Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung04656 Brassica carinata HOM05D006150 ORTHO05D007745 4.6e-177 624.4 303 100.0
BraA03t14117Z Brassica rapa HOM05D006150 ORTHO05D007745 3.2e-170 601.7 303 95.4
C07p48520 Brassica napus HOM05D006150 ORTHO05D007745 1.7e-168 595.9 303 94.7
BolC7t45360H Brassica oleracea HOM05D006150 ORTHO05D007745 1.7e-168 595.9 303 94.7
A03p50280 Brassica napus HOM05D006150 ORTHO05D007745 1.5e-167 592.8 303 94.1
C07p48460 Brassica napus HOM05D006150 ORTHO05D007745 4.8e-166 587.8 303 94.4
BcaC06g33538 Brassica carinata HOM05D006150 ORTHO05D007745 3.1e-165 585.1 304 93.8
Sp7g17140 Schrenkiella parvula HOM05D006150 ORTHO05D007745 1.9e-162 575.9 303 91.7
BraA01t01953Z Brassica rapa HOM05D006150 ORTHO05D007745 4.2e-162 574.7 304 92.4
BcaNung00130 Brassica carinata HOM05D006150 ORTHO05D007745 7.1e-162 573.9 304 92.8
CARHR223610 Cardamine hirsuta HOM05D006150 ORTHO05D007745 7.1e-162 573.9 303 90.4
C07p48390 Brassica napus HOM05D006150 ORTHO05D007745 1.2e-161 573.2 303 93.1
AL7G37660 Arabidopsis lyrata HOM05D006150 ORTHO05D007745 2.7e-161 572.0 303 91.1
BolC1t02493H Brassica oleracea HOM05D006150 ORTHO05D007745 4.6e-161 571.2 303 92.1
AT4G17050 Arabidopsis thaliana HOM05D006150 ORTHO05D007745 1.3e-160 569.7 303 90.8
Carub.0007s2437 Capsella rubella HOM05D006150 ORTHO05D007745 2.5e-159 565.5 303 89.8
A01p20260 Brassica napus HOM05D006150 ORTHO05D007745 1.2e-153 546.6 291 92.4
THA.LOC104807929 Tarenaya hassleriana HOM05D006150 ORTHO05D007745 9.3e-146 520.4 302 82.1
Thhalv10026866m.g Eutrema salsugineum HOM05D006150 ORTHO05D007745 6.7e-144 514.2 316 83.5
BcaC09g50439 Brassica carinata HOM05D006150 ORTHO05D007745 1.8e-141 506.1 304 84.2
C01p25410 Brassica napus HOM05D006150 ORTHO05D007745 1.8e-141 506.1 304 84.2
Gohir.A12G212700 Gossypium hirsutum HOM05D006150 ORTHO05D007745 4.1e-141 505.0 293 82.6
Gorai.008G230800 Gossypium raimondii HOM05D006150 ORTHO05D007745 1.2e-140 503.4 293 81.9
Gohir.D12G215200 Gossypium hirsutum HOM05D006150 ORTHO05D007745 1.0e-139 500.4 293 81.2
COL.COLO4_07285 Corchorus olitorius HOM05D006150 ORTHO05D007745 3.8e-139 498.4 294 80.6
Thecc.03G240100 Theobroma cacao HOM05D006150 ORTHO05D007745 3.8e-139 498.4 293 81.2
Duzib084G0008 Durio zibethinus HOM05D006150 ORTHO05D007745 4.2e-138 495.0 293 79.9
Manes.01G089000 Manihot esculenta HOM05D006150 ORTHO05D007745 7.9e-137 490.7 303 77.6
Sopen08g026350 Solanum pennellii HOM05D006150 ORTHO05D007745 1.1e-135 486.9 297 76.8
TWI60G0542 Tripterygium wilfordii HOM05D006150 ORTHO05D007745 1.5e-135 486.5 279 81.0
CANSAT21G0710 Cannabis sativa HOM05D006150 ORTHO05D007745 2.5e-135 485.7 280 80.7
Aa31LG2G13130 Aethionema arabicum HOM05D006150 ORTHO05D007745 4.3e-135 485.0 319 75.9
CAN.G572.11 Capsicum annuum HOM05D006150 ORTHO05D007745 5.7e-135 484.6 305 75.1
