Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung04566 Brassica carinata HOM05D006248 ORTHO05D007896 1.3e-207 726.1 363 100.0
BolC7t46261H Brassica oleracea HOM05D006248 ORTHO05D007896 8.5e-186 653.7 369 91.9
A03p60090 Brassica napus HOM05D006248 ORTHO05D007896 6.1e-184 647.5 366 89.9
BraA03t15055Z Brassica rapa HOM05D006248 ORTHO05D007896 3.7e-181 638.3 376 87.2
BcaNung00567 Brassica carinata HOM05D006248 ORTHO05D007896 1.5e-179 632.9 354 92.1
C07p58030 Brassica napus HOM05D002357 ORTHO05D007896 1.0e-175 620.2 350 91.7
Thhalv10025500m.g Eutrema salsugineum HOM05D006248 ORTHO05D007896 4.8e-173 611.3 374 83.4
AL7G21560 Arabidopsis lyrata HOM05D006248 ORTHO05D007896 1.5e-161 573.2 360 82.2
Carub.0007s0999 Capsella rubella HOM05D006248 ORTHO05D007896 1.5e-161 573.2 361 81.4
AT4G30580 Arabidopsis thaliana HOM05D006248 ORTHO05D007896 3.0e-159 565.5 357 81.5
Sp7g28450 Schrenkiella parvula HOM05D006248 ORTHO05D007896 6.3e-157 557.8 323 88.5
Aa31LG2G19940 Aethionema arabicum HOM05D006248 ORTHO05D007896 2.3e-130 469.5 309 76.7
THA.LOC104803540 Tarenaya hassleriana HOM05D006248 ORTHO05D007896 6.4e-125 451.4 358 64.5
CARHR238450 Cardamine hirsuta HOM05D006248 ORTHO05D007896 7.0e-124 448.0 241 90.9
Ciclev10008803m.g Citrus clementina HOM05D006248 ORTHO05D007896 8.1e-112 407.9 276 71.4
Haze_19202 Corylus avellana HOM05D006248 ORTHO05D007896 1.6e-104 383.6 273 68.5
Phvul.007G037000 Phaseolus vulgaris HOM05D006248 ORTHO05D007896 8.1e-104 381.3 297 62.6
Thecc.09G029500 Theobroma cacao HOM05D006248 ORTHO05D007896 1.1e-103 380.9 360 54.4
Atru.chr7.37 Acer truncatum HOM05D006248 ORTHO05D007896 4.0e-103 379.0 272 67.3
Cfa020823 Carpinus fangiana HOM05D006248 ORTHO05D007896 4.0e-103 379.0 273 67.4
GSVIVG01023612001 Vitis vinifera HOM05D006248 ORTHO05D007896 5.2e-103 378.6 261 68.2
Actinidia38318 Actinidia chinensis HOM05D006248 ORTHO05D007896 1.2e-102 377.5 273 65.9
Glyma.06G220300 Glycine max HOM05D006248 ORTHO05D007896 1.2e-102 377.5 270 66.7
Medtr5g043620 Medicago truncatula HOM05D006248 ORTHO05D007896 1.2e-102 377.5 262 68.3
Glyma.12G163500 Glycine max HOM05D006248 ORTHO05D007896 2.6e-102 376.3 286 64.0
Gohir.A05G053300 Gossypium hirsutum HOM05D006248 ORTHO05D007896 1.7e-101 373.6 356 53.7
Psat1g022520 Pisum sativum HOM05D006248 ORTHO05D007896 2.2e-101 373.2 258 66.7
QL02p093323 Quercus lobata HOM05D006248 ORTHO05D007896 2.2e-101 373.2 274 66.8
TAR374G0826 Trochodendron aralioides HOM05D006248 ORTHO05D007896 2.2e-101 373.2 301 61.5
Nn7g36251 Nelumbo nucifera HOM05D006248 ORTHO05D007896 2.9e-101 372.9 297 59.9
TWI09G0649 Tripterygium wilfordii HOM05D006248 ORTHO05D007896 3.8e-101 372.5 290 61.0
