Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung04561 Brassica carinata HOM05D003759 ORTHO05D004149 1.7e-120 436.0 219 100.0
A03p60150 Brassica napus HOM05D003759 ORTHO05D004149 1.1e-84 317.0 221 80.1
BraA03t15060Z Brassica rapa HOM05D003759 ORTHO05D004149 1.1e-84 317.0 221 80.1
C07p58060 Brassica napus HOM05D000058 ORTHO05D000077 1.8e-82 309.7 222 78.4
BolC7t46265H Brassica oleracea HOM05D003759 ORTHO05D004149 1.8e-82 309.7 222 78.4
BcaNung00572 Brassica carinata HOM05D003759 ORTHO05D004149 6.9e-82 307.8 222 77.9
Sp7g28510 Schrenkiella parvula HOM05D003759 ORTHO05D004149 1.3e-80 303.5 238 73.1
BcaNung02973 Brassica carinata HOM05D003759 ORTHO05D004149 7.6e-65 251.1 229 65.1
C01p08320 Brassica napus HOM05D003759 ORTHO05D004149 2.5e-63 246.1 229 66.4
BolC1t00818H Brassica oleracea HOM05D003759 ORTHO05D004149 9.3e-63 244.2 228 65.8
BcaC09g51852 Brassica carinata HOM05D003759 ORTHO05D004149 1.2e-62 243.8 229 65.9
BraA01t00706Z Brassica rapa HOM05D003759 ORTHO05D004149 6.0e-62 241.5 229 65.9
A01p07630 Brassica napus HOM05D003759 ORTHO05D004149 1.8e-61 240.0 229 65.5
Thhalv10026294m.g Eutrema salsugineum HOM05D003759 ORTHO05D004149 2.4e-58 229.6 202 68.8
AL7G21510 Arabidopsis lyrata HOM05D003759 ORTHO05D004149 5.3e-58 228.4 229 62.0
CARHR238510 Cardamine hirsuta HOM05D003759 ORTHO05D004149 6.9e-58 228.0 226 62.8
AT4G30630 Arabidopsis thaliana HOM05D003759 ORTHO05D004149 3.2e-55 219.2 214 62.6
Carub.0007s0993 Capsella rubella HOM05D003759 ORTHO05D004149 5.0e-48 195.3 213 59.6
THA.LOC104803918 Tarenaya hassleriana HOM05D003759 ORTHO05D004149 7.7e-41 171.4 235 48.1
THA.LOC104819991 Tarenaya hassleriana HOM05D003759 ORTHO05D004149 9.4e-39 164.5 239 47.7
Aa31LG2G19870 Aethionema arabicum HOM05D003759 ORTHO05D004149 6.7e-29 131.7 210 45.7
Cpa.g.sc46.168 Carica papaya HOM05D003759 ORTHO05D004149 2.8e-27 126.3 244 41.0
TPR.G24855 Trifolium pratense HOM05D003759 ORTHO05D004149 6.8e-21 105.1 244 35.2
Medtr4g130700 Medicago truncatula HOM05D003759 ORTHO05D004149 1.5e-20 104.0 246 36.6
Lj4g0026574 Lotus japonicus HOM05D003759 ORTHO05D004149 5.7e-20 102.1 253 34.8
CANSAT11G0712 Cannabis sativa HOM05D003759 ORTHO05D004149 7.0e-18 95.1 257 33.9
PGR102G0437 Punica granatum HOM05D003759 ORTHO05D004149 1.6e-17 94.0 261 31.8
Thhalv10014665m.g Eutrema salsugineum HOM05D003759 ORTHO05D004149 2.7e-17 93.2 231 34.2
Psat4g009880 Pisum sativum HOM05D003759 ORTHO05D004149 4.5e-17 92.4 243 33.7
AT5G57910 Arabidopsis thaliana HOM05D003759 ORTHO05D004149 1.7e-16 90.5 225 34.7
