Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung04807 Brassica carinata HOM05D005226 ORTHO05D004666 6.8e-57 223.8 115 100.0
BolC5t29718H Brassica oleracea HOM05D005226 ORTHO05D004666 2.3e-52 208.8 115 91.3
A06p08210 Brassica napus HOM05D005226 ORTHO05D004666 2.5e-51 205.3 115 89.6
BraA06t24021Z Brassica rapa HOM05D005226 ORTHO05D004666 2.5e-51 205.3 115 89.6
BcaC05g25032 Brassica carinata HOM05D005226 ORTHO05D004666 4.3e-51 204.5 115 89.6
C05p09770 Brassica napus HOM05D005226 ORTHO05D004666 3.6e-50 201.4 115 88.7
C08p48100 Brassica napus HOM05D005226 ORTHO05D004666 4.4e-48 194.5 115 85.2
BcaC07g41768 Brassica carinata HOM05D005226 ORTHO05D004666 3.8e-47 191.4 115 84.3
A09p64400 Brassica napus HOM05D005226 ORTHO05D004666 8.4e-47 190.3 115 83.5
BraA09t41784Z Brassica rapa HOM05D005226 ORTHO05D004666 8.4e-47 190.3 115 83.5
BcaB08g37410 Brassica carinata HOM05D005226 ORTHO05D004666 1.1e-46 189.9 115 82.6
CARHR011960 Cardamine hirsuta HOM05D005226 ORTHO05D004666 2.4e-46 188.7 115 81.7
AT1G11655 Arabidopsis thaliana HOM05D005226 ORTHO05D004666 1.9e-43 179.1 115 80.0
Thhalv10009573m.g Eutrema salsugineum HOM05D005226 ORTHO05D004666 1.6e-42 176.0 115 75.7
AL1G22790 Arabidopsis lyrata HOM05D005226 ORTHO05D004666 1.4e-41 172.9 115 77.4
Carub.0001s1129 Capsella rubella HOM05D005226 ORTHO05D004666 5.3e-41 171.0 117 77.8
A08p33360 Brassica napus HOM05D005226 ORTHO05D004666 2.2e-39 165.6 115 71.3
BcaC07g38677 Brassica carinata HOM05D005226 ORTHO05D004666 4.9e-39 164.5 116 71.6
BolC8t49112H Brassica oleracea HOM05D005226 ORTHO05D004666 4.9e-39 164.5 116 71.6
BraA08t35253Z Brassica rapa HOM05D005226 ORTHO05D004666 1.9e-38 162.5 115 70.4
C08p14770 Brassica napus HOM05D005226 ORTHO05D004666 5.1e-36 154.5 117 69.2
BcaB03g13244 Brassica carinata HOM05D005226 ORTHO05D004666 2.4e-33 145.6 117 65.0
Aa31LG1G3110 Aethionema arabicum HOM05D005226 ORTHO05D004666 9.0e-33 143.7 115 67.0
THA.LOC104818840 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 1.9e-30 136.0 118 61.9
BolC8t52343H Brassica oleracea HOM05D005226 ORTHO05D004666 6.1e-21 104.4 63 87.3
Thecc.06G087600 Theobroma cacao HOM05D005226 ORTHO05D004666 1.8e-17 92.8 116 46.6
COL.COLO4_31758 Corchorus olitorius HOM05D005226 ORTHO05D004666 3.1e-17 92.0 115 45.2
Thecc.06G219100 Theobroma cacao HOM05D005226 ORTHO05D004666 1.2e-16 90.1 116 45.7
Manes.16G008100 Manihot esculenta HOM05D005226 ORTHO05D004666 2.0e-16 89.4 97 51.5
Duzib235G0113 Durio zibethinus HOM05D005226 ORTHO05D004666 1.0e-15 87.0 114 42.1
Medtr2g022960 Medicago truncatula HOM05D005226 ORTHO05D004666 2.2e-15 85.9 99 47.5