Hma1.2p1_0570F.1_g180430 Hydrangea macrophylla HOM05D006150 ORTHO05D007745 5.7e-135 484.6 279 79.6
Rhsim07G0136400 Rhododendron simsii HOM05D006150 ORTHO05D007745 5.7e-135 484.6 306 74.8
PGSC0003DMG400026243 Solanum tuberosum HOM05D006150 ORTHO05D007745 7.4e-135 484.2 297 76.1
Sed0022790 Sechium edule HOM05D006150 ORTHO05D007745 1.6e-134 483.0 298 75.8
TAR636G1440 Trochodendron aralioides HOM05D006150 ORTHO05D007745 1.6e-134 483.0 306 74.8
RcHm_v2.0_Chr7g0205681 Rosa chinensis HOM05D006150 ORTHO05D007745 8.2e-134 480.7 292 78.8
ClCG10G005070 Citrullus lanatus HOM05D006150 ORTHO05D007745 1.1e-133 480.3 298 75.5
Ciclev10021365m.g Citrus clementina HOM05D006150 ORTHO05D007745 1.4e-133 479.9 280 80.0
Solyc08g077840.3 Solanum lycopersicum HOM05D006150 ORTHO05D007745 1.8e-133 479.6 297 75.8
Lj8A277T42 Lonicera japonica HOM05D006150 ORTHO05D007745 2.4e-133 479.2 284 77.1
PSO675G6476 Papaver somniferum HOM05D006150 ORTHO05D007745 3.1e-133 478.8 303 75.6
Potri.003G083600 Populus trichocarpa HOM05D006150 ORTHO05D007745 4.1e-133 478.4 298 76.8
CsaV3_3G004750 Cucumis sativus L. HOM05D006150 ORTHO05D007745 6.9e-133 477.6 298 75.8
CSS0019555 Camellia sinensis var. sinensis HOM05D006150 ORTHO05D007745 9.1e-133 477.2 295 76.9
PSO732G0290 Papaver somniferum HOM05D006150 ORTHO05D007745 9.1e-133 477.2 295 77.6
MD04G1055500 Malus domestica HOM05D006150 ORTHO05D007745 3.4e-132 475.3 296 75.7
Atru.chr9.1206 Acer truncatum HOM05D006150 ORTHO05D007745 1.0e-131 473.8 286 78.3
MBI04_g13858_MAGBIO Magnolia biondii HOM05D006150 ORTHO05D007745 1.0e-131 473.8 278 79.5
Ah.12g053980 Amaranthus hybridus HOM05D006150 ORTHO05D007745 1.3e-131 473.4 298 73.8
MSTRG.6640 Avicennia marina HOM05D006150 ORTHO05D007745 2.2e-131 472.6 296 75.3
Lalb_Chr09g0329771 Lupinus albus HOM05D006150 ORTHO05D007745 2.2e-131 472.6 298 75.8
CiPaw.11G072300 Carya illinoinensis HOM05D006150 ORTHO05D007745 2.9e-131 472.2 297 74.4
EL10Ac5g12270 Beta vulgaris HOM05D006150 ORTHO05D007745 3.8e-131 471.9 294 74.8
Eucgr.D02133 Eucalyptus grandis HOM05D006150 ORTHO05D007745 3.8e-131 471.9 294 77.6
Cfa012327 Carpinus fangiana HOM05D006150 ORTHO05D007745 8.5e-131 470.7 296 76.4
FAN04G1813 Fragaria x ananassa HOM05D006150 ORTHO05D007745 8.5e-131 470.7 297 76.8
FvH4_5g20400 Fragaria vesca HOM05D006150 ORTHO05D007745 7.2e-130 467.6 290 77.2
Cc08_g11330 Coffea canephora HOM05D006150 ORTHO05D007745 9.4e-130 467.2 295 73.9
ECA234G2169 Erigeron canadensis HOM05D006150 ORTHO05D007745 2.7e-129 465.7 303 72.9
SalBow7G3619 Salvia bowleyana HOM05D006150 ORTHO05D007745 4.6e-129 464.9 285 75.4
DCAR_008330 Daucus carota HOM05D006150 ORTHO05D007745 6.1e-129 464.5 296 74.7
arahy.Tifrunner.gnm1.ann1.IPM3U6 Arachis hypogaea HOM05D006150 ORTHO05D007745 1.4e-128 463.4 298 73.2
