Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung04659 Brassica carinata HOM05D002825 ORTHO05D003824 3.1e-78 295.0 146 100.0
AL7G38410 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 4.1e-30 135.2 119 63.9
Carub.0007s2495 Capsella rubella HOM05D002825 ORTHO05D003824 1.1e-27 127.1 125 61.6
BolC1t04813H Brassica oleracea HOM05D002825 ORTHO05D003824 4.4e-24 115.2 121 57.9
BolC7t45363H Brassica oleracea HOM05D002825 ORTHO05D003824 5.9e-21 104.8 88 61.4
AL4G44550 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 1.8e-14 83.2 122 40.2
AL5G43830 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 7.0e-14 81.3 107 41.1
C09p31390 Brassica napus HOM05D002825 ORTHO05D003824 7.7e-13 77.8 91 42.9
BcaC08g45154 Brassica carinata HOM05D002825 ORTHO05D003824 1.3e-12 77.0 95 41.1
C06p27760 Brassica napus HOM05D002825 ORTHO05D003824 1.7e-12 76.6 95 41.1
BolC6t37944H Brassica oleracea HOM05D002825 ORTHO05D003824 1.7e-12 76.6 95 41.1
BolC9t55997H Brassica oleracea HOM05D002825 ORTHO05D003824 1.7e-12 76.6 95 41.1
AL5G43650 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 2.9e-12 75.9 100 42.0
AL5G29610 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 3.8e-12 75.5 100 42.0
AL5G44790 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 5.0e-12 75.1 105 40.0
AL5G43690 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 1.2e-10 70.5 85 45.9
BcaC01g05126 Brassica carinata HOM05D002825 ORTHO05D003824 1.6e-10 70.1 106 41.5
Peaxi162Scf00011g01628 Petunia axillaris HOM05D002825 ORTHO05D003824 2.7e-10 69.3 106 44.3
PGSC0003DMG400024905 Solanum tuberosum HOM05D002825 ORTHO05D003824 2.7e-10 69.3 100 47.0
Thhalv10023497m.g Eutrema salsugineum HOM05D002825 ORTHO05D003824 3.6e-10 68.9 107 44.9
Carub.0005s2842 Capsella rubella HOM05D002825 ORTHO05D011549 4.7e-10 68.6 116 40.5
Solyc01g103160.3 Solanum lycopersicum HOM05D002825 ORTHO05D003824 6.1e-10 68.2 100 46.0
AL5G43680 Arabidopsis lyrata HOM05D002825 ORTHO05D011549 8.0e-10 67.8 101 44.6
CAN.G855.39 Capsicum annuum HOM05D002825 ORTHO05D003824 8.0e-10 67.8 106 43.4
Sopen01g045570 Solanum pennellii HOM05D002825 ORTHO05D003824 8.0e-10 67.8 100 45.0
Nitab4.5_0001057g0030 Nicotiana tabacum HOM05D002825 ORTHO05D003824 1.0e-09 67.4 104 44.2
AL5G43820 Arabidopsis lyrata HOM05D002825 ORTHO05D011549 1.4e-09 67.0 98 42.9
EL10Ac6g14013 Beta vulgaris HOM05D002825 ORTHO05D003824 1.4e-09 67.0 118 42.4
Nitab4.5_0001129g0060 Nicotiana tabacum HOM05D002825 ORTHO05D003824 1.4e-09 67.0 100 46.0
Hund15406 Selenicereus undatus HOM05D002825 ORTHO05D003824 1.8e-09 66.6 99 44.4
AL4G45290 Arabidopsis lyrata HOM05D013471 ORTHO05D015349 2.3e-09 66.2 95 40.0
AT3G60980 Arabidopsis thaliana HOM05D002825 ORTHO05D003824 3.0e-09 65.9 105 37.1
MD15G1441500 Malus domestica HOM05D002825 ORTHO05D003824 3.0e-09 65.9 100 43.0
Carub.0201s0002 Capsella rubella HOM05D002825 ORTHO05D011549 4.0e-09 65.5 111 40.5
