Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung04800 Brassica carinata HOM05D000066 ORTHO05D014525 2.9e-38 161.4 81 100.0
BcaC05g25027 Brassica carinata HOM05D000066 ORTHO05D000614 3.2e-24 114.8 63 90.5
C05p09720 Brassica napus HOM05D000066 ORTHO05D000055 3.2e-24 114.8 63 90.5
BolC5t29713H Brassica oleracea HOM05D000066 ORTHO05D000055 3.2e-24 114.8 63 90.5
A06p08140 Brassica napus HOM05D000066 ORTHO05D000055 2.5e-21 105.1 63 84.1
BraA06t24014Z Brassica rapa HOM05D000066 ORTHO05D000055 2.5e-21 105.1 63 84.1
Sp1g10160 Schrenkiella parvula HOM05D000066 ORTHO05D000055 7.3e-21 103.6 63 77.8
BcaB08g37400 Brassica carinata HOM05D000066 ORTHO05D000055 2.3e-19 98.6 61 77.0
AT1G11545 Arabidopsis thaliana HOM05D000066 ORTHO05D000055 4.0e-19 97.8 61 73.8
Thhalv10008296m.g Eutrema salsugineum HOM05D000066 ORTHO05D000055 5.2e-19 97.4 61 75.4
AL1G22650 Arabidopsis lyrata HOM05D000066 ORTHO05D000055 8.9e-19 96.7 62 77.4
CARHR011830 Cardamine hirsuta HOM05D000066 ORTHO05D000055 8.9e-19 96.7 57 82.5
Aa31LG1G3200 Aethionema arabicum HOM05D000066 ORTHO05D000055 1.3e-17 92.8 58 79.3
Carub.0001s1116 Capsella rubella HOM05D000066 ORTHO05D000055 1.7e-14 82.4 61 67.2
Lj5g0005759 Lotus japonicus HOM05D000066 ORTHO05D000055 5.6e-13 77.4 62 67.7
THA.LOC104818889 Tarenaya hassleriana HOM05D000066 ORTHO05D000055 2.8e-12 75.1 61 63.9
RcHm_v2.0_Chr5g0003921 Rosa chinensis HOM05D000066 ORTHO05D000055 3.1e-11 71.6 68 58.8
TWI38G1095 Tripterygium wilfordii HOM05D000066 ORTHO05D000055 6.8e-11 70.5 63 61.9
Ca_10977_v3 Cicer arietinum L. HOM05D000066 ORTHO05D000055 1.2e-10 69.7 67 53.7
HanXRQChr01g0003671 Helianthus annuus HOM05D000066 ORTHO05D000055 1.2e-10 69.7 66 59.1
Potri.004G021000 Populus trichocarpa HOM05D000066 ORTHO05D000055 1.2e-10 69.7 58 63.8
TPR.G5465 Trifolium pratense HOM05D000066 ORTHO05D000055 1.2e-10 69.7 68 52.9
CSS0021410 Camellia sinensis var. sinensis HOM05D000066 ORTHO05D000055 1.5e-10 69.3 65 53.8
ECA248G2898 Erigeron canadensis HOM05D000066 ORTHO05D000055 2.0e-10 68.9 55 60.0
Medtr1g105495 Medicago truncatula HOM05D000066 ORTHO05D000055 2.0e-10 68.9 60 58.3
TPR.G13581 Trifolium pratense HOM05D000066 ORTHO05D011769 2.0e-10 68.9 66 54.5
CANSAT56G2585 Cannabis sativa HOM05D000066 ORTHO05D000055 2.6e-10 68.6 61 57.4
Hma1.2p1_3365F.1_g335600 Hydrangea macrophylla HOM05D000066 ORTHO05D000055 2.6e-10 68.6 66 53.0
DCAR_024936 Daucus carota HOM05D000066 ORTHO05D000055 3.4e-10 68.2 63 60.3
Sabra04G0011600 Salix brachista HOM05D000066 ORTHO05D000055 3.4e-10 68.2 57 63.2
Glyma.10G251700 Glycine max HOM05D000066 ORTHO05D000055 5.8e-10 67.4 68 52.9
Lsat_1_v5_gn_1_127501 Lactuca sativa HOM05D000066 ORTHO05D000055 7.5e-10 67.0 68 55.9
Lj1A1225G78 Lonicera japonica HOM05D000066 ORTHO05D000055 7.5e-10 67.0 56 62.5
Phvul.007G052800 Phaseolus vulgaris HOM05D000066 ORTHO05D000055 7.5e-10 67.0 69 55.1
Dinv17828 Davidia involucrata HOM05D000066 ORTHO05D000055 9.9e-10 66.6 65 53.8
VMungo0720G2757 Vigna mungo HOM05D000066 ORTHO05D000055 9.9e-10 66.6 66 51.5
Ciclev10015776m.g Citrus clementina HOM05D000066 ORTHO05D000055 1.3e-09 66.2 64 57.8
Cfa000269 Carpinus fangiana HOM05D000066 ORTHO05D000055 2.2e-09 65.5 60 60.0