Duzib168G1034 Durio zibethinus HOM05D006248 ORTHO05D007896 4.9e-101 372.1 355 53.0
Aqoxy2G03376 Aquilegia oxysepala HOM05D006248 ORTHO05D007896 1.4e-100 370.5 270 64.4
PSO384G3884 Papaver somniferum HOM05D006248 ORTHO05D007896 1.4e-100 370.5 285 61.1
Ca_03171_v3 Cicer arietinum L. HOM05D006248 ORTHO05D007896 5.4e-100 368.6 337 55.2
Potri.006G183700 Populus trichocarpa HOM05D006248 ORTHO05D007896 7.1e-100 368.2 260 68.5
CSS0008954 Camellia sinensis var. sinensis HOM05D006248 ORTHO05D007896 9.3e-100 367.9 268 65.7
Gohir.D05G054900 Gossypium hirsutum HOM05D006248 ORTHO05D007896 1.2e-99 367.5 348 54.0
Gorai.009G056600 Gossypium raimondii HOM05D006248 ORTHO05D007896 1.6e-99 367.1 348 54.3
PSO339G1376 Papaver somniferum HOM05D006248 ORTHO05D007896 1.6e-99 367.1 285 60.7
CANSAT80G1584 Cannabis sativa HOM05D006248 ORTHO05D007896 2.1e-99 366.7 354 53.4
Manes.14G143900 Manihot esculenta HOM05D006248 ORTHO05D007896 2.1e-99 366.7 282 62.4
Sed0021098 Sechium edule HOM05D006248 ORTHO05D007896 2.1e-99 366.7 278 64.4
CANSAT80G0015 Cannabis sativa HOM05D006248 ORTHO05D007896 4.6e-99 365.5 354 53.4
Sopen07g001690 Solanum pennellii HOM05D006248 ORTHO05D007896 4.6e-99 365.5 319 57.4
MSTRG.10698 Avicennia marina HOM05D006248 ORTHO05D007896 1.3e-98 364.0 307 60.3
HanXRQChr15g0490751 Helianthus annuus HOM05D006248 ORTHO05D007896 1.3e-98 364.0 273 61.9
Solyc07g005580.4 Solanum lycopersicum HOM05D006248 ORTHO05D007896 1.3e-98 364.0 257 66.1
TPR.G3534 Trifolium pratense HOM05D006248 ORTHO05D007896 1.3e-98 364.0 261 65.5
Hma1.2p1_0222F.1_g093600 Hydrangea macrophylla HOM05D006248 ORTHO05D007896 2.3e-98 363.2 299 59.2
MBI04_g39114_MAGBIO Magnolia biondii HOM05D006248 ORTHO05D007896 3.0e-98 362.8 257 66.1
CsaV3_2G008470 Cucumis sativus L. HOM05D006248 ORTHO05D007896 6.6e-98 361.7 271 64.6
Lalb_Chr08g0234181 Lupinus albus HOM05D006248 ORTHO05D007896 6.6e-98 361.7 259 65.3
Oeu054273.3 Olea europaea HOM05D006248 ORTHO05D007896 8.7e-98 361.3 269 66.2
CiPaw.16G110600 Carya illinoinensis HOM05D006248 ORTHO05D007896 1.5e-97 360.5 266 64.7
MELO3C008959.2 Cucumis melo HOM05D006248 ORTHO05D007896 1.5e-97 360.5 260 65.8
CiPaw.15G168100 Carya illinoinensis HOM05D006248 ORTHO05D007896 1.9e-97 360.1 273 64.5
ClCG02G020550 Citrullus lanatus HOM05D006248 ORTHO05D007896 1.9e-97 360.1 260 66.2
arahy.Tifrunner.gnm1.ann1.73F3S2 Arachis hypogaea HOM05D006248 ORTHO05D007896 2.5e-97 359.8 265 64.5
CAN.G160.64 Capsicum annuum HOM05D006248 ORTHO05D007896 3.3e-97 359.4 338 54.7
Lj6g0025769 Lotus japonicus HOM05D006248 ORTHO05D007896 4.3e-97 359.0 349 54.4
