Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung04494 Brassica carinata HOM05D003676 ORTHO05D004262 3.5e-170 601.7 336 100.0
A09p10110 Brassica napus HOM05D003676 ORTHO05D004262 4.6e-85 318.9 235 87.2
BraA09t36654Z Brassica rapa HOM05D003676 ORTHO05D004262 2.3e-84 316.6 235 86.8
BolC9t54086H Brassica oleracea HOM05D003676 ORTHO05D004262 1.6e-82 310.5 235 85.5
C09p11980 Brassica napus HOM05D003676 ORTHO05D004262 1.4e-81 307.4 235 86.0
Thhalv10004614m.g Eutrema salsugineum HOM05D003676 ORTHO05D004262 1.3e-68 264.2 235 68.5
AT5G66230 Arabidopsis thaliana HOM05D003676 ORTHO05D003783 3.9e-68 262.7 241 75.1
CARHR281500 Cardamine hirsuta HOM05D003676 ORTHO05D004262 7.8e-61 238.4 238 65.5
Aa31LG1G14730 Aethionema arabicum HOM05D003676 ORTHO05D004262 2.4e-57 226.9 250 60.0
Carub.0008s2827 Capsella rubella HOM05D003676 ORTHO05D004262 2.0e-56 223.8 243 64.2
Sp2g30470 Schrenkiella parvula HOM05D003676 ORTHO05D004262 7.9e-53 211.8 237 66.2
Sabra05G0093400 Salix brachista HOM05D003676 ORTHO05D004262 6.2e-42 175.6 270 48.5
Potri.005G114100 Populus trichocarpa HOM05D003676 ORTHO05D004262 4.2e-38 162.9 271 52.0
Manes.01G145700 Manihot esculenta HOM05D003676 ORTHO05D004262 9.3e-38 161.8 263 50.6
Nitab4.5_0005660g0010 Nicotiana tabacum HOM05D003676 ORTHO05D004262 1.0e-36 158.3 255 54.5
MD02G1132500 Malus domestica HOM05D003676 ORTHO05D004262 3.9e-36 156.4 281 42.7
Dinv40087 Davidia involucrata HOM05D003676 ORTHO05D004262 6.7e-36 155.6 261 41.0
Thecc.01G019000 Theobroma cacao HOM05D003676 ORTHO05D004262 1.1e-35 154.8 268 48.1
MD15G1246000 Malus domestica HOM05D003676 ORTHO05D004262 7.4e-35 152.1 273 46.5
QL06p032755 Quercus lobata HOM05D003676 ORTHO05D004262 7.4e-35 152.1 275 46.9
Nitab4.5_0003382g0020 Nicotiana tabacum HOM05D003676 ORTHO05D004262 1.6e-34 151.0 256 50.4
Peaxi162Scf00083g00320 Petunia axillaris HOM05D003676 ORTHO05D004262 2.2e-34 150.6 257 50.6
arahy.Tifrunner.gnm1.ann1.CCI0LY Arachis hypogaea HOM05D003676 ORTHO05D004262 4.8e-34 149.4 272 49.3
ClCG10G000750 Citrullus lanatus HOM05D003676 ORTHO05D004262 4.8e-34 149.4 267 50.2
FAN23G0443 Fragaria x ananassa HOM05D003676 ORTHO05D004262 8.2e-34 148.7 273 48.0
FAN26G1220 Fragaria x ananassa HOM05D003676 ORTHO05D004262 8.2e-34 148.7 273 45.4
CSS0018215 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 1.4e-33 147.9 266 48.9
RcHm_v2.0_Chr2g0099451 Rosa chinensis HOM05D003676 ORTHO05D004262 1.4e-33 147.9 274 42.3
Sopen02g028680 Solanum pennellii HOM05D003676 ORTHO05D004262 1.4e-33 147.9 263 46.8
arahy.Tifrunner.gnm1.ann1.3LB61T Arachis hypogaea HOM05D003676 ORTHO05D004262 2.4e-33 147.1 271 48.7
PGSC0003DMG400003640 Solanum tuberosum HOM05D003676 ORTHO05D004262 3.1e-33 146.7 259 44.4