Haze_06745 Corylus avellana HOM05D000066 ORTHO05D000055 2.2e-09 65.5 65 53.8
FAN21G1398 Fragaria x ananassa HOM05D000066 ORTHO05D000055 2.2e-09 65.5 68 54.4
FAN25G1666 Fragaria x ananassa HOM05D000066 ORTHO05D000055 2.2e-09 65.5 68 54.4
CiPaw.09G087700 Carya illinoinensis HOM05D000066 ORTHO05D000055 3.7e-09 64.7 53 62.3
Cpa.g.sc198.12 Carica papaya HOM05D000066 ORTHO05D000055 6.4e-09 63.9 57 54.4
Duzib160G0732 Durio zibethinus HOM05D000066 ORTHO05D000055 6.4e-09 63.9 65 52.3
MD00G1180100 Malus domestica HOM05D000066 ORTHO05D000055 6.4e-09 63.9 50 64.0
Gorai.011G016500 Gossypium raimondii HOM05D000066 ORTHO05D000055 8.3e-09 63.5 66 54.5
Glyma.20G141800 Glycine max HOM05D000066 ORTHO05D000055 1.1e-08 63.2 42 69.0
Gohir.D10G014900 Gossypium hirsutum HOM05D000066 ORTHO05D000055 1.4e-08 62.8 66 50.0
Gohir.D06G151900 Gossypium hirsutum HOM05D000066 ORTHO05D000055 1.9e-08 62.4 55 60.0
MD10G1315100 Malus domestica HOM05D000066 ORTHO05D000055 1.9e-08 62.4 64 53.1
arahy.Tifrunner.gnm1.ann1.BT8HPN Arachis hypogaea HOM05D000066 ORTHO05D000055 3.2e-08 61.6 63 49.2
arahy.Tifrunner.gnm1.ann1.GX4GBD Arachis hypogaea HOM05D000066 ORTHO05D000055 3.2e-08 61.6 63 49.2
FvH4_3g02630 Fragaria vesca HOM05D000066 ORTHO05D000055 3.2e-08 61.6 68 51.5
Manes.17G035800 Manihot esculenta HOM05D000066 ORTHO05D014525 4.1e-08 61.2 63 55.6
Gohir.A06G145900 Gossypium hirsutum HOM05D000066 ORTHO05D000055 5.4e-08 60.8 55 58.2
Gorai.010G177300 Gossypium raimondii HOM05D000066 ORTHO05D000055 5.4e-08 60.8 55 58.2
Nn1g03623 Nelumbo nucifera HOM05D000066 ORTHO05D000055 7.1e-08 60.5 63 46.0
Gohir.A10G014900 Gossypium hirsutum HOM05D000066 ORTHO05D000055 9.2e-08 60.1 54 57.4
Thecc.06G214700 Theobroma cacao HOM05D000066 ORTHO05D000055 9.2e-08 60.1 65 49.2
COL.COLO4_31735 Corchorus olitorius HOM05D000066 ORTHO05D000055 2.1e-07 58.9 49 53.1
TAR626G0521 Trochodendron aralioides HOM05D000066 ORTHO05D000055 2.1e-07 58.9 60 51.7
Atru.chr10.2150 Acer truncatum HOM05D000066 ORTHO05D000055 2.7e-07 58.5 52 57.7
PGR004G2882 Punica granatum HOM05D000066 ORTHO05D000055 2.7e-07 58.5 42 59.5
Aqoxy1G03673 Aquilegia oxysepala HOM05D000066 ORTHO05D000055 3.5e-07 58.2 51 56.9
Manes.16G011700 Manihot esculenta HOM05D000066 ORTHO05D000055 3.5e-07 58.2 47 57.4
QL05p074923 Quercus lobata HOM05D000066 ORTHO05D000055 4.6e-07 57.8 54 55.6
QL93p0073_0458 Quercus lobata HOM05D000066 ORTHO05D000055 4.6e-07 57.8 54 55.6
TAR629G1818 Trochodendron aralioides HOM05D000066 ORTHO05D000055 4.6e-07 57.8 33 72.7
Duzib235G0840 Durio zibethinus HOM05D000066 ORTHO05D000055 6.0e-07 57.4 65 50.8
GSVIVG01012635001 Vitis vinifera HOM05D000066 ORTHO05D000055 7.8e-07 57.0 62 48.4
CDE05G3618 Ceratophyllum demersum HOM05D000066 ORTHO05D000055 1.0e-06 56.6 59 49.2
Lalb_Chr16g0376361 Lupinus albus HOM05D000066 ORTHO05D000055 1.0e-06 56.6 53 50.9
Sc17g0007090 Simmondsia chinensis HOM05D000066 ORTHO05D000055 1.3e-06 56.2 33 72.7
Hund23505 Selenicereus undatus HOM05D000066 ORTHO05D000055 3.9e-06 54.7 54 53.7
ATR0697G251 Amborella trichopoda HOM05D000066 ORTHO05D000055 5.1e-06 54.3 42 54.8
Eucgr.D01294 Eucalyptus grandis HOM05D000066 ORTHO05D000055 6.6e-06 53.9 33 69.7


User provided reference genes

Program Settings