Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung04576 Brassica carinata HOM05D003781 ORTHO05D004299 8.9e-201 703.4 349 100.0
C07p58580 Brassica napus HOM05D003781 ORTHO05D004299 2.4e-182 642.1 350 92.3
BolC7t46313H Brassica oleracea HOM05D003781 ORTHO05D004299 2.1e-181 639.0 351 92.3
BraA03t15109Z Brassica rapa HOM05D003781 ORTHO05D004299 7.9e-181 637.1 351 92.3
A03p60680 Brassica napus HOM05D003781 ORTHO05D004299 1.8e-180 636.0 351 91.7
Thhalv10027115m.g Eutrema salsugineum HOM05D003781 ORTHO05D004299 6.9e-161 570.9 344 83.1
Sp7g29260 Schrenkiella parvula HOM05D003781 ORTHO05D004299 1.4e-156 556.6 345 82.9
AT4G31400 Arabidopsis thaliana HOM05D003781 ORTHO05D004299 7.7e-152 540.8 345 78.3
BraA08t33827Z Brassica rapa HOM05D003781 ORTHO05D004299 7.7e-152 540.8 347 79.3
A08p18640 Brassica napus HOM05D003781 ORTHO05D004299 2.9e-151 538.9 344 79.4
CARHR239280 Cardamine hirsuta HOM05D003781 ORTHO05D004299 3.2e-142 508.8 346 76.3
Carub.0007s0916 Capsella rubella HOM05D003781 ORTHO05D004299 7.5e-139 497.7 343 73.2
Aa31LG2G18950 Aethionema arabicum HOM05D003781 ORTHO05D004299 6.5e-135 484.6 344 72.1
AL7G20660 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 1.6e-133 479.9 301 79.1
C03p88000 Brassica napus HOM05D003781 ORTHO05D004299 8.5e-127 457.6 344 70.1
BcaB03g12691 Brassica carinata HOM05D003781 ORTHO05D004299 4.1e-121 438.7 302 75.5
BolC3t21111H Brassica oleracea HOM05D003781 ORTHO05D004299 1.0e-119 434.1 345 69.0
THA.LOC104809956 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 2.8e-117 426.0 357 63.0
BcaNung01523 Brassica carinata HOM05D003781 ORTHO05D004299 1.1e-113 414.1 300 74.3
BcaC01g01091 Brassica carinata HOM05D003781 ORTHO05D004299 4.1e-105 385.6 301 68.1
Duzib093G1220 Durio zibethinus HOM05D003781 ORTHO05D004299 1.4e-97 360.5 354 55.9
Atru.chr8.1371 Acer truncatum HOM05D003781 ORTHO05D004299 1.7e-95 353.6 356 55.1
Gorai.006G149700 Gossypium raimondii HOM05D003781 ORTHO05D004299 1.7e-95 353.6 356 54.2
Gohir.D09G131000 Gossypium hirsutum HOM05D003781 ORTHO05D004299 6.6e-95 351.7 356 53.9
TWI74G1316 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 3.3e-94 349.4 357 53.8
PGR142G3230 Punica granatum HOM05D003781 ORTHO05D004299 1.6e-93 347.1 367 52.6
Cpa.g.sc10.172 Carica papaya HOM05D003781 ORTHO05D004299 2.1e-93 346.7 357 53.2
Potri.016G070800 Populus trichocarpa HOM05D003781 ORTHO05D004299 6.2e-93 345.1 363 52.6
Thecc.05G103800 Theobroma cacao HOM05D003781 ORTHO05D004299 2.3e-92 343.2 356 54.8
Sabra16G0070900 Salix brachista HOM05D003781 ORTHO05D004299 9.9e-91 337.8 374 51.3
Sabra16G0073100 Salix brachista HOM05D003781 ORTHO05D004299 9.9e-91 337.8 374 51.3
GSVIVG01029568001 Vitis vinifera HOM05D003781 ORTHO05D004299 2.9e-90 336.3 370 48.4
Ciclev10012131m.g Citrus clementina HOM05D003781 ORTHO05D004299 3.8e-90 335.9 356 53.4
GSVIVG01037869001 Vitis vinifera HOM05D003781 ORTHO05D004299 8.4e-90 334.7 371 49.9
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 1.1e-89 334.3 328 55.5
TWI53G0607 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 3.2e-89 332.8 357 51.3