Glyma.02G204900 Glycine max HOM05D003759 ORTHO05D004149 1.7e-16 90.5 246 33.7
Dinv43255 Davidia involucrata HOM05D003759 ORTHO05D004149 2.2e-16 90.1 245 33.5
Migut.K00316 Erythranthe guttata HOM05D003759 ORTHO05D004149 2.2e-16 90.1 223 35.4
Lsat_1_v5_gn_7_50020 Lactuca sativa HOM05D003759 ORTHO05D004149 2.2e-16 90.1 231 33.8
VMungo1215G0492 Vigna mungo HOM05D003759 ORTHO05D004149 2.2e-16 90.1 245 33.1
VMungo1309G0866 Vigna mungo HOM05D003759 ORTHO05D004149 2.2e-16 90.1 230 34.8
CsaV3_1G029030 Cucumis sativus L. HOM05D003759 ORTHO05D004149 2.9e-16 89.7 255 32.9
Sabra18G0089900 Salix brachista HOM05D003759 ORTHO05D004149 2.9e-16 89.7 235 33.6
A10p15270 Brassica napus HOM05D003759 ORTHO05D004149 3.8e-16 89.4 217 34.6
Duzib150G1598 Durio zibethinus HOM05D003759 ORTHO05D004149 5.0e-16 89.0 245 33.5
BcaB05g22386 Brassica carinata HOM05D003759 ORTHO05D004149 6.5e-16 88.6 220 36.8
C02p13760 Brassica napus HOM05D003759 ORTHO05D004149 6.5e-16 88.6 220 36.8
BolC2t07494H Brassica oleracea HOM05D003759 ORTHO05D004149 6.5e-16 88.6 220 36.8
HanXRQChr09g0244591 Helianthus annuus HOM05D003759 ORTHO05D004149 6.5e-16 88.6 245 36.3
Manes.06G035500 Manihot esculenta HOM05D003759 ORTHO05D004149 6.5e-16 88.6 242 33.9
BraA10t43608Z Brassica rapa HOM05D003759 ORTHO05D004149 8.5e-16 88.2 217 34.1
Phvul.003G155300 Phaseolus vulgaris HOM05D003759 ORTHO05D004149 8.5e-16 88.2 243 32.5
C09p49780 Brassica napus HOM05D003759 ORTHO05D004149 1.1e-15 87.8 225 32.9
Potri.018G105300 Populus trichocarpa HOM05D003759 ORTHO05D004149 1.1e-15 87.8 105 51.4
SGA_v2.0_scaffold45G17024 Striga asiatica HOM05D003759 ORTHO05D004149 1.1e-15 87.8 257 33.1
BolC9t57829H Brassica oleracea HOM05D003759 ORTHO05D004149 1.5e-15 87.4 223 32.3
Carub.0008s1844 Capsella rubella HOM05D003759 ORTHO05D004149 1.5e-15 87.4 229 31.4
HanXRQChr10g0313651 Helianthus annuus HOM05D003759 ORTHO05D004149 1.5e-15 87.4 245 34.3
Solyc12g009970.2 Solanum lycopersicum HOM05D003759 ORTHO05D004149 1.5e-15 87.4 279 31.9
ECA234G4063 Erigeron canadensis HOM05D003759 ORTHO05D004149 1.9e-15 87.0 242 34.3
Phvul.009G204700 Phaseolus vulgaris HOM05D003759 ORTHO05D004149 1.9e-15 87.0 241 32.0
SalBow1G3284 Salvia bowleyana HOM05D003759 ORTHO05D004149 1.9e-15 87.0 275 35.3
GSVIVG01023625001 Vitis vinifera HOM05D003759 ORTHO05D004149 1.9e-15 87.0 225 33.8
CiPaw.16G108400 Carya illinoinensis HOM05D003759 ORTHO05D004149 2.5e-15 86.7 234 31.6
Haze_19170 Corylus avellana HOM05D003759 ORTHO05D004149 3.2e-15 86.3 240 31.7