Potri.004G016800 Populus trichocarpa HOM05D005226 ORTHO05D004666 1.1e-14 83.6 106 47.2
Duzib160G0401 Durio zibethinus HOM05D005226 ORTHO05D004666 1.9e-14 82.8 115 43.5
Gorai.009G178000 Gossypium raimondii HOM05D005226 ORTHO05D004666 1.9e-14 82.8 116 44.8
Potri.011G002100 Populus trichocarpa HOM05D005226 ORTHO05D004666 2.5e-14 82.4 104 47.1
TWI38G0534 Tripterygium wilfordii HOM05D005226 ORTHO05D004666 2.5e-14 82.4 103 50.5
Ciclev10017536m.g Citrus clementina HOM05D005226 ORTHO05D004666 3.2e-14 82.0 112 42.0
Glyma.13G205400 Glycine max HOM05D005226 ORTHO05D004666 3.2e-14 82.0 102 44.1
Glyma.15G107000 Glycine max HOM05D005226 ORTHO05D004666 3.2e-14 82.0 102 43.1
Sabra04G0009100 Salix brachista HOM05D005226 ORTHO05D004666 3.2e-14 82.0 103 46.6
Gohir.A05G169600 Gossypium hirsutum HOM05D005226 ORTHO05D004666 4.2e-14 81.6 116 44.8
Atru.chr10.2207 Acer truncatum HOM05D005226 ORTHO05D004666 7.2e-14 80.9 112 42.9
Duzib192G0836 Durio zibethinus HOM05D005226 ORTHO05D004666 7.2e-14 80.9 118 41.5
Cc09_g01800 Coffea canephora HOM05D005226 ORTHO05D004666 9.4e-14 80.5 113 42.5
Gohir.D05G172800 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.6e-13 79.7 116 44.0
TAR627G0695 Trochodendron aralioides HOM05D005226 ORTHO05D004666 3.6e-13 78.6 99 44.4
Gohir.A10G013400 Gossypium hirsutum HOM05D005226 ORTHO05D004666 6.1e-13 77.8 117 37.6
CiPaw.09G090600 Carya illinoinensis HOM05D005226 ORTHO05D004666 7.9e-13 77.4 96 50.0
Lj6g0027274 Lotus japonicus HOM05D005226 ORTHO05D004666 7.9e-13 77.4 110 40.9
Nitab4.5_0003254g0050 Nicotiana tabacum HOM05D005226 ORTHO05D004666 1.4e-12 76.6 101 41.6
Gohir.D10G013300 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.8e-12 76.3 105 38.1
Gorai.011G015000 Gossypium raimondii HOM05D005226 ORTHO05D004666 1.8e-12 76.3 105 38.1
PGR004G1778 Punica granatum HOM05D005226 ORTHO05D004666 1.8e-12 76.3 111 40.5
CANSAT56G2875 Cannabis sativa HOM05D005226 ORTHO05D004666 2.3e-12 75.9 102 43.1
Eucgr.D01311 Eucalyptus grandis HOM05D005226 ORTHO05D004666 2.3e-12 75.9 89 42.7
TPR.G7637 Trifolium pratense HOM05D005226 ORTHO05D004666 2.3e-12 75.9 99 42.4
Gorai.010G180000 Gossypium raimondii HOM05D005226 ORTHO05D004666 3.0e-12 75.5 111 42.3
Sed0005209 Sechium edule HOM05D005226 ORTHO05D004666 3.9e-12 75.1 116 37.9
Dinv20040 Davidia involucrata HOM05D005226 ORTHO05D004666 5.1e-12 74.7 99 46.5
Lalb_Chr15g0087551 Lupinus albus HOM05D005226 ORTHO05D004666 5.1e-12 74.7 103 44.7
BcaC09g51183 Brassica carinata HOM05D009543 ORTHO05D004666 6.7e-12 74.3 119 39.5
C01p15970 Brassica napus HOM05D009543 ORTHO05D004666 6.7e-12 74.3 119 39.5