FAN08G0760 Fragaria x ananassa HOM05D006150 ORTHO05D007745 1.4e-128 463.4 283 78.1
Nn6g33757 Nelumbo nucifera HOM05D006150 ORTHO05D007745 1.8e-128 463.0 278 78.4
PGR031G0533 Punica granatum HOM05D006150 ORTHO05D007745 3.0e-128 462.2 260 83.1
Glyma.17G148400 Glycine max HOM05D006150 ORTHO05D007745 1.5e-127 459.9 296 72.6
arahy.Tifrunner.gnm1.ann1.YY6LCE Arachis hypogaea HOM05D006150 ORTHO05D007745 1.7e-126 456.4 298 73.2
Glyma.05G066500 Glycine max HOM05D006150 ORTHO05D007745 2.2e-126 456.1 295 72.5
PSO732G0039 Papaver somniferum HOM05D006150 ORTHO05D007745 3.7e-126 455.3 274 78.1
Haze_08363 Corylus avellana HOM05D006150 ORTHO05D007745 1.1e-125 453.8 321 69.5
CDE12G0966 Ceratophyllum demersum HOM05D006150 ORTHO05D007745 1.8e-125 453.0 295 72.9
Medtr4g099290 Medicago truncatula HOM05D006150 ORTHO05D007745 3.1e-125 452.2 295 71.2
Lj4g0002003 Lotus japonicus HOM05D006150 ORTHO05D007745 5.3e-125 451.4 296 72.3
VMungo0251G1767 Vigna mungo HOM05D006150 ORTHO05D007745 6.9e-125 451.1 296 70.3
HanXRQChr17g0534011 Helianthus annuus HOM05D006150 ORTHO05D007745 1.2e-124 450.3 304 71.1
Nitab4.5_0000500g0240 Nicotiana tabacum HOM05D006150 ORTHO05D007745 1.2e-124 450.3 302 72.2
ATR0665G013 Amborella trichopoda HOM05D006150 ORTHO05D007745 3.4e-124 448.7 301 72.4
Phvul.003G225600 Phaseolus vulgaris HOM05D006150 ORTHO05D007745 3.4e-124 448.7 295 70.8
Nitab4.5_0009451g0030 Nicotiana tabacum HOM05D006150 ORTHO05D007745 4.5e-124 448.4 303 71.3
Ca_22017_v3 Cicer arietinum L. HOM05D006150 ORTHO05D007745 2.9e-123 445.7 296 71.3
unitig_746.g26644 Utricularia gibba HOM05D006150 ORTHO05D007745 8.5e-123 444.1 294 70.1
TPR.G25747 Trifolium pratense HOM05D006150 ORTHO05D007745 5.5e-122 441.4 296 71.3
Aqoxy5G02622 Aquilegia oxysepala HOM05D006150 ORTHO05D007745 1.4e-120 436.8 311 67.8
Os07g0495000 Oryza sativa ssp. japonica HOM05D006150 ORTHO05D007745 3.0e-120 435.6 304 69.7
QL12p008732 Quercus lobata HOM05D006150 ORTHO05D007745 7.4e-119 431.0 407 56.5
Peaxi162Scf00301g00519 Petunia axillaris HOM05D006150 ORTHO05D007745 2.4e-117 426.0 289 70.2
Zm00001eb322060 Zea mays HOM05D006150 ORTHO05D007745 5.3e-117 424.9 278 71.9
HPP92_025744 Vanilla planifolia HOM05D006150 ORTHO05D007745 1.6e-113 413.3 287 69.7
Psat4g076080 Pisum sativum HOM05D006150 ORTHO05D007745 2.6e-111 406.0 274 70.8
SEGI_33649 Sequoiadendron giganteum HOM05D006150 ORTHO05D007745 3.7e-110 402.1 296 67.9
Actinidia02195 Actinidia chinensis HOM05D006150 ORTHO05D007745 6.3e-110 401.4 258 72.9
Dinv28876 Davidia involucrata HOM05D006150 ORTHO05D007745 3.5e-108 395.6 246 76.8
vmacro00832 Vaccinium macrocarpon HOM05D006150 ORTHO05D007745 1.7e-107 393.3 296 66.9
Sc01g0007980 Simmondsia chinensis HOM05D006150 ORTHO05D007745 2.9e-107 392.5 239 76.2