Prupe.7G095100 Prunus persica HOM05D003781 ORTHO05D004299 3.5e-88 329.3 358 51.7
Lj1g0015362 Lotus japonicus HOM05D003781 ORTHO05D004299 7.8e-88 328.2 353 51.8
Haze_20190 Corylus avellana HOM05D003781 ORTHO05D004299 1.0e-87 327.8 358 52.2
QL07p036815 Quercus lobata HOM05D003781 ORTHO05D004299 1.7e-87 327.0 366 51.4
QL04p047257 Quercus lobata HOM05D003781 ORTHO05D004299 3.3e-86 322.8 366 51.1
Dinv31756 Davidia involucrata HOM05D003781 ORTHO05D004299 7.3e-86 321.6 362 51.9
Manes.08G033100 Manihot esculenta HOM05D003781 ORTHO05D004299 2.8e-85 319.7 363 48.8
QL04p046781 Quercus lobata HOM05D003781 ORTHO05D004299 8.1e-85 318.2 361 49.9
Dinv12337 Davidia involucrata HOM05D003781 ORTHO05D004299 1.1e-84 317.8 363 50.7
Medtr0036s0040 Medicago truncatula HOM05D003781 ORTHO05D004299 6.9e-84 315.1 348 51.1
MD12G1039800 Malus domestica HOM05D003781 ORTHO05D004299 1.5e-83 313.9 359 49.3
Haze_19697 Corylus avellana HOM05D003781 ORTHO05D004299 2.6e-83 313.2 350 52.3
CsaV3_3G037920 Cucumis sativus L. HOM05D003781 ORTHO05D004299 4.4e-83 312.4 364 48.9
TAR633G0070 Trochodendron aralioides HOM05D003781 ORTHO05D004299 4.4e-83 312.4 364 50.0
vmacro07475 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 7.6e-83 311.6 369 49.3
Actinidia03891 Actinidia chinensis HOM05D003781 ORTHO05D004299 9.9e-83 311.2 366 49.7
Actinidia04001 Actinidia chinensis HOM05D003781 ORTHO05D004299 9.9e-83 311.2 366 49.7
CiPaw.09G020700 Carya illinoinensis HOM05D003781 ORTHO05D004299 1.3e-82 310.8 368 51.4
Lalb_Chr18g0056351 Lupinus albus HOM05D003781 ORTHO05D004299 1.7e-82 310.5 350 49.1
MD14G1038400 Malus domestica HOM05D003781 ORTHO05D004299 2.2e-82 310.1 361 49.3
MELO3C009536.2 Cucumis melo HOM05D003781 ORTHO05D004299 2.9e-82 309.7 363 48.2
arahy.Tifrunner.gnm1.ann1.GQX3NW Arachis hypogaea HOM05D003781 ORTHO05D004299 1.1e-81 307.8 354 47.7
DCAR_009179 Daucus carota HOM05D003781 ORTHO05D004299 1.4e-81 307.4 353 49.9
Psat5g299360 Pisum sativum HOM05D003781 ORTHO05D004299 1.4e-81 307.4 353 49.9
Ca_03587_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 1.9e-81 307.0 350 50.3
Lsat_1_v5_gn_1_58161 Lactuca sativa HOM05D003781 ORTHO05D004299 2.4e-81 306.6 355 48.7
CAN.G170.93 Capsicum annuum HOM05D003781 ORTHO05D004299 3.2e-81 306.2 357 49.0
VMungo0464G1804 Vigna mungo HOM05D003781 ORTHO05D004299 9.3e-81 304.7 341 47.2
TAR636G1975 Trochodendron aralioides HOM05D003781 ORTHO05D004299 1.2e-80 304.3 365 49.3
Nn2g14295 Nelumbo nucifera HOM05D003781 ORTHO05D004299 2.1e-80 303.5 369 48.0
Nitab4.5_0000020g0070 Nicotiana tabacum HOM05D003781 ORTHO05D004299 3.5e-80 302.8 353 49.0
Sopen01g003140 Solanum pennellii HOM05D003781 ORTHO05D004299 3.5e-80 302.8 355 48.7
SGA_v2.0_scaffold13G06629 Striga asiatica HOM05D003781 ORTHO05D004299 3.5e-80 302.8 346 47.4
Nitab4.5_0001122g0140 Nicotiana tabacum HOM05D003781 ORTHO05D004299 4.6e-80 302.4 353 49.0
arahy.Tifrunner.gnm1.ann1.WYX60D Arachis hypogaea HOM05D003781 ORTHO05D004299 6.0e-80 302.0 356 46.3
Phvul.001G195300 Phaseolus vulgaris HOM05D003781 ORTHO05D004299 1.0e-79 301.2 343 46.6