arahy.Tifrunner.gnm1.ann1.35XGVT Arachis hypogaea HOM05D006248 ORTHO05D007896 9.6e-97 357.8 265 64.2
Peaxi162Scf00401g00615 Petunia axillaris HOM05D006248 ORTHO05D007896 1.3e-96 357.5 269 63.2
Migut.K00321 Erythranthe guttata HOM05D006248 ORTHO05D007896 2.1e-96 356.7 310 57.4
EL10Ac3g05888 Beta vulgaris HOM05D006248 ORTHO05D007896 2.8e-96 356.3 266 62.8
CsaV3_4G030910 Cucumis sativus L. HOM05D006248 ORTHO05D007896 4.8e-96 355.5 260 65.0
DCAR_019396 Daucus carota HOM05D006248 ORTHO05D007896 4.8e-96 355.5 271 61.3
Rhsim01G0033000 Rhododendron simsii HOM05D006248 ORTHO05D007896 4.8e-96 355.5 270 63.7
SGA_v2.0_scaffold347G49562 Striga asiatica HOM05D006248 ORTHO05D007896 4.8e-96 355.5 270 64.4
Cpa.g.sc46.160 Carica papaya HOM05D006248 ORTHO05D007896 6.2e-96 355.1 211 77.7
Nitab4.5_0006523g0010 Nicotiana tabacum HOM05D006248 ORTHO05D007896 1.4e-95 354.0 305 56.7
ECA238G3803 Erigeron canadensis HOM05D006248 ORTHO05D007896 2.4e-95 353.2 259 64.1
Nitab4.5_0005147g0010 Nicotiana tabacum HOM05D006248 ORTHO05D007896 5.3e-95 352.1 304 56.6
Cc06_g14900 Coffea canephora HOM05D006248 ORTHO05D007896 6.9e-95 351.7 253 64.8
PGSC0003DMG402011138 Solanum tuberosum HOM05D006248 ORTHO05D007896 9.0e-95 351.3 235 69.4
AUR62015459 Chenopodium quinoa HOM05D006248 ORTHO05D007896 1.2e-94 350.9 259 63.7
Prupe.7G263300 Prunus persica HOM05D006248 ORTHO05D007896 1.5e-94 350.5 262 63.0
HanXRQChr14g0448981 Helianthus annuus HOM05D006248 ORTHO05D007896 2.6e-94 349.7 274 59.1
Duzib187G1891 Durio zibethinus HOM05D006248 ORTHO05D007896 3.4e-94 349.4 357 51.8
Lsat_1_v5_gn_4_165100 Lactuca sativa HOM05D006248 ORTHO05D007896 4.5e-94 349.0 271 60.1
Lj7A459G62 Lonicera japonica HOM05D006248 ORTHO05D007896 5.8e-94 348.6 292 57.9
Os10g0497100 Oryza sativa ssp. japonica HOM05D006248 ORTHO05D007896 9.9e-94 347.8 290 58.3
FAN23G2094 Fragaria x ananassa HOM05D000238 ORTHO05D001043 3.8e-93 345.9 275 60.7
FAN26G2974 Fragaria x ananassa HOM05D000238 ORTHO05D007896 4.9e-93 345.5 274 59.9
VMungo0720G3169 Vigna mungo HOM05D006248 ORTHO05D007896 6.4e-93 345.1 390 47.9
Hund24368 Selenicereus undatus HOM05D006248 ORTHO05D007896 1.1e-92 344.4 317 54.6
PGR102G2393 Punica granatum HOM05D006248 ORTHO05D007896 1.4e-92 344.0 261 64.4
RcHm_v2.0_Chr2g0085591 Rosa chinensis HOM05D006248 ORTHO05D007896 1.4e-92 344.0 352 51.7
Eucgr.C02495 Eucalyptus grandis HOM05D006248 ORTHO05D007896 1.9e-92 343.6 260 62.3
FvH4_1g00880 Fragaria vesca HOM05D006248 ORTHO05D007896 4.2e-92 342.4 355 50.4
Zm00001eb220920 Zea mays HOM05D006248 ORTHO05D007896 7.1e-92 341.7 313 55.0
ATR0579G167 Amborella trichopoda HOM05D006248 ORTHO05D007896 2.7e-91 339.7 261 62.1
Sabra06G0139600 Salix brachista HOM05D006248 ORTHO05D007896 2.7e-91 339.7 326 55.5