MD08G1246600 Malus domestica HOM05D002825 ORTHO05D003824 4.0e-09 65.5 100 43.0
AL5G44780 Arabidopsis lyrata HOM05D002825 ORTHO05D011549 5.2e-09 65.1 100 44.0
Carub.0004s2842 Capsella rubella HOM05D002825 ORTHO05D011549 5.2e-09 65.1 107 43.0
Medtr8g102650 Medicago truncatula HOM05D002825 ORTHO05D003824 5.2e-09 65.1 99 44.4
Cpa.g.sc113.4 Carica papaya HOM05D002825 ORTHO05D003824 6.7e-09 64.7 100 45.0
Aqoxy6G00055 Aquilegia oxysepala HOM05D002825 ORTHO05D003824 8.8e-09 64.3 107 41.1
AT3G60960 Arabidopsis thaliana HOM05D002825 ORTHO05D011549 8.8e-09 64.3 100 43.0
CiPaw.05G002300 Carya illinoinensis HOM05D002825 ORTHO05D003824 8.8e-09 64.3 100 43.0
Sabra01G0172800 Salix brachista HOM05D002825 ORTHO05D003824 8.8e-09 64.3 107 43.0
Ah.11g046920 Amaranthus hybridus HOM05D002825 ORTHO05D003824 1.2e-08 63.9 107 43.0
Ciclev10000271m.g Citrus clementina HOM05D002825 ORTHO05D003824 1.2e-08 63.9 104 43.3
Sed0018539 Sechium edule HOM05D002825 ORTHO05D003824 1.2e-08 63.9 100 42.0
AL5G44690 Arabidopsis lyrata HOM05D002825 ORTHO05D011549 1.5e-08 63.5 100 42.0
FAN04G1220 Fragaria x ananassa HOM05D002825 ORTHO05D003824 1.5e-08 63.5 100 43.0
FAN18G3010 Fragaria x ananassa HOM05D002825 ORTHO05D003824 1.5e-08 63.5 100 43.0
PGR142G0082 Punica granatum HOM05D002825 ORTHO05D003824 1.5e-08 63.5 100 42.0
RcHm_v2.0_Chr7g0220071 Rosa chinensis HOM05D002825 ORTHO05D003824 1.5e-08 63.5 100 43.0
Psat7g131880 Pisum sativum HOM05D002825 ORTHO05D003824 2.0e-08 63.2 97 43.3
BcaC07g38540 Brassica carinata HOM05D002825 ORTHO05D003824 2.6e-08 62.8 118 39.0
C08p13530 Brassica napus HOM05D002825 ORTHO05D003824 2.6e-08 62.8 118 39.0
BolC8t48989H Brassica oleracea HOM05D002825 ORTHO05D003824 2.6e-08 62.8 118 39.0
Ca_17359_v3 Cicer arietinum L. HOM05D002825 ORTHO05D003824 2.6e-08 62.8 99 43.4
Lalb_Chr18g0061131 Lupinus albus HOM05D002825 ORTHO05D003824 2.6e-08 62.8 99 42.4
CANSAT80G1108 Cannabis sativa HOM05D002825 ORTHO05D003824 4.4e-08 62.0 100 42.0
QL02p102471 Quercus lobata HOM05D002825 ORTHO05D003824 4.4e-08 62.0 94 44.7
QL02p103093 Quercus lobata HOM05D002825 ORTHO05D003824 4.4e-08 62.0 94 44.7
C06p27800 Brassica napus HOM05D000647 ORTHO05D011549 5.7e-08 61.6 101 40.6
BolC6t37947H Brassica oleracea HOM05D000647 ORTHO05D011549 5.7e-08 61.6 101 40.6
FvH4_5g27880 Fragaria vesca HOM05D002825 ORTHO05D003824 5.7e-08 61.6 100 42.0
Potri.004G227800 Populus trichocarpa HOM05D002825 ORTHO05D003824 5.7e-08 61.6 107 42.1
BraA08t35321Z Brassica rapa HOM05D002825 ORTHO05D003824 7.5e-08 61.2 110 40.9
Cfa004457 Carpinus fangiana HOM05D002825 ORTHO05D003824 7.5e-08 61.2 100 41.0
MELO3C021840.2 Cucumis melo HOM05D002825 ORTHO05D003824 7.5e-08 61.2 92 44.6
CsaV3_2G036260 Cucumis sativus L. HOM05D002825 ORTHO05D003824 7.5e-08 61.2 92 44.6
FAN08G2274 Fragaria x ananassa HOM05D002825 ORTHO05D003824 7.5e-08 61.2 100 42.0