Peaxi162Scf00586g00012 Petunia axillaris HOM05D003781 ORTHO05D004299 1.3e-79 300.8 356 48.3
Solyc01g007160.4 Solanum lycopersicum HOM05D003781 ORTHO05D004299 1.7e-79 300.4 355 47.6
ECA248G2654 Erigeron canadensis HOM05D003781 ORTHO05D004299 2.3e-79 300.1 368 47.8
PGSC0003DMG400021351 Solanum tuberosum HOM05D003781 ORTHO05D004299 5.1e-79 298.9 355 47.3
AUR62036398 Chenopodium quinoa HOM05D003781 ORTHO05D004299 1.1e-78 297.7 354 48.9
Glyma.19G200100 Glycine max HOM05D003781 ORTHO05D004299 3.3e-78 296.2 341 47.2
Lsat_1_v5_gn_6_113040 Lactuca sativa HOM05D003781 ORTHO05D004299 4.3e-78 295.8 374 45.5
Ca_17838_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 5.6e-78 295.4 355 47.9
Eucgr.K02618 Eucalyptus grandis HOM05D003781 ORTHO05D004299 5.6e-78 295.4 291 55.0
FAN02G2206 Fragaria x ananassa HOM05D003781 ORTHO05D004299 5.6e-78 295.4 361 47.6
HanXRQChr01g0025751 Helianthus annuus HOM05D003781 ORTHO05D004299 7.3e-78 295.0 351 44.2
Glyma.19G199100 Glycine max HOM05D003781 ORTHO05D004299 9.6e-78 294.7 341 47.2
EL10Ac5g12476 Beta vulgaris HOM05D003781 ORTHO05D004299 1.3e-77 294.3 365 47.9
CANSAT01G0129 Cannabis sativa HOM05D003781 ORTHO05D004299 2.1e-77 293.5 368 45.9
Migut.J00706 Erythranthe guttata HOM05D003781 ORTHO05D004299 2.1e-77 293.5 349 45.8
VMungo1383G2961 Vigna mungo HOM05D003781 ORTHO05D004299 1.8e-76 290.4 350 42.3
FvH4_6g20270 Fragaria vesca HOM05D003781 ORTHO05D004299 3.1e-76 289.7 358 46.4
Sopen01g052480 Solanum pennellii HOM05D003781 ORTHO05D004299 3.1e-76 289.7 356 46.1
PGR142G3605 Punica granatum HOM05D003781 ORTHO05D004299 5.3e-76 288.9 352 47.7
AUR62030753 Chenopodium quinoa HOM05D003781 ORTHO05D004299 6.9e-76 288.5 372 46.0
RcHm_v2.0_Chr1g0331051 Rosa chinensis HOM05D003781 ORTHO05D004299 9.0e-76 288.1 361 47.1
FAN14G3039 Fragaria x ananassa HOM05D003781 ORTHO05D004299 1.5e-75 287.3 358 45.8
Oeu034092.2 Olea europaea HOM05D003781 ORTHO05D004299 2.6e-75 286.6 349 47.3
RcHm_v2.0_Chr3g0475861 Rosa chinensis HOM05D003781 ORTHO05D004299 3.4e-75 286.2 364 47.3
Sed0026509 Sechium edule HOM05D003781 ORTHO05D004299 5.8e-75 285.4 352 47.4
Hund10883 Selenicereus undatus HOM05D003781 ORTHO05D004299 5.8e-75 285.4 349 47.0
MSTRG.5897 Avicennia marina HOM05D003781 ORTHO05D004299 1.3e-74 284.3 352 47.4
Cc06_g06510 Coffea canephora HOM05D003781 ORTHO05D004299 1.3e-74 284.3 352 46.0
Aqoxy1G00670 Aquilegia oxysepala HOM05D003781 ORTHO05D004299 2.9e-74 283.1 370 45.1
Medtr2g102470 Medicago truncatula HOM05D003781 ORTHO05D004299 4.9e-74 282.3 349 47.9
Sed0000357 Sechium edule HOM05D003781 ORTHO05D004299 8.4e-74 281.6 270 53.7
PSO541G6247 Papaver somniferum HOM05D003781 ORTHO05D004299 1.9e-73 280.4 360 44.7
Ah.04g152350 Amaranthus hybridus HOM05D003781 ORTHO05D000148 2.4e-73 280.0 357 46.5
Actinidia31110 Actinidia chinensis HOM05D003781 ORTHO05D004299 4.2e-73 279.3 282 52.1
SalBow8G0162 Salvia bowleyana HOM05D003781 ORTHO05D004299 4.2e-73 279.3 349 46.4
CiPaw.10G017000 Carya illinoinensis HOM05D003781 ORTHO05D004299 7.1e-73 278.5 351 47.3
FAN05G1631 Fragaria x ananassa HOM05D003781 ORTHO05D004299 2.1e-72 276.9 391 43.7