MD15G1144400 Malus domestica HOM05D006248 ORTHO05D007896 3.5e-91 339.3 282 59.9
SalBow1G5186 Salvia bowleyana HOM05D006248 ORTHO05D007896 3.5e-91 339.3 250 64.8
Sed0009955 Sechium edule HOM05D006248 ORTHO05D007896 4.6e-91 339.0 248 65.3
HPP92_007369 Vanilla planifolia HOM05D006248 ORTHO05D007896 3.0e-90 336.3 274 58.4
Dinv41376 Davidia involucrata HOM05D000122 ORTHO05D000139 1.9e-89 333.6 251 64.1
Lsat_1_v5_gn_2_85220 Lactuca sativa HOM05D006248 ORTHO05D007896 9.6e-89 331.3 252 61.5
Sc06g0007960 Simmondsia chinensis HOM05D006248 ORTHO05D007896 1.5e-86 323.9 211 70.6
SHI18557 Sapria himalayana HOM05D006248 ORTHO05D007896 3.4e-86 322.8 236 66.1
Gorai.010G113400 Gossypium raimondii HOM05D006248 ORTHO05D007896 2.3e-82 310.1 272 52.6
Gohir.D06G098450 Gossypium hirsutum HOM05D006248 ORTHO05D007896 6.7e-82 308.5 272 52.2
Gohir.A06G097800 Gossypium hirsutum HOM05D006248 ORTHO05D007896 5.6e-81 305.4 272 52.6
vmacro16799 Vaccinium macrocarpon HOM05D006248 ORTHO05D007896 1.1e-79 301.2 270 54.4
CDE11G0689 Ceratophyllum demersum HOM05D006248 ORTHO05D007896 3.8e-77 292.7 190 70.0
unitig_746.g26565 Utricularia gibba HOM05D006248 ORTHO05D007896 4.9e-77 292.4 221 64.7
Mapoly0168s0025 Marchantia polymorpha HOM05D006248 ORTHO05D007896 2.7e-75 286.6 275 50.5
arahy.Tifrunner.gnm1.ann1.VIT8JQ Arachis hypogaea HOM05D006248 ORTHO05D007896 1.1e-73 281.2 180 71.7
Pp3c2_20500 Physcomitrium patens HOM05D006248 ORTHO05D007896 9.7e-73 278.1 240 56.2
Actinidia27193 Actinidia chinensis HOM05D006248 ORTHO05D007896 1.1e-71 274.6 271 55.7
CBR_g21007 Chara braunii HOM05D006248 ORTHO05D007896 1.3e-69 267.7 234 54.7
SMO367G0591 Selaginella moellendorffii HOM05D006248 ORTHO05D007896 2.1e-67 260.4 210 56.2
Cre09.g398289 Chlamydomonas reinhardtii HOM05D006248 ORTHO05D007896 1.4e-63 247.7 241 51.9
PRCOL_00000503 Prasinoderma coloniale HOM05D006248 ORTHO05D007896 1.4e-60 237.7 243 47.3
MCO11G046 Micromonas commoda HOM05D006248 ORTHO05D007896 2.7e-51 206.8 212 47.6
COL.COLO4_18812 Corchorus olitorius HOM05D006248 ORTHO05D007896 2.6e-49 200.3 119 75.6
FAN28G2468 Fragaria x ananassa HOM05D000122 ORTHO05D000139 1.9e-44 184.1 242 42.6
MD02G1007100 Malus domestica HOM05D006248 ORTHO05D007896 2.1e-43 180.6 120 70.8
Eucgr.C02538 Eucalyptus grandis HOM05D006248 ORTHO05D007896 8.3e-40 168.7 140 55.0
AagrBONN_evm.TU.Sc2ySwM_368.2656 Anthoceros agrestis HOM05D006248 ORTHO05D007896 1.3e-37 161.4 159 49.7
BcaNung04570 Brassica carinata HOM05D006248 ORTHO05D007896 6.8e-26 122.5 69 88.4
Hund24348 Selenicereus undatus HOM05D006248 ORTHO05D007896 3.1e-23 113.6 83 62.7