Eucgr.I02350 Eucalyptus grandis HOM05D003676 ORTHO05D004262 6.9e-33 145.6 275 48.4
FvH4_1g11840 Fragaria vesca HOM05D003676 ORTHO05D004262 6.9e-33 145.6 288 47.2
CiPaw.07G058500 Carya illinoinensis HOM05D003676 ORTHO05D004262 9.0e-33 145.2 277 49.8
Duzib187G0981 Durio zibethinus HOM05D003676 ORTHO05D004262 9.0e-33 145.2 273 46.9
FAN19G1818 Fragaria x ananassa HOM05D003676 ORTHO05D004262 9.0e-33 145.2 279 46.2
Actinidia22976 Actinidia chinensis HOM05D003676 ORTHO05D004262 1.2e-32 144.8 263 45.2
CsaV3_3G000800 Cucumis sativus L. HOM05D003676 ORTHO05D004262 1.5e-32 144.4 272 47.4
Sed0017342 Sechium edule HOM05D003676 ORTHO05D004262 1.5e-32 144.4 257 47.9
Lj4g0000664 Lotus japonicus HOM05D003676 ORTHO05D004262 2.0e-32 144.1 270 41.5
Lalb_Chr05g0212401 Lupinus albus HOM05D003676 ORTHO05D004262 2.0e-32 144.1 253 41.1
Solyc02g083890.4 Solanum lycopersicum HOM05D003676 ORTHO05D004262 2.6e-32 143.7 263 43.7
Medtr8g075950 Medicago truncatula HOM05D003676 ORTHO05D004262 7.7e-32 142.1 248 49.6
Prupe.7G168100 Prunus persica HOM05D003676 ORTHO05D004262 7.7e-32 142.1 284 44.7
vmacro18414 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 7.7e-32 142.1 268 44.8
Dinv33627 Davidia involucrata HOM05D003676 ORTHO05D004262 1.3e-31 141.4 264 41.7
THA.LOC104819178 Tarenaya hassleriana HOM05D003676 ORTHO05D004262 1.3e-31 141.4 250 44.0
Glyma.16G128800 Glycine max HOM05D003676 ORTHO05D004262 2.9e-31 140.2 259 47.1
Nn5g30150 Nelumbo nucifera HOM05D003676 ORTHO05D004262 2.9e-31 140.2 283 39.6
MELO3C013767.2 Cucumis melo HOM05D003676 ORTHO05D004262 5.0e-31 139.4 274 45.3
Gohir.A02G170700 Gossypium hirsutum HOM05D003676 ORTHO05D004262 6.5e-31 139.0 257 43.6
Actinidia17444 Actinidia chinensis HOM05D003676 ORTHO05D004262 8.5e-31 138.7 273 41.0
TAR376G0994 Trochodendron aralioides HOM05D003676 ORTHO05D004262 8.5e-31 138.7 359 35.1
Duzib264G0036 Durio zibethinus HOM05D003676 ORTHO05D004262 1.1e-30 138.3 274 44.5
Atru.chr3.798 Acer truncatum HOM05D003676 ORTHO05D004262 1.9e-30 137.5 278 38.5
CSS0021991 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 2.5e-30 137.1 271 42.8
CSS0022685 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 3.2e-30 136.7 271 41.3
Gohir.D03G009400 Gossypium hirsutum HOM05D003676 ORTHO05D004262 3.2e-30 136.7 257 44.4
Psat4g099080 Pisum sativum HOM05D003676 ORTHO05D004262 3.2e-30 136.7 254 40.6
TPR.G30058 Trifolium pratense HOM05D003676 ORTHO05D004262 3.2e-30 136.7 250 44.8
TAR381G0332 Trochodendron aralioides HOM05D003676 ORTHO05D004262 3.2e-30 136.7 274 44.5
CANSAT01G0038 Cannabis sativa HOM05D003676 ORTHO05D004262 4.2e-30 136.3 281 43.8