Manes.07G028200 Manihot esculenta HOM05D002825 ORTHO05D003824 7.5e-08 61.2 107 39.3
Atru.chr6.351 Acer truncatum HOM05D002825 ORTHO05D003824 9.7e-08 60.8 101 40.6
Atru.chr6.402 Acer truncatum HOM05D002825 ORTHO05D003824 9.7e-08 60.8 101 40.6
BcaB02g07363 Brassica carinata HOM05D002825 ORTHO05D021407 9.7e-08 60.8 110 40.9
Carub.0201s0001 Capsella rubella HOM05D002825 ORTHO05D003824 9.7e-08 60.8 95 38.9
Eucgr.I02789 Eucalyptus grandis HOM05D002825 ORTHO05D003824 9.7e-08 60.8 100 41.0
TWI63G1692 Tripterygium wilfordii HOM05D002825 ORTHO05D003824 9.7e-08 60.8 84 47.6
TAR376G0418 Trochodendron aralioides HOM05D002825 ORTHO05D003824 1.3e-07 60.5 83 47.0
Carub.0005s2723 Capsella rubella HOM05D002825 ORTHO05D023647 1.7e-07 60.1 114 36.8
ClCG10G007350 Citrullus lanatus HOM05D002825 ORTHO05D003824 1.7e-07 60.1 92 44.6
Haze_10006 Corylus avellana HOM05D002825 ORTHO05D003824 1.7e-07 60.1 100 41.0
Sc06g0000730 Simmondsia chinensis HOM05D002825 ORTHO05D003824 1.7e-07 60.1 97 43.3
BcaC02g12825 Brassica carinata HOM05D013471 ORTHO05D015349 2.2e-07 59.7 101 35.6
BcaC04g21472 Brassica carinata HOM05D002825 ORTHO05D003824 2.2e-07 59.7 74 40.5
BcaC06g33535 Brassica carinata HOM05D002825 ORTHO05D003824 2.2e-07 59.7 88 40.9
Glyma.16G001000 Glycine max HOM05D002825 ORTHO05D003824 2.2e-07 59.7 95 42.1
HPP92_001276 Vanilla planifolia HOM05D002825 ORTHO05D003824 2.2e-07 59.7 92 41.3
Atru.chr13.1188 Acer truncatum HOM05D002825 ORTHO05D003824 2.8e-07 59.3 101 39.6
C04p01000 Brassica napus HOM05D013471 ORTHO05D015349 2.8e-07 59.3 110 34.5
Glyma.12G164700 Glycine max HOM05D002825 ORTHO05D003824 2.8e-07 59.3 99 41.4
TAR628G0533 Trochodendron aralioides HOM05D002825 ORTHO05D003824 3.7e-07 58.9 82 46.3
C05p08380 Brassica napus HOM05D002825 ORTHO05D003824 4.8e-07 58.5 98 39.8
BolC5t29589H Brassica oleracea HOM05D002825 ORTHO05D003824 4.8e-07 58.5 98 39.8
Prupe.1G583600 Prunus persica HOM05D002825 ORTHO05D003824 4.8e-07 58.5 98 39.8
C04p01010 Brassica napus HOM05D002825 ORTHO05D011549 6.3e-07 58.2 113 39.8
PSO339G5268 Papaver somniferum HOM05D002825 ORTHO05D003824 6.3e-07 58.2 116 37.9
AL4G44540 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 8.2e-07 57.8 87 40.2
Dinv29670 Davidia involucrata HOM05D002825 ORTHO05D003824 8.2e-07 57.8 92 41.3
Gorai.012G012400 Gossypium raimondii HOM05D002825 ORTHO05D003824 8.2e-07 57.8 100 40.0
Lj6g0026509 Lotus japonicus HOM05D002825 ORTHO05D003824 8.2e-07 57.8 108 38.9
BcaC04g21473 Brassica carinata HOM05D002825 ORTHO05D021407 1.1e-06 57.4 101 38.6
A06p06900 Brassica napus HOM05D002825 ORTHO05D003824 1.1e-06 57.4 94 42.6
C08p49080 Brassica napus HOM05D002825 ORTHO05D003824 1.1e-06 57.4 94 39.4
C09p31380 Brassica napus HOM05D002825 ORTHO05D021407 1.1e-06 57.4 101 38.6
BraA06t23906Z Brassica rapa HOM05D002825 ORTHO05D003824 1.1e-06 57.4 94 42.6