PRCOL_00006194 Prasinoderma coloniale HOM05D006248 ORTHO05D010429 1.2e-17 95.1 152 38.2
Lj6g0015066 Lotus japonicus HOM05D001145 ORTHO05D001415 1.5e-17 94.7 65 67.7
AagrBONN_evm.TU.Sc2ySwM_362.1593 Anthoceros agrestis HOM05D006248 ORTHO05D007896 2.6e-17 94.0 157 38.9
Hund24363 Selenicereus undatus HOM05D006248 ORTHO05D007896 9.8e-17 92.0 61 67.2
Hund24364 Selenicereus undatus HOM05D006248 ORTHO05D007896 9.8e-17 92.0 61 67.2
Gohir.A01G079200 Gossypium hirsutum HOM05D008272 ORTHO05D010429 1.1e-15 88.6 134 38.1
C03p88640 Brassica napus HOM05D053232 ORTHO05D040256 1.4e-15 88.2 53 81.1
BolC3t21170H Brassica oleracea HOM05D053232 ORTHO05D040256 1.4e-15 88.2 53 81.1
Migut.M01769 Erythranthe guttata HOM05D008272 ORTHO05D010429 3.2e-15 87.0 192 31.8
RcHm_v2.0_Chr5g0039361 Rosa chinensis HOM05D008272 ORTHO05D010429 3.2e-15 87.0 200 30.5
QL08p010511 Quercus lobata HOM05D008272 ORTHO05D010429 4.1e-15 86.7 193 33.7
Gohir.D01G066300 Gossypium hirsutum HOM05D008272 ORTHO05D010429 2.0e-14 84.3 199 31.7
HPP92_007364 Vanilla planifolia HOM05D006248 ORTHO05D007896 2.7e-14 84.0 78 56.4
HPP92_011139 Vanilla planifolia HOM05D008272 ORTHO05D010429 2.7e-14 84.0 192 32.8
COL.COLO4_09657 Corchorus olitorius HOM05D008272 ORTHO05D010429 6.0e-14 82.8 134 35.8
ClCG10G005430 Citrullus lanatus HOM05D008272 ORTHO05D010429 7.8e-14 82.4 193 33.2
CiPaw.11G188800 Carya illinoinensis HOM05D008272 ORTHO05D010429 1.0e-13 82.0 193 32.6
Ciclev10008983m.g Citrus clementina HOM05D008272 ORTHO05D010429 1.3e-13 81.6 199 31.2
FAN24G3338 Fragaria x ananassa HOM05D008272 ORTHO05D010429 1.3e-13 81.6 192 31.8
MELO3C025383.2 Cucumis melo HOM05D008272 ORTHO05D010429 1.7e-13 81.3 193 33.2
Thecc.07G038700 Theobroma cacao HOM05D008272 ORTHO05D010429 1.7e-13 81.3 134 35.1
Duzib213G0361 Durio zibethinus HOM05D008272 ORTHO05D010429 2.3e-13 80.9 133 33.1
CsaV3_3G005170 Cucumis sativus L. HOM05D008272 ORTHO05D010429 3.0e-13 80.5 199 32.2
VMungo0647G0594 Vigna mungo HOM05D008272 ORTHO05D010429 3.9e-13 80.1 191 30.9
Hma1.2p1_1162F.1_g262620 Hydrangea macrophylla HOM05D008272 ORTHO05D010429 6.6e-13 79.3 192 31.8
VMungo0540G1205 Vigna mungo HOM05D008272 ORTHO05D010429 8.6e-13 79.0 183 30.1
GSVIVG01037640001 Vitis vinifera HOM05D008272 ORTHO05D010429 8.6e-13 79.0 134 35.1
Hund01995 Selenicereus undatus HOM05D008272 ORTHO05D010429 1.1e-12 78.6 199 29.6
Thecc.07G038600 Theobroma cacao HOM05D008272 ORTHO05D010429 1.9e-12 77.8 199 29.6
arahy.Tifrunner.gnm1.ann1.MV6CSW Arachis hypogaea HOM05D008272 ORTHO05D010429 2.5e-12 77.4 191 29.8
arahy.Tifrunner.gnm1.ann1.UDA7AK Arachis hypogaea HOM05D008272 ORTHO05D010429 2.5e-12 77.4 191 29.8