Cfa006972 Carpinus fangiana HOM05D003676 ORTHO05D004262 5.5e-30 136.0 263 48.3
TWI09G1351 Tripterygium wilfordii HOM05D003676 ORTHO05D004262 7.2e-30 135.6 257 49.4
AL8G45300 Arabidopsis lyrata HOM05D003676 ORTHO05D004262 9.4e-30 135.2 121 71.1
Cpa.g.sc6.251 Carica papaya HOM05D003676 ORTHO05D004262 9.4e-30 135.2 265 47.9
Cc07_g10720 Coffea canephora HOM05D003676 ORTHO05D004262 1.2e-29 134.8 279 41.2
TAR628G0168 Trochodendron aralioides HOM05D003676 ORTHO05D004262 1.2e-29 134.8 261 46.4
MSTRG.2714 Avicennia marina HOM05D003676 ORTHO05D004262 7.9e-29 132.1 269 44.6
DCAR_016607 Daucus carota HOM05D003676 ORTHO05D004262 1.0e-28 131.7 268 50.0
VMungo0251G0225 Vigna mungo HOM05D003676 ORTHO05D004262 1.4e-28 131.3 264 48.5
Ciclev10025949m.g Citrus clementina HOM05D003676 ORTHO05D004262 3.0e-28 130.2 277 38.3
Glyma.02G048700 Glycine max HOM05D003676 ORTHO05D004262 3.0e-28 130.2 260 48.1
Phvul.003G262100 Phaseolus vulgaris HOM05D003676 ORTHO05D004262 3.0e-28 130.2 251 47.4
Hma1.2p1_0956F.1_g241320 Hydrangea macrophylla HOM05D003676 ORTHO05D004262 3.9e-28 129.8 282 41.8
Sc07g0000980 Simmondsia chinensis HOM05D003676 ORTHO05D004262 8.8e-28 128.6 259 47.5
Gohir.A11G175400 Gossypium hirsutum HOM05D003676 ORTHO05D004262 2.0e-27 127.5 260 38.5
PGR119G1864 Punica granatum HOM05D003676 ORTHO05D004262 4.3e-27 126.3 277 44.8
COL.COLO4_21910 Corchorus olitorius HOM05D003676 ORTHO05D004262 5.7e-27 125.9 272 38.6
AUR62029464 Chenopodium quinoa HOM05D003676 ORTHO05D004262 7.4e-27 125.6 265 38.1
Nn1g05889 Nelumbo nucifera HOM05D003676 ORTHO05D004262 7.4e-27 125.6 263 46.8
Gorai.003G009600 Gossypium raimondii HOM05D003676 ORTHO05D004262 9.7e-27 125.2 263 42.2
MBI05_g37447_MAGBIO Magnolia biondii HOM05D003676 ORTHO05D004262 9.7e-27 125.2 265 35.8
CAN.G1671.14 Capsicum annuum HOM05D003676 ORTHO05D004262 2.2e-26 124.0 275 44.4
Hma1.2p1_0258F.1_g104145 Hydrangea macrophylla HOM05D003676 ORTHO05D004262 3.7e-26 123.2 252 42.5
Gohir.D11G182900 Gossypium hirsutum HOM05D003676 ORTHO05D004262 4.8e-26 122.9 259 38.6
Manes.02G104500 Manihot esculenta HOM05D003676 ORTHO05D004262 4.8e-26 122.9 234 43.6
Lj2A468T73 Lonicera japonica HOM05D003676 ORTHO05D004262 8.2e-26 122.1 272 41.5
Gorai.007G194900 Gossypium raimondii HOM05D003676 ORTHO05D004262 1.1e-25 121.7 259 38.2
AL5G31630 Arabidopsis lyrata HOM05D003676 ORTHO05D004262 1.4e-25 121.3 249 39.4
Rhsim10G0212200 Rhododendron simsii HOM05D003676 ORTHO05D004262 1.4e-25 121.3 273 44.3
Hund16490 Selenicereus undatus HOM05D003676 ORTHO05D004262 2.4e-25 120.6 286 40.2
Hund14045 Selenicereus undatus HOM05D003676 ORTHO05D004262 5.3e-25 119.4 274 37.2
TWI53G0168 Tripterygium wilfordii HOM05D003676 ORTHO05D004262 3.4e-24 116.7 216 50.5