MELO3C010213.2 Cucumis melo HOM05D003759 ORTHO05D004149 3.2e-15 86.3 255 32.2
ClCG06G012480 Citrullus lanatus HOM05D003759 ORTHO05D004149 4.2e-15 85.9 261 31.8
Sopen12g004840 Solanum pennellii HOM05D003759 ORTHO05D004149 4.2e-15 85.9 294 30.3
THA.LOC104813538 Tarenaya hassleriana HOM05D003759 ORTHO05D004149 4.2e-15 85.9 232 32.3
BcaB05g22385 Brassica carinata HOM05D003759 ORTHO05D004149 5.5e-15 85.5 227 33.9
A03p12490 Brassica napus HOM05D003759 ORTHO05D004149 9.5e-15 84.7 229 35.4
HanXRQChr12g0357671 Helianthus annuus HOM05D003759 ORTHO05D004149 9.5e-15 84.7 243 33.7
Sabra06G0139200 Salix brachista HOM05D003759 ORTHO05D004149 9.5e-15 84.7 240 32.9
CiPaw.15G166900 Carya illinoinensis HOM05D003759 ORTHO05D004149 1.2e-14 84.3 239 31.8
Lalb_Chr13g0300821 Lupinus albus HOM05D003759 ORTHO05D004149 1.2e-14 84.3 252 32.9
Migut.J01364 Erythranthe guttata HOM05D003759 ORTHO05D004149 1.6e-14 84.0 269 32.3
A02p08110 Brassica napus HOM05D003759 ORTHO05D004149 2.1e-14 83.6 219 36.5
BraA02t05884Z Brassica rapa HOM05D003759 ORTHO05D004149 2.1e-14 83.6 219 36.5
Lalb_Chr08g0234281 Lupinus albus HOM05D003759 ORTHO05D004149 2.8e-14 83.2 251 33.5
Peaxi162Scf00062g00131 Petunia axillaris HOM05D003759 ORTHO05D004149 2.8e-14 83.2 278 32.0
TAR383G0583 Trochodendron aralioides HOM05D003759 ORTHO05D004149 2.8e-14 83.2 229 33.2
QL02p093514 Quercus lobata HOM05D003759 ORTHO05D004149 3.6e-14 82.8 239 31.8
Cfa020811 Carpinus fangiana HOM05D003759 ORTHO05D004149 6.1e-14 82.0 240 30.4
Eucgr.C00252 Eucalyptus grandis HOM05D003759 ORTHO05D004149 8.0e-14 81.6 268 31.7
vmacro06067 Vaccinium macrocarpon HOM05D003759 ORTHO05D004149 8.0e-14 81.6 298 28.5
CAN.G551.47 Capsicum annuum HOM05D003759 ORTHO05D004149 1.0e-13 81.3 261 31.0
Glyma.17G073100 Glycine max HOM05D003759 ORTHO05D004149 1.8e-13 80.5 246 32.1
Rhsim03G0257600 Rhododendron simsii HOM05D003759 ORTHO05D004149 3.0e-13 79.7 292 28.1
TAR625G0365 Trochodendron aralioides HOM05D003759 ORTHO05D004149 3.0e-13 79.7 224 35.7
ClCG02G014430 Citrullus lanatus HOM05D003759 ORTHO05D004149 5.2e-13 79.0 240 32.1
TWI34G0689 Tripterygium wilfordii HOM05D003759 ORTHO05D004149 5.2e-13 79.0 239 32.6
BolC3t13911H Brassica oleracea HOM05D003759 ORTHO05D004149 6.8e-13 78.6 229 34.5
CARHR271690 Cardamine hirsuta HOM05D003759 ORTHO05D004149 2.0e-12 77.0 230 33.5
TWI63G0632 Tripterygium wilfordii HOM05D003759 ORTHO05D004149 2.6e-12 76.6 103 47.6
C03p14700 Brassica napus HOM05D003759 ORTHO05D004149 3.4e-12 76.3 229 34.1