BolC1t01557H Brassica oleracea HOM05D009543 ORTHO05D004666 6.7e-12 74.3 119 39.5
BraA01t01269Z Brassica rapa HOM05D009543 ORTHO05D004666 6.7e-12 74.3 119 39.5
Cfa021903 Carpinus fangiana HOM05D005226 ORTHO05D004666 6.7e-12 74.3 105 44.8
Gohir.D06G153975 Gossypium hirsutum HOM05D005226 ORTHO05D004666 6.7e-12 74.3 111 42.3
Prupe.4G022200 Prunus persica HOM05D005226 ORTHO05D004666 6.7e-12 74.3 109 40.4
Lsat_1_v5_gn_4_59601 Lactuca sativa HOM05D005226 ORTHO05D004666 8.8e-12 73.9 80 45.0
Gohir.A06G148050 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.5e-11 73.2 112 41.1
Oeu051213.1 Olea europaea HOM05D005226 ORTHO05D004666 2.0e-11 72.8 97 43.3
ClCG01G022050 Citrullus lanatus HOM05D005226 ORTHO05D004666 2.5e-11 72.4 101 39.6
VMungo0540G0286 Vigna mungo HOM05D005226 ORTHO05D004666 2.5e-11 72.4 102 40.2
Haze_09878 Corylus avellana HOM05D005226 ORTHO05D004666 3.3e-11 72.0 102 44.1
Nn1g03549 Nelumbo nucifera HOM05D005226 ORTHO05D004666 4.3e-11 71.6 113 41.6
Eucgr.E04074 Eucalyptus grandis HOM05D005226 ORTHO05D004666 7.4e-11 70.9 111 42.3
PGSC0003DMG400004522 Solanum tuberosum HOM05D005226 ORTHO05D004666 7.4e-11 70.9 91 39.6
arahy.Tifrunner.gnm1.ann1.89FC4C Arachis hypogaea HOM05D005226 ORTHO05D004666 9.7e-11 70.5 86 41.9
Migut.M01309 Erythranthe guttata HOM05D005226 ORTHO05D004666 9.7e-11 70.5 105 42.9
MD05G1344200 Malus domestica HOM05D005226 ORTHO05D004666 9.7e-11 70.5 114 36.8
Aqoxy1G03603 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 1.3e-10 70.1 99 43.4
CARHR228690 Cardamine hirsuta HOM05D009543 ORTHO05D004666 1.3e-10 70.1 124 38.7
HanXRQChr16g0515991 Helianthus annuus HOM05D005226 ORTHO05D004666 1.3e-10 70.1 76 46.1
PSO832G1518 Papaver somniferum HOM05D005226 ORTHO05D004666 1.7e-10 69.7 68 44.1
QL05p073519 Quercus lobata HOM05D005226 ORTHO05D004666 1.7e-10 69.7 113 37.2
QL05p073756 Quercus lobata HOM05D005226 ORTHO05D004666 1.7e-10 69.7 113 37.2
Aqoxy4G01362 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 2.2e-10 69.3 77 48.1
DCAR_004212 Daucus carota HOM05D005226 ORTHO05D004666 2.2e-10 69.3 91 46.2
Eucgr.D01314 Eucalyptus grandis HOM05D005226 ORTHO05D004666 2.2e-10 69.3 89 39.3
FvH4_3g02270 Fragaria vesca HOM05D005226 ORTHO05D004666 2.2e-10 69.3 99 43.4
FAN25G2807 Fragaria x ananassa HOM05D005226 ORTHO05D004666 2.2e-10 69.3 99 44.4
Lalb_Chr18g0056301 Lupinus albus HOM05D005226 ORTHO05D004666 2.2e-10 69.3 105 40.0
Phvul.006G150300 Phaseolus vulgaris HOM05D005226 ORTHO05D004666 2.2e-10 69.3 102 40.2
BcaNung02262 Brassica carinata HOM05D009543 ORTHO05D004666 2.8e-10 68.9 119 38.7