Sp5g10990 Schrenkiella parvula HOM05D003676 ORTHO05D004262 4.5e-24 116.3 249 37.8
PSO541G5658 Papaver somniferum HOM05D003676 ORTHO05D004262 1.7e-23 114.4 258 41.9
PSO675G7127 Papaver somniferum HOM05D003676 ORTHO05D004262 2.9e-23 113.6 260 40.8
Gohir.D12G060000 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.1e-22 111.7 257 46.3
Gorai.008G063100 Gossypium raimondii HOM05D003676 ORTHO05D004262 1.1e-22 111.7 256 44.9
Gorai.007G195000 Gossypium raimondii HOM05D003676 ORTHO05D004262 1.9e-22 110.9 239 38.1
Rhsim08G0033700 Rhododendron simsii HOM05D003676 ORTHO05D004262 3.2e-22 110.2 267 39.7
SalBow3G1193 Salvia bowleyana HOM05D003676 ORTHO05D004262 4.2e-22 109.8 224 44.6
ECA232G1625 Erigeron canadensis HOM05D003676 ORTHO05D004262 7.2e-22 109.0 247 35.6
Ca_22374_v3 Cicer arietinum L. HOM05D003676 ORTHO05D004262 9.4e-22 108.6 243 36.6
Gohir.D11G183000 Gossypium hirsutum HOM05D003676 ORTHO05D004262 9.4e-22 108.6 228 39.9
Lj4A218T52 Lonicera japonica HOM05D003676 ORTHO05D004262 9.4e-22 108.6 251 36.7
Gohir.A12G059600 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.2e-21 108.2 261 45.6
FAN28G1902 Fragaria x ananassa HOM05D003676 ORTHO05D004262 2.7e-21 107.1 267 45.7
Actinidia30997 Actinidia chinensis HOM05D003676 ORTHO05D004262 6.1e-21 105.9 255 34.5
HanXRQChr09g0256601 Helianthus annuus HOM05D003676 ORTHO05D004262 1.1e-19 101.7 214 38.8
SGA_v2.0_scaffold78G25382 Striga asiatica HOM05D003676 ORTHO05D004262 3.3e-19 100.1 250 38.4
Potri.007G057800 Populus trichocarpa HOM05D003676 ORTHO05D004262 4.4e-19 99.8 221 47.5
Ah.03g148760 Amaranthus hybridus HOM05D003676 ORTHO05D004262 5.7e-19 99.4 261 39.1
Oeu063192.2 Olea europaea HOM05D003676 ORTHO05D004262 7.4e-19 99.0 229 35.8
Glyma.01G166300 Glycine max HOM05D003676 ORTHO05D004262 1.7e-18 97.8 267 34.5
Aqoxy6G02292 Aquilegia oxysepala HOM05D003676 ORTHO05D004262 4.8e-18 96.3 265 33.6
GSVIVG01018782001 Vitis vinifera HOM05D003676 ORTHO05D004262 8.2e-18 95.5 206 40.3
Oeu012589.1 Olea europaea HOM05D003676 ORTHO05D004262 1.1e-17 95.1 236 39.4
Glyma.11G077200 Glycine max HOM05D003676 ORTHO05D004262 1.4e-17 94.7 264 42.0
AUR62003369 Chenopodium quinoa HOM05D003676 ORTHO05D004262 7.0e-17 92.4 260 33.5
MBI05_g30743_MAGBIO Magnolia biondii HOM05D003676 ORTHO05D004262 1.2e-16 91.7 263 33.1
Sc16g0002190 Simmondsia chinensis HOM05D003676 ORTHO05D004262 1.5e-16 91.3 281 29.9
HPP92_020902 Vanilla planifolia HOM05D003676 ORTHO05D004262 1.5e-16 91.3 276 38.8
Ca_25824_v3 Cicer arietinum L. HOM05D003676 ORTHO05D004262 7.7e-16 89.0 260 42.3
Phvul.002G108800 Phaseolus vulgaris HOM05D003676 ORTHO05D004262 1.3e-15 88.2 253 35.2
unitig_736.g22721 Utricularia gibba HOM05D003676 ORTHO05D004262 2.2e-15 87.4 229 39.3
