citrus clementina HOM05D002166 ORTHO05D002634 8.2e-06 54.7 135 34.8


User provided reference genes

Program Settings