Eucgr.L02166 Eucalyptus grandis HOM05D005226 ORTHO05D004666 2.8e-10 68.9 89 39.3
Nitab4.5_0006137g0040 Nicotiana tabacum HOM05D005226 ORTHO05D004666 2.8e-10 68.9 101 41.6
Peaxi162Scf00565g00021 Petunia axillaris HOM05D005226 ORTHO05D004666 2.8e-10 68.9 72 47.2
CsaV3_6G049110 Cucumis sativus L. HOM05D005226 ORTHO05D004666 3.7e-10 68.6 111 36.0
Hma1.2p1_1142F.1_g260990 Hydrangea macrophylla HOM05D005226 ORTHO05D004666 3.7e-10 68.6 99 40.4
Nn5g29365 Nelumbo nucifera HOM05D005226 ORTHO05D004666 3.7e-10 68.6 112 40.2
PSO210G5560 Papaver somniferum HOM05D005226 ORTHO05D004666 3.7e-10 68.6 68 44.1
Cfa000235 Carpinus fangiana HOM05D005226 ORTHO05D004666 4.8e-10 68.2 95 42.1
MELO3C007384.2 Cucumis melo HOM05D005226 ORTHO05D004666 4.8e-10 68.2 97 40.2
RcHm_v2.0_Chr5g0003391 Rosa chinensis HOM05D005226 ORTHO05D004666 4.8e-10 68.2 105 38.1
TAR624G0719 Trochodendron aralioides HOM05D005226 ORTHO05D004666 4.8e-10 68.2 98 39.8
AT4G21902 Arabidopsis thaliana HOM05D009543 ORTHO05D004666 1.1e-09 67.0 119 36.1
ECA234G1355 Erigeron canadensis HOM05D005226 ORTHO05D004666 1.1e-09 67.0 71 45.1
Haze_06787 Corylus avellana HOM05D005226 ORTHO05D004666 1.4e-09 66.6 102 44.1
DCAR_008143 Daucus carota HOM05D005226 ORTHO05D004666 1.4e-09 66.6 90 44.4
MD00G1206700 Malus domestica HOM05D005226 ORTHO05D004666 1.4e-09 66.6 68 52.9
MD10G1320200 Malus domestica HOM05D005226 ORTHO05D004666 1.4e-09 66.6 68 52.9
SGA_v2.0_scaffold89G27461 Striga asiatica HOM05D005226 ORTHO05D004666 1.8e-09 66.2 96 39.6
CiPaw.10G070100 Carya illinoinensis HOM05D005226 ORTHO05D004666 2.4e-09 65.9 103 43.7
Eucgr.E04072 Eucalyptus grandis HOM05D005226 ORTHO05D004666 2.4e-09 65.9 99 44.4
Thhalv10026583m.g Eutrema salsugineum HOM05D009543 ORTHO05D004666 3.1e-09 65.5 120 36.7
PGR042G2779 Punica granatum HOM05D005226 ORTHO05D004666 3.1e-09 65.5 66 53.0
MSTRG.13145 Avicennia marina HOM05D005226 ORTHO05D004666 4.1e-09 65.1 73 53.4
Oeu033894.1 Olea europaea HOM05D005226 ORTHO05D004666 4.1e-09 65.1 114 37.7
THA.LOC104806304 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 4.1e-09 65.1 120 35.0
Sp7g20070 Schrenkiella parvula HOM05D009543 ORTHO05D004666 5.3e-09 64.7 119 35.3
arahy.Tifrunner.gnm1.ann1.0GES1T Arachis hypogaea HOM05D005226 ORTHO05D004666 6.9e-09 64.3 67 53.7
arahy.Tifrunner.gnm1.ann1.1P1WAU Arachis hypogaea HOM05D005226 ORTHO05D004666 6.9e-09 64.3 67 53.7
Rhsim02G0108700 Rhododendron simsii HOM05D005226 ORTHO05D004666 6.9e-09 64.3 100 39.0
Rhsim02G0109500 Rhododendron simsii HOM05D005226 ORTHO05D004666 6.9e-09 64.3 100 39.0
Eucgr.E04071 Eucalyptus grandis HOM05D005226 ORTHO05D004666 9.1e-09 63.9 99 42.4