Medtr5g022010 Medicago truncatula HOM05D003676 ORTHO05D004262 1.5e-14 84.7 194 38.7
SEGI_09532 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 3.2e-14 83.6 249 31.3
SEGI_21114 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 3.2e-14 83.6 249 31.3
Psat2g154560 Pisum sativum HOM05D003676 ORTHO05D004262 1.2e-13 81.6 173 49.7
Oeu048461.1 Olea europaea HOM05D003676 ORTHO05D004262 2.1e-13 80.9 234 46.2
AT3G51230 Arabidopsis thaliana HOM05D003676 ORTHO05D004262 3.6e-13 80.1 112 52.7
CDE05G2608 Ceratophyllum demersum HOM05D003676 ORTHO05D004262 3.6e-13 80.1 254 32.7
BcaC09g50089 Brassica carinata HOM05D003676 ORTHO05D004262 8.0e-13 79.0 215 34.0
C01p29220 Brassica napus HOM05D003676 ORTHO05D004262 8.0e-13 79.0 215 34.0
CARHR160810 Cardamine hirsuta HOM05D003676 ORTHO05D004262 8.0e-13 79.0 118 47.5
HanXRQChr15g0487251 Helianthus annuus HOM05D003676 ORTHO05D004262 8.0e-13 79.0 210 36.7
unitig_899.g14713 Utricularia gibba HOM05D003676 ORTHO05D004262 1.0e-12 78.6 215 32.6
BcaNung00393 Brassica carinata HOM05D003676 ORTHO05D004262 3.0e-12 77.0 119 50.4
Carub.0005s1760 Capsella rubella HOM05D003676 ORTHO05D004262 3.0e-12 77.0 234 33.8
A01p23560 Brassica napus HOM05D003676 ORTHO05D004262 3.9e-12 76.6 118 50.0
BraA01t02262Z Brassica rapa HOM05D003676 ORTHO05D004262 3.9e-12 76.6 118 50.0
Migut.H01153 Erythranthe guttata HOM05D003676 ORTHO05D004262 5.2e-12 76.3 229 38.4
Nn1g05888 Nelumbo nucifera HOM05D003676 ORTHO05D004262 5.2e-12 76.3 262 30.2
Lsat_1_v5_gn_4_146360 Lactuca sativa HOM05D003676 ORTHO05D004262 1.1e-11 75.1 202 32.2
RcHm_v2.0_Chr6g0272671 Rosa chinensis HOM05D003676 ORTHO05D004262 1.5e-11 74.7 166 42.2
Lsat_1_v5_gn_3_74521 Lactuca sativa HOM05D003676 ORTHO05D004262 2.6e-11 73.9 208 33.7
Os10g0577400 Oryza sativa ssp. japonica HOM05D003676 ORTHO05D004262 5.7e-11 72.8 242 36.4
Zm00001eb224920 Zea mays HOM05D003676 ORTHO05D004262 7.4e-11 72.4 280 31.8
TPR.G18183 Trifolium pratense HOM05D003676 ORTHO05D004262 9.7e-11 72.0 219 36.1
SHI32179 Sapria himalayana HOM05D003676 ORTHO05D004262 1.3e-10 71.6 265 29.1
PGSC0003DMG400023891 Solanum tuberosum HOM05D003676 ORTHO05D004262 5.3e-09 66.2 215 33.0
ECA246G1385 Erigeron canadensis HOM05D003676 ORTHO05D004262 9.1e-09 65.5 141 40.4
CDE05G0776 Ceratophyllum demersum HOM05D003676 ORTHO05D004262 7.7e-08 62.4 149 37.6
Lalb_Chr09g0321731 Lupinus albus HOM05D003676 ORTHO05D004262 3.8e-07 60.1 77 42.9
Haze_03763 Corylus avellana HOM05D003676 ORTHO05D004262 8.5e-07 58.9 84 50.0
Zm00001eb024930 Zea mays HOM05D003676 ORTHO05D004262 9.4e-06 55.5 247 33.2


User provided reference genes

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