FAN05G5379 Fragaria x ananassa HOM05D003781 ORTHO05D004299 2.1e-72 276.9 391 43.7
FAN09G0267 Fragaria x ananassa HOM05D003781 ORTHO05D004299 2.1e-72 276.9 391 43.7
Solyc01g110330.3 Solanum lycopersicum HOM05D003781 ORTHO05D004299 2.1e-72 276.9 347 46.1
Hma1.2p1_0381F.1_g140000 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 3.5e-72 276.2 353 45.3
PSO675G8110 Papaver somniferum HOM05D003781 ORTHO05D004299 3.5e-72 276.2 359 44.3
TPR.G37223 Trifolium pratense HOM05D003781 ORTHO05D004299 3.5e-72 276.2 350 45.7
CSS0048701 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 4.6e-72 275.8 350 45.4
Oeu052621.2 Olea europaea HOM05D003781 ORTHO05D004299 6.0e-72 275.4 267 53.2
THA.LOC104816619 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 6.0e-72 275.4 211 66.8
ClCG10G018370 Citrullus lanatus HOM05D003781 ORTHO05D004299 1.3e-71 274.2 320 49.4
Hma1.2p1_0064F.1_g034690 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 1.9e-70 270.4 331 49.2
HanXRQChr16g0532941 Helianthus annuus HOM05D003781 ORTHO05D004299 3.3e-70 269.6 266 51.9
CDE06G0061 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 5.6e-70 268.9 363 42.4
MBI04_g47396_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 3.1e-68 263.1 380 44.5
Rhsim03G0064900 Rhododendron simsii HOM05D003781 ORTHO05D004299 5.3e-68 262.3 365 46.8
MBI04_g43653_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 1.5e-67 260.8 375 44.5
unitig_26.g10109 Utricularia gibba HOM05D003781 ORTHO05D004299 9.9e-67 258.1 348 44.8
Gohir.A09G134500 Gossypium hirsutum HOM05D003781 ORTHO05D004299 1.1e-65 254.6 358 45.0
Rhsim09G0141200 Rhododendron simsii HOM05D003781 ORTHO05D004299 4.6e-64 249.2 395 40.0
CDE08G1154 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 3.0e-63 246.5 282 46.1
Lj2A35G43 Lonicera japonica HOM05D003781 ORTHO05D004299 1.5e-62 244.2 285 47.4
HPP92_023079 Vanilla planifolia HOM05D003781 ORTHO05D004299 1.5e-62 244.2 358 40.5
ATR0772G111 Amborella trichopoda HOM05D003781 ORTHO05D004299 3.3e-62 243.0 317 43.5
Os04g0498900 Oryza sativa ssp. japonica HOM05D003781 ORTHO05D004299 1.6e-61 240.7 276 49.3
Nitab4.5_0002858g0040 Nicotiana tabacum HOM05D003781 ORTHO05D004299 3.1e-60 236.5 313 47.3
vmacro10320 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 4.9e-58 229.2 233 51.1
RhsimUnG0138100 Rhododendron simsii HOM05D003781 ORTHO05D004299 8.4e-58 228.4 351 40.7
AL1G32760 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 2.1e-56 223.8 149 74.5
Zm00001eb078390 Zea mays HOM05D003781 ORTHO05D004299 1.0e-55 221.5 273 45.1
Zm00001eb078410 Zea mays HOM05D003781 ORTHO05D004299 1.0e-55 221.5 273 45.1
CSS0029856 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 3.9e-55 219.5 309 42.7
SEGI_09697 Sequoiadendron giganteum HOM05D003781 ORTHO05D004299 3.9e-55 219.5 317 40.7
Zm00001eb078400 Zea mays HOM05D003781 ORTHO05D004299 6.7e-55 218.8 273 44.7
Lj1A1051T45 Lonicera japonica HOM05D003781 ORTHO05D004299 1.3e-53 214.5 232 50.0
Nitab4.5_0008187g0010 Nicotiana tabacum HOM05D003781 ORTHO05D004299 1.3e-50 204.5 355 38.9
PSO675G6385 Papaver somniferum HOM05D003781 ORTHO05D004299 5.5e-49 199.1 290 42.4