PGR083G1743 Punica granatum HOM05D008272 ORTHO05D010429 3.3e-12 77.0 199 30.7
Cpa.g.sc97.8 Carica papaya HOM05D008272 ORTHO05D010429 4.3e-12 76.6 192 31.8
Gorai.002G088200 Gossypium raimondii HOM05D008272 ORTHO05D010429 5.6e-12 76.3 198 30.3
Os04g0625200 Oryza sativa ssp. japonica HOM05D008272 ORTHO05D010429 7.3e-12 75.9 131 35.1
PRCOL_00003374 Prasinoderma coloniale HOM05D008272 ORTHO05D010429 1.2e-11 75.1 143 33.6
CiPaw.12G129300 Carya illinoinensis HOM05D008272 ORTHO05D010429 1.6e-11 74.7 192 30.7
Eucgr.F03464 Eucalyptus grandis HOM05D008272 ORTHO05D010429 2.1e-11 74.3 202 30.2
ATR0752G027 Amborella trichopoda HOM05D008272 ORTHO05D010429 2.8e-11 73.9 169 31.4
Lalb_Chr17g0348421 Lupinus albus HOM05D008272 ORTHO05D010429 2.8e-11 73.9 183 30.1
Duzib170G0415 Durio zibethinus HOM05D008272 ORTHO05D010429 3.6e-11 73.6 199 28.6
SMO119G0124 Selaginella moellendorffii HOM05D008272 ORTHO05D010429 3.6e-11 73.6 195 30.8
Potri.011G138900 Populus trichocarpa HOM05D008272 ORTHO05D010429 4.7e-11 73.2 186 31.2
unitig_62.g23281 Utricularia gibba HOM05D008272 ORTHO05D010429 4.7e-11 73.2 196 28.6
CDE02G1773 Ceratophyllum demersum HOM05D006248 ORTHO05D007896 1.8e-10 71.2 61 54.1
Manes.15G072400 Manihot esculenta HOM05D008272 ORTHO05D010429 3.1e-10 70.5 134 32.8
FvH4_2g04690 Fragaria vesca HOM05D008272 ORTHO05D010429 4.0e-10 70.1 90 41.1
Hund23252 Selenicereus undatus HOM05D008272 ORTHO05D010429 6.8e-10 69.3 244 24.6
Eucgr.F00768 Eucalyptus grandis HOM05D008272 ORTHO05D010429 8.9e-10 68.9 197 28.4
EL10Ac4g07813 Beta vulgaris HOM05D008272 ORTHO05D010429 1.5e-09 68.2 190 28.4
Lj1A872T54 Lonicera japonica HOM05D008272 ORTHO05D010429 1.5e-09 68.2 189 32.3
unitig_578.g15997 Utricularia gibba HOM05D008272 ORTHO05D010429 1.5e-09 68.2 122 34.4
Sabra11G0124700 Salix brachista HOM05D008272 ORTHO05D010429 2.6e-09 67.4 97 38.1
Nn004s41404 Nelumbo nucifera HOM05D008272 ORTHO05D010429 1.7e-08 64.7 158 31.0
Sabra11G0124400 Salix brachista HOM05D008272 ORTHO05D010429 2.9e-08 63.9 88 37.5
Cc05_g13720 Coffea canephora HOM05D008272 ORTHO05D010429 1.4e-07 61.6 193 26.9
Phvul.L001633 Phaseolus vulgaris HOM05D008272 ORTHO05D010429 1.4e-07 61.6 61 49.2
Hund14975 Selenicereus undatus HOM05D008272 ORTHO05D010429 1.9e-07 61.2 237 23.6
AUR62033852 Chenopodium quinoa HOM05D003844 ORTHO05D004534 3.2e-07 60.5 128 32.8
EL10Ac1g01762 Beta vulgaris HOM05D003844 ORTHO05D004534 5.4e-07 59.7 135 31.1
AUR62041676 Chenopodium quinoa HOM05D003844 ORTHO05D004534 7.0e-07 59.3 126 32.5
Sc16g0006090 Simmondsia chinensis HOM05D008272 ORTHO05D010429 1.6e-06 58.2 48 56.2


User provided reference genes

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