MD15G1151500 Malus domestica HOM05D003759 ORTHO05D004149 3.4e-12 76.3 241 29.9
PGSC0003DMG400007832 Solanum tuberosum HOM05D003759 ORTHO05D004149 3.4e-12 76.3 278 30.6
PGSC0003DMG400011142 Solanum tuberosum HOM05D003759 ORTHO05D004149 4.4e-12 75.9 298 29.2
MSTRG.6151 Avicennia marina HOM05D003759 ORTHO05D004149 5.7e-12 75.5 281 29.9
Ca_21134_v3 Cicer arietinum L. HOM05D003759 ORTHO05D004149 5.7e-12 75.5 232 28.9
Ca_21136_v3 Cicer arietinum L. HOM05D003759 ORTHO05D004149 5.7e-12 75.5 232 28.9
Gohir.D08G273700 Gossypium hirsutum HOM05D003759 ORTHO05D004149 5.7e-12 75.5 239 31.4
MELO3C004129.2 Cucumis melo HOM05D003759 ORTHO05D004149 9.8e-12 74.7 253 30.8
HanXRQChr03g0065561 Helianthus annuus HOM05D003759 ORTHO05D004149 9.8e-12 74.7 248 31.0
Atru.chr7.24 Acer truncatum HOM05D003759 ORTHO05D004149 1.3e-11 74.3 243 30.0
SalBow1G6739 Salvia bowleyana HOM05D003759 ORTHO05D004149 1.7e-11 73.9 287 27.9
MBI15_g18234_MAGBIO Magnolia biondii HOM05D003759 ORTHO05D004149 2.2e-11 73.6 210 30.0
Thecc.09G028600 Theobroma cacao HOM05D003759 ORTHO05D004149 2.2e-11 73.6 242 30.6
PSO339G1361 Papaver somniferum HOM05D003759 ORTHO05D004149 2.8e-11 73.2 221 32.6
Cc06_g14820 Coffea canephora HOM05D003759 ORTHO05D004149 3.7e-11 72.8 288 28.5
Nitab4.5_0002891g0100 Nicotiana tabacum HOM05D003759 ORTHO05D004149 3.7e-11 72.8 279 33.3
SGA_v2.0_scaffold265G46100 Striga asiatica HOM05D003759 ORTHO05D004149 4.9e-11 72.4 278 29.1
DCAR_014806 Daucus carota HOM05D003759 ORTHO05D004149 6.3e-11 72.0 278 28.4
Gorai.004G292200 Gossypium raimondii HOM05D003759 ORTHO05D004149 6.3e-11 72.0 239 31.0
Actinidia24379 Actinidia chinensis HOM05D003759 ORTHO05D004149 1.1e-10 71.2 169 32.0
Ciclev10009224m.g Citrus clementina HOM05D003759 ORTHO05D004149 1.1e-10 71.2 240 30.4
Nitab4.5_0001571g0070 Nicotiana tabacum HOM05D003759 ORTHO05D004149 1.4e-10 70.9 274 29.2
TWI32G1309 Tripterygium wilfordii HOM05D003759 ORTHO05D004149 1.4e-10 70.9 238 31.5
Sed0003883 Sechium edule HOM05D003759 ORTHO05D004149 1.8e-10 70.5 154 35.7
Oeu021304.1 Olea europaea HOM05D003759 ORTHO05D004149 2.4e-10 70.1 260 28.5
Sed0021485 Sechium edule HOM05D003759 ORTHO05D004149 2.4e-10 70.1 211 32.7
PSO384G1085 Papaver somniferum HOM05D003759 ORTHO05D004149 3.1e-10 69.7 214 32.2
Lalb_Chr12g0198751 Lupinus albus HOM05D003759 ORTHO05D004149 5.4e-10 68.9 254 30.3
MD02G1006500 Malus domestica HOM05D003759 ORTHO05D004149 5.4e-10 68.9 248 29.4
Aa31LG3G13740 Aethionema arabicum HOM05D003759 ORTHO05D004149 7.0e-10 68.6 214 31.8