ECA236G4782 Erigeron canadensis HOM05D002825 ORTHO05D003824 1.1e-06 57.4 91 41.8
Phvul.006G221100 Phaseolus vulgaris HOM05D002825 ORTHO05D003824 1.1e-06 57.4 99 41.4
Thecc.10G188300 Theobroma cacao HOM05D002825 ORTHO05D003824 1.1e-06 57.4 100 40.0
VMungo0540G0272 Vigna mungo HOM05D002825 ORTHO05D003824 1.1e-06 57.4 99 41.4
BcaB02g09550 Brassica carinata HOM05D013471 ORTHO05D015349 1.4e-06 57.0 120 34.2
BcaC02g12596 Brassica carinata HOM05D013471 ORTHO05D015349 1.4e-06 57.0 78 38.5
A09p65140 Brassica napus HOM05D002825 ORTHO05D003824 1.4e-06 57.0 110 38.2
BolC4t21715H Brassica oleracea HOM05D013471 ORTHO05D015349 1.4e-06 57.0 78 38.5
BraA09t41857Z Brassica rapa HOM05D002825 ORTHO05D003824 1.4e-06 57.0 110 38.2
MBI16_g21730_MAGBIO Magnolia biondii HOM05D002825 ORTHO05D003824 1.4e-06 57.0 83 47.0
BcaB08g37339 Brassica carinata HOM05D002825 ORTHO05D003824 1.8e-06 56.6 110 39.1
BcaC07g41827 Brassica carinata HOM05D002825 ORTHO05D003824 1.8e-06 56.6 110 38.2
CARHR010370 Cardamine hirsuta HOM05D002825 ORTHO05D003824 1.8e-06 56.6 100 39.0
COL.COLO4_19503 Corchorus olitorius HOM05D002825 ORTHO05D003824 1.8e-06 56.6 100 40.0
THA.LOC104823676 Tarenaya hassleriana HOM05D002825 ORTHO05D003824 1.8e-06 56.6 83 43.4
MSTRG.5190 Avicennia marina HOM05D002825 ORTHO05D003824 2.4e-06 56.2 103 39.8
A05p00830 Brassica napus HOM05D013471 ORTHO05D015349 2.4e-06 56.2 78 38.5
BraA05t19086Z Brassica rapa HOM05D013471 ORTHO05D015349 2.4e-06 56.2 78 38.5
AL3G34220 Arabidopsis lyrata HOM05D002825 ORTHO05D011549 3.1e-06 55.8 102 40.2
Migut.N00859 Erythranthe guttata HOM05D002825 ORTHO05D003824 3.1e-06 55.8 105 37.1
Hma1.2p1_0052F.1_g029920 Hydrangea macrophylla HOM05D002825 ORTHO05D003824 3.1e-06 55.8 82 45.1
A08p34080 Brassica napus HOM05D002825 ORTHO05D003824 4.1e-06 55.5 110 38.2
Cc02_g23470 Coffea canephora HOM05D002825 ORTHO05D003824 4.1e-06 55.5 82 45.1
Duzib128G0132 Durio zibethinus HOM05D002825 ORTHO05D003824 4.1e-06 55.5 97 40.2
Medtr7g069270 Medicago truncatula HOM05D002825 ORTHO05D003824 4.1e-06 55.5 82 42.7
Oeu000151.1 Olea europaea HOM05D002825 ORTHO05D003824 4.1e-06 55.5 110 38.2
BcaC05g24908 Brassica carinata HOM05D002825 ORTHO05D003824 5.3e-06 55.1 92 39.1
Carub.0006s2574 Capsella rubella HOM05D002825 ORTHO05D003824 5.3e-06 55.1 83 41.0
Rhsim05G0174700 Rhododendron simsii HOM05D002825 ORTHO05D003824 5.3e-06 55.1 70 45.7
Aa31LG1G4670 Aethionema arabicum HOM05D002825 ORTHO05D003824 7.0e-06 54.7 98 38.8
Carub.0001s0966 Capsella rubella HOM05D002825 ORTHO05D003824 7.0e-06 54.7 83 42.2
CARHR140100 Cardamine hirsuta HOM05D002825 ORTHO05D003824 7.0e-06 54.7 115 37.4
THA.LOC104823675 Tarenaya hassleriana HOM05D002825 ORTHO05D003824 7.0e-06 54.7 87 41.4
GSVIVG01023159001 Vitis vinifera HOM05D002825 ORTHO05D003824 9.1e-06 54.3 83 44.6


User provided reference genes

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