CAN.G569.14 Capsicum annuum HOM05D005226 ORTHO05D004666 1.2e-08 63.5 99 36.4
ClCG03G004790 Citrullus lanatus HOM05D005226 ORTHO05D004666 1.2e-08 63.5 102 36.3
Solyc02g080450.1 Solanum lycopersicum HOM05D005226 ORTHO05D004666 1.2e-08 63.5 107 33.6
Carub.0007s1945 Capsella rubella HOM05D009543 ORTHO05D004666 1.5e-08 63.2 124 35.5
BcaB01g02575 Brassica carinata HOM05D009543 ORTHO05D004666 2.0e-08 62.8 115 39.1
Glyma.18G063800 Glycine max HOM05D005226 ORTHO05D004666 2.0e-08 62.8 90 38.9
Rhsim02G0108200 Rhododendron simsii HOM05D005226 ORTHO05D004666 2.0e-08 62.8 103 38.8
C03p36430 Brassica napus HOM05D009543 ORTHO05D004666 3.4e-08 62.0 115 39.1
BolC3t15955H Brassica oleracea HOM05D009543 ORTHO05D004666 3.4e-08 62.0 115 39.1
Nitab4.5_0000005g0440 Nicotiana tabacum HOM05D005226 ORTHO05D004666 3.4e-08 62.0 113 35.4
Sopen02g025140 Solanum pennellii HOM05D005226 ORTHO05D004666 3.4e-08 62.0 87 36.8
AL7G31950 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 4.5e-08 61.6 78 42.3
Peaxi162Scf00262g00094 Petunia axillaris HOM05D005226 ORTHO05D004666 4.5e-08 61.6 81 40.7
A03p30180 Brassica napus HOM05D009543 ORTHO05D004666 5.9e-08 61.2 115 38.3
BraA03t12202Z Brassica rapa HOM05D009543 ORTHO05D004666 5.9e-08 61.2 115 38.3
EL10Ac8g20036 Beta vulgaris HOM05D005226 ORTHO05D004666 1.3e-07 60.1 55 50.9
SGA_v2.0_scaffold4G01918 Striga asiatica HOM05D005226 ORTHO05D004666 1.3e-07 60.1 75 44.0
Sed0027353 Sechium edule HOM05D005226 ORTHO05D004666 2.2e-07 59.3 91 41.8
Thhalv10029169m.g Eutrema salsugineum HOM05D009543 ORTHO05D004666 3.8e-07 58.5 113 35.4
CARHR252810 Cardamine hirsuta HOM05D009543 ORTHO05D004666 5.0e-07 58.2 112 38.4
Sp6g04195 Schrenkiella parvula HOM05D009543 ORTHO05D004666 5.0e-07 58.2 114 38.6
Medtr3g463740 Medicago truncatula HOM05D005226 ORTHO05D004666 6.5e-07 57.8 62 46.8
MBI18_g02740_MAGBIO Magnolia biondii HOM05D005226 ORTHO05D004666 8.5e-07 57.4 65 46.2
PGSC0003DMG400016491 Solanum tuberosum HOM05D005226 ORTHO05D004666 8.5e-07 57.4 89 34.8
ATR0752G088 Amborella trichopoda HOM05D005226 ORTHO05D004666 1.1e-06 57.0 88 42.0
AT4G04745 Arabidopsis thaliana HOM05D009543 ORTHO05D004666 1.9e-06 56.2 72 43.1
Nitab4.5_0000389g0060 Nicotiana tabacum HOM05D005226 ORTHO05D004666 4.2e-06 55.1 93 34.4
AL6G48230 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 5.5e-06 54.7 116 34.5
MELO3C002462.2 Cucumis melo HOM05D005226 ORTHO05D004666 7.2e-06 54.3 89 34.8
Rhsim02G0109000 Rhododendron simsii HOM05D005226 ORTHO05D004666 9.4e-06 53.9 90 36.7


User provided reference genes

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