Gohir.D05G054500 Gossypium hirsutum HOM05D003759 ORTHO05D004149 9.2e-10 68.2 240 29.2
Gorai.009G056200 Gossypium raimondii HOM05D003759 ORTHO05D004149 9.2e-10 68.2 240 29.2
Lsat_1_v5_gn_5_90100 Lactuca sativa HOM05D003759 ORTHO05D004149 9.2e-10 68.2 205 33.2
Dinv42845 Davidia involucrata HOM05D003759 ORTHO05D004149 1.2e-09 67.8 107 41.1
Sed0022175 Sechium edule HOM05D003759 ORTHO05D004149 1.2e-09 67.8 111 36.9
arahy.Tifrunner.gnm1.ann1.5MW7KS Arachis hypogaea HOM05D003759 ORTHO05D004149 2.0e-09 67.0 256 31.6
Aqoxy7G03381 Aquilegia oxysepala HOM05D003759 ORTHO05D004149 2.7e-09 66.6 206 29.1
Gohir.A08G252100 Gossypium hirsutum HOM05D003759 ORTHO05D004149 3.5e-09 66.2 220 29.1
Prupe.7G264400 Prunus persica HOM05D003759 ORTHO05D004149 3.5e-09 66.2 242 27.7
Gohir.A05G052900 Gossypium hirsutum HOM05D003759 ORTHO05D004149 4.5e-09 65.9 243 30.0
BcaB01g04466 Brassica carinata HOM05D003759 ORTHO05D004149 5.9e-09 65.5 221 32.1
Nitab4.5_0008875g0010 Nicotiana tabacum HOM05D003759 ORTHO05D004149 7.8e-09 65.1 277 30.7
BraA03t10564Z Brassica rapa HOM05D003759 ORTHO05D004149 1.0e-08 64.7 229 32.3
FAN23G1979 Fragaria x ananassa HOM05D003759 ORTHO05D004149 1.0e-08 64.7 243 28.4
unitig_748.g7198 Utricularia gibba HOM05D003759 ORTHO05D004149 1.0e-08 64.7 245 26.1
arahy.Tifrunner.gnm1.ann1.WN4J7U Arachis hypogaea HOM05D003759 ORTHO05D004149 1.3e-08 64.3 256 31.2
Gohir.D07G031400 Gossypium hirsutum HOM05D003759 ORTHO05D004149 1.3e-08 64.3 242 29.8
Gorai.001G032800 Gossypium raimondii HOM05D003759 ORTHO05D004149 1.3e-08 64.3 242 29.8
CAN.G160.50 Capsicum annuum HOM05D003759 ORTHO05D004149 1.7e-08 63.9 275 29.5
COL.COLO4_18822 Corchorus olitorius HOM05D003759 ORTHO05D004149 1.7e-08 63.9 241 27.4
FAN15G3555 Fragaria x ananassa HOM05D002088 ORTHO05D002204 2.9e-08 63.2 104 40.4
Nitab4.5_0005869g0060 Nicotiana tabacum HOM05D003759 ORTHO05D004149 2.9e-08 63.2 278 29.1
FvH4_2g41181 Fragaria vesca HOM05D008192 ORTHO05D010301 3.8e-08 62.8 104 40.4
FAN27G3331 Fragaria x ananassa HOM05D002088 ORTHO05D002204 3.8e-08 62.8 104 39.4
FAN28G1366 Fragaria x ananassa HOM05D003759 ORTHO05D004149 3.8e-08 62.8 243 27.6
FAN20G1545 Fragaria x ananassa HOM05D008192 ORTHO05D010301 6.6e-08 62.0 104 39.4
HanXRQChr09g0244571 Helianthus annuus HOM05D003759 ORTHO05D004149 8.6e-08 61.6 261 31.0
Actinidia01426 Actinidia chinensis HOM05D003759 ORTHO05D004149 1.1e-07 61.2 63 52.4
HPP92_018342 Vanilla planifolia HOM05D003759 ORTHO05D004149 1.1e-07 61.2 215 29.8
