Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung04465 Brassica carinata HOM05D004288 ORTHO05D004997 1.9e-30 135.6 67 100.0
BcaNung06280 Brassica carinata HOM05D004288 ORTHO05D004997 1.9e-30 135.6 67 100.0
BolC9t60183H Brassica oleracea HOM05D004288 ORTHO05D004997 3.1e-25 118.2 69 91.3
C09p74500 Brassica napus HOM05D004288 ORTHO05D004997 9.1e-25 116.7 67 92.5
BcaNung02758 Brassica carinata HOM05D004288 ORTHO05D004997 1.3e-23 112.8 67 91.0
A10p33580 Brassica napus HOM05D004288 ORTHO05D004997 1.5e-22 109.4 79 77.2
BraA10t45389Z Brassica rapa HOM05D004288 ORTHO05D004997 1.5e-22 109.4 79 77.2
Thhalv10015166m.g Eutrema salsugineum HOM05D004288 ORTHO05D004997 2.2e-18 95.5 66 72.7
BcaC03g13064 Brassica carinata HOM05D004288 ORTHO05D004997 5.4e-17 90.9 64 75.0
C02p00310 Brassica napus HOM05D004288 ORTHO05D004997 5.4e-17 90.9 64 75.0
Sp6g40470 Schrenkiella parvula HOM05D004288 ORTHO05D004997 9.1e-17 90.1 66 71.2
BolC2t06031H Brassica oleracea HOM05D004288 ORTHO05D004997 2.7e-16 88.6 64 73.4
BraA02t04704Z Brassica rapa HOM05D004288 ORTHO05D004997 2.7e-16 88.6 64 71.9
AT5G01075 Arabidopsis thaliana HOM05D004288 ORTHO05D004997 4.5e-16 87.8 66 66.7
BcaB05g21897 Brassica carinata HOM05D004288 ORTHO05D004997 5.9e-16 87.4 64 71.9
Carub.0006s0080 Capsella rubella HOM05D004288 ORTHO05D004997 5.0e-15 84.3 66 66.7
AL6G11150 Arabidopsis lyrata HOM05D004288 ORTHO05D004997 1.5e-14 82.8 66 68.2
CARHR211400 Cardamine hirsuta HOM05D004288 ORTHO05D004997 5.4e-09 64.3 67 56.7
THA.LOC104801605 Tarenaya hassleriana HOM05D004288 ORTHO05D004997 3.5e-08 61.6 45 62.2
Cpa.g.sc21.102 Carica papaya HOM05D004288 ORTHO05D004997 7.8e-08 60.5 41 73.2
THA.LOC104825767 Tarenaya hassleriana HOM05D004288 ORTHO05D004997 2.3e-07 58.9 48 60.4
Gohir.A06G023200 Gossypium hirsutum HOM05D004288 ORTHO05D004997 2.9e-07 58.5 37 64.9
Gohir.D06G020400 Gossypium hirsutum HOM05D004288 ORTHO05D004997 2.9e-07 58.5 37 64.9
Gorai.010G024900 Gossypium raimondii HOM05D004288 ORTHO05D004997 2.9e-07 58.5 37 64.9
Manes.18G045000 Manihot esculenta HOM05D004288 ORTHO05D004997 8.6e-07 57.0 40 60.0
Solyc12g088410.3 Solanum lycopersicum HOM05D004288 ORTHO05D004997 8.6e-07 57.0 49 55.1
Sopen12g030390 Solanum pennellii HOM05D004288 ORTHO05D004997 8.6e-07 57.0 49 55.1
PGSC0003DMG401011559 Solanum tuberosum HOM05D004288 ORTHO05D004997 1.1e-06 56.6 49 53.1
Nitab4.5_0000934g0110 Nicotiana tabacum HOM05D004288 ORTHO05D004997 1.5e-06 56.2 44 56.8
Nitab4.5_0011511g0010 Nicotiana tabacum HOM05D004288 ORTHO05D004997 1.5e-06 56.2 41 61.0
Actinidia22683 Actinidia chinensis HOM05D004288 ORTHO05D004997 1.9e-06 55.8 49 53.1
CAN.G107.3 Capsicum annuum HOM05D004288 ORTHO05D004997 1.9e-06 55.8 39 66.7
Phvul.001G026400 Phaseolus vulgaris HOM05D004288 ORTHO05D004997 1.9e-06 55.8 56 48.2
Potri.014G017600 Populus trichocarpa HOM05D004288 ORTHO05D004997 1.9e-06 55.8 47 53.2
Nitab4.5_0000569g0070 Nicotiana tabacum HOM05D004288 ORTHO05D004997 4.3e-06 54.7 40 62.5
TWI12G0116 Tripterygium wilfordii HOM05D004288 ORTHO05D004997 4.3e-06 54.7 40 60.0
TAR376G0993 Trochodendron aralioides HOM05D004288 ORTHO05D004997 4.3e-06 54.7 45 53.3
Actinidia10187 Actinidia chinensis HOM05D004288 ORTHO05D004997 5.6e-06 54.3 49 51.0
QL12p037641 Quercus lobata HOM05D004288 ORTHO05D004997 5.6e-06 54.3 45 51.1
Sopen04g031610 Solanum pennellii HOM05D004288 ORTHO05D004997 5.6e-06 54.3 43 58.1
Dinv44970 Davidia involucrata HOM05D004288 ORTHO05D004997 7.3e-06 53.9 45 51.1
Solyc04g078010.4 Solanum lycopersicum HOM05D004288 ORTHO05D004997 7.3e-06 53.9 40 60.0
PGSC0003DMG400021529 Solanum tuberosum HOM05D004288 ORTHO05D004997 7.3e-06 53.9 40 60.0
Ciclev10002881m.g Citrus clementina HOM05D004288 ORTHO05D004997 9.5e-06 53.5 45 53.3
Thecc.08G091000 Theobroma cacao HOM05D004288 ORTHO05D004997 9.5e-06 53.5 49 49.0


User provided reference genes

Program Settings