AUR62040627 Chenopodium quinoa HOM05D003781 ORTHO05D004299 5.1e-47 192.6 218 48.2
Pp3c11_11100 Physcomitrium patens HOM05D003781 ORTHO05D004299 8.7e-47 191.8 283 41.3
SMO367G1200 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 9.7e-46 188.3 325 36.9
Cc02_g09440 Coffea canephora HOM05D003781 ORTHO05D004299 1.8e-44 184.1 261 42.1
ATR1127G225 Amborella trichopoda HOM05D003781 ORTHO05D004299 2.6e-43 180.3 318 38.1
SMO343G0088 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 1.8e-39 167.5 247 41.3
Sc07g0006420 Simmondsia chinensis HOM05D003781 ORTHO05D004299 4.5e-35 152.9 221 41.6
RhsimUnG0138400 Rhododendron simsii HOM05D003781 ORTHO05D004299 1.3e-34 151.4 182 46.2
HanXRQChr15g0472861 Helianthus annuus HOM05D003781 ORTHO05D004299 3.6e-32 143.3 118 55.1
SGA_v2.0_scaffold31G12848 Striga asiatica HOM05D003781 ORTHO05D004299 5.7e-30 136.0 206 42.2
AagrBONN_evm.TU.Sc2ySwM_228.4048 Anthoceros agrestis HOM05D003781 ORTHO05D004299 2.2e-29 134.0 450 25.8
TPR.G33838 Trifolium pratense HOM05D003781 ORTHO05D004299 4.8e-29 132.9 159 46.5
HanXRQChr03g0072391 Helianthus annuus HOM05D003781 ORTHO05D004299 3.1e-28 130.2 214 39.3
PRCOL_00001992 Prasinoderma coloniale HOM05D003781 ORTHO05D004299 1.0e-26 125.2 279 32.3
Mapoly0033s0057 Marchantia polymorpha HOM05D003781 ORTHO05D004299 1.3e-26 124.8 149 47.0
ATR0772G001 Amborella trichopoda HOM05D003781 ORTHO05D004299 2.3e-23 114.0 161 42.2
Actinidia06046 Actinidia chinensis HOM05D003781 ORTHO05D004299 2.2e-21 107.5 152 47.4
QL07p036300 Quercus lobata HOM05D001729 ORTHO05D001155 4.8e-21 106.3 210 36.2
Lsat_1_v5_gn_1_27721 Lactuca sativa HOM05D003781 ORTHO05D004299 2.0e-19 100.9 108 46.3
MCO12G060 Micromonas commoda HOM05D003781 ORTHO05D004299 1.0e-18 98.6 352 27.3
EL10Ac6g14086 Beta vulgaris HOM05D003781 ORTHO05D004299 1.7e-18 97.8 86 52.3
TPR.G742 Trifolium pratense HOM05D003781 ORTHO05D004299 3.0e-15 87.0 83 55.4
Gohir.D04G105401 Gossypium hirsutum HOM05D003781 ORTHO05D004299 3.4e-14 83.6 62 58.1
Gorai.005G179000 Gossypium raimondii HOM05D003781 ORTHO05D004299 4.4e-14 83.2 58 60.3
CBR_g51231 Chara braunii HOM05D003781 ORTHO05D004299 1.7e-13 81.3 128 39.1
CBR_g53498 Chara braunii HOM05D003781 ORTHO05D004299 2.8e-13 80.5 90 45.6
CBR_g53714 Chara braunii HOM05D003781 ORTHO05D004299 2.8e-13 80.5 230 28.7
SGA_v2.0_scaffold522G52710 Striga asiatica HOM05D003781 ORTHO05D004299 6.3e-13 79.3 109 40.4
MD10G1054000 Malus domestica HOM05D003781 ORTHO05D004299 4.1e-12 76.6 152 35.5
Cre12.g542400 Chlamydomonas reinhardtii HOM05D003781 ORTHO05D004299 1.7e-10 71.2 116 35.3
TPR.G38290 Trifolium pratense HOM05D010769 ORTHO05D011972 1.5e-09 68.2 56 51.8
TAR629G3109 Trochodendron aralioides HOM05D003781 ORTHO05D004299 1.9e-09 67.8 102 45.1
TPR.G165 Trifolium pratense HOM05D003781 ORTHO05D004299 7.2e-09 65.9 57 49.1
Cfa017313 Carpinus fangiana HOM05D003781 ORTHO05D004299 7.5e-06 55.8 35 65.7
TPR.G7497 Trifolium pratense HOM05D003781 ORTHO05D004299 9.8e-06 55.5 53 49.1


User provided reference genes

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