Gohir.A07G027400 Gossypium hirsutum HOM05D003759 ORTHO05D004149 1.5e-07 60.8 242 28.1
CsaV3_2G007570 Cucumis sativus L. HOM05D003759 ORTHO05D004149 1.9e-07 60.5 215 29.8
Dinv41366 Davidia involucrata HOM05D003759 ORTHO05D004149 1.9e-07 60.5 58 53.4
Sp6g19580 Schrenkiella parvula HOM05D003759 ORTHO05D004149 1.9e-07 60.5 191 31.4
Lj6g0003054 Lotus japonicus HOM05D003759 ORTHO05D004149 2.5e-07 60.1 258 28.3
Sopen07g001800 Solanum pennellii HOM05D003759 ORTHO05D004149 2.5e-07 60.1 298 27.2
AL8G33980 Arabidopsis lyrata HOM05D003759 ORTHO05D004149 3.3e-07 59.7 205 32.7
RcHm_v2.0_Chr6g0299341 Rosa chinensis HOM05D008192 ORTHO05D010301 3.3e-07 59.7 117 34.2
Os08g0270800 Oryza sativa ssp. japonica HOM05D037779 ORTHO05D004149 4.3e-07 59.3 214 29.4
Prupe.1G394700 Prunus persica HOM05D008192 ORTHO05D010301 4.3e-07 59.3 99 37.4
RcHm_v2.0_Chr2g0085521 Rosa chinensis HOM05D003759 ORTHO05D004149 4.3e-07 59.3 242 27.3
Solyc07g005690.3 Solanum lycopersicum HOM05D003759 ORTHO05D004149 4.3e-07 59.3 299 27.1
Oeu026461.3 Olea europaea HOM05D003759 ORTHO05D004149 5.6e-07 58.9 297 27.3
Actinidia38317 Actinidia chinensis HOM05D003759 ORTHO05D004149 7.3e-07 58.5 285 26.0
Hma1.2p1_0222F.1_g093656 Hydrangea macrophylla HOM05D003759 ORTHO05D004149 7.3e-07 58.5 92 42.4
Hma1.2p1_2680F.1_g326800 Hydrangea macrophylla HOM05D003759 ORTHO05D004149 7.3e-07 58.5 92 42.4
Actinidia38668 Actinidia chinensis HOM05D003759 ORTHO05D004149 9.5e-07 58.2 53 56.6
Zm00001eb412280 Zea mays HOM05D037779 ORTHO05D004149 9.5e-07 58.2 214 26.2
Ciclev10009717m.g Citrus clementina HOM05D008192 ORTHO05D010301 1.2e-06 57.8 61 55.7
MD15G1041800 Malus domestica HOM05D008192 ORTHO05D010301 1.2e-06 57.8 106 37.7
HPP92_010344 Vanilla planifolia HOM05D045913 ORTHO05D004149 1.6e-06 57.4 224 28.6
CSS0036931 Camellia sinensis var. sinensis HOM05D003759 ORTHO05D004149 2.1e-06 57.0 280 26.4
Duzib168G0610 Durio zibethinus HOM05D008192 ORTHO05D010301 3.6e-06 56.2 216 29.6
FvH4_1g00810 Fragaria vesca HOM05D003759 ORTHO05D004149 3.6e-06 56.2 242 26.4
Oeu028997.1 Olea europaea HOM05D003759 ORTHO05D004149 3.6e-06 56.2 211 29.4
Duzib187G1399 Durio zibethinus HOM05D008192 ORTHO05D010301 4.7e-06 55.8 215 30.7
GSVIVG01035976001 Vitis vinifera HOM05D008192 ORTHO05D010301 4.7e-06 55.8 85 45.9
Manes.03G008000 Manihot esculenta HOM05D008192 ORTHO05D010301 8.0e-06 55.1 93 40.9
Potri.006G183000 Populus trichocarpa HOM05D003759 ORTHO05D004149 8.0e-06 55.1 210 30.5


User provided reference genes

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