Pp3c9_12580 Physcomitrium patens HOM05D006150 ORTHO05D007745 4.8e-102 375.2 263 69.2
AagrBONN_evm.TU.Sc2ySwM_228.2274 Anthoceros agrestis HOM05D006150 ORTHO05D007745 5.0e-99 365.2 249 70.3
Prupe.5G055300 Prunus persica HOM05D006150 ORTHO05D007745 1.9e-98 363.2 212 82.1
Mapoly0072s0097 Marchantia polymorpha HOM05D006150 ORTHO05D007745 3.6e-97 359.0 318 57.5
Oeu012348.1 Olea europaea HOM05D006150 ORTHO05D007745 1.2e-95 354.0 211 80.6
AUR62007167 Chenopodium quinoa HOM05D006150 ORTHO05D007745 2.7e-92 342.8 202 78.7
AUR62018839 Chenopodium quinoa HOM05D006150 ORTHO05D007745 3.5e-92 342.4 202 77.7
GSVIVG01003685001 Vitis vinifera HOM05D006150 ORTHO05D007745 1.0e-91 340.9 282 62.1
SGA_v2.0_scaffold181G39680 Striga asiatica HOM05D006150 ORTHO05D007745 2.5e-90 336.3 243 70.0
Lsat_1_v5_gn_3_15361 Lactuca sativa HOM05D006150 ORTHO05D007745 1.5e-87 327.0 257 65.8
Actinidia25909 Actinidia chinensis HOM05D006150 ORTHO05D007745 5.6e-74 282.0 294 52.4
MCO07G379 Micromonas commoda HOM05D006150 ORTHO05D007745 3.7e-70 269.2 269 49.8
Potri.001G150800 Populus trichocarpa HOM05D006150 ORTHO05D007745 1.7e-67 260.4 187 67.4
Cre06.g290000 Chlamydomonas reinhardtii HOM05D006150 ORTHO05D007745 2.5e-66 256.5 258 48.8
MD06G1047100 Malus domestica HOM05D006150 ORTHO05D007745 1.1e-64 251.1 270 52.2
MELO3C014174.2 Cucumis melo HOM05D006150 ORTHO05D007745 3.1e-56 223.0 270 49.3
Sabra01G0120800 Salix brachista HOM05D006150 ORTHO05D007745 2.9e-54 216.5 175 61.1
MCO04G282 Micromonas commoda HOM05D006150 ORTHO05D007745 1.1e-53 214.5 262 45.4
Hma1.2p1_0570F.1_g180440 Hydrangea macrophylla HOM05D006150 ORTHO05D007745 1.0e-51 208.0 128 73.4
FAN18G0603 Fragaria x ananassa HOM05D006150 ORTHO05D007745 1.5e-47 194.1 158 64.6
BcaC01g03436 Brassica carinata HOM05D006150 ORTHO05D007745 1.6e-41 174.1 108 77.8
CSS0048254 Camellia sinensis var. sinensis HOM05D006150 ORTHO05D007745 1.8e-40 170.6 97 82.5
Sabra01G0120600 Salix brachista HOM05D006150 ORTHO05D007745 4.9e-38 162.5 162 56.8
PSO717G0125 Papaver somniferum HOM05D006150 ORTHO05D007745 2.3e-35 153.7 93 75.3
Cpa.g.sc98.38 Carica papaya HOM05D006150 ORTHO05D007745 1.2e-31 141.4 81 76.5
CBR_g38093 Chara braunii HOM05D006150 ORTHO05D007745 7.1e-29 132.1 66 83.3
Cpa.g.sc98.35 Carica papaya HOM05D006150 ORTHO05D007745 2.6e-15 87.0 56 71.4
GSVIVG01021810001 Vitis vinifera HOM05D006150 ORTHO05D007745 3.4e-15 86.7 67 62.7
Oeu040463.1 Olea europaea HOM05D001574 ORTHO05D000708 3.1e-08 63.5 57 59.6
Cpa.g.sc3814.1 Carica papaya HOM05D006150 ORTHO05D007745 1.2e-07 61.6 35 71.4
Lsat_1_v5_gn_6_74120 Lactuca sativa HOM05D006150 ORTHO05D233887 1.2e-07 61.6 33 78.8
A06p15030 Brassica napus HOM05D006150 ORTHO05D096911 3.8e-06 56.6 30 83.3
MELO3C000773.2 Cucumis melo HOM05D006150 ORTHO05D007745 5.0e-06 56.2 37 75.7


User provided reference genes

Program Settings