Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung04449 Brassica carinata HOM05D009057 ORTHO05D011698 8.7e-41 169.9 85 100.0
A10p33500 Brassica napus HOM05D009057 ORTHO05D011698 1.3e-36 156.0 85 91.8
BraA10t45380Z Brassica rapa HOM05D009057 ORTHO05D011698 1.4e-35 152.5 85 90.6
CARHR211270 Cardamine hirsuta HOM05D009057 ORTHO05D011698 6.0e-34 147.1 85 85.9
AT5G02090 Arabidopsis thaliana HOM05D009057 ORTHO05D011698 1.3e-33 146.0 86 86.0
AL6G11310 Arabidopsis lyrata HOM05D009057 ORTHO05D011698 6.7e-33 143.7 87 87.4
Thhalv10015172m.g Eutrema salsugineum HOM05D009057 ORTHO05D011698 2.2e-28 128.6 75 85.3
BolC9t60174H Brassica oleracea HOM05D000031 ORTHO05D001864 3.2e-27 124.8 61 98.4
Carub.0006s0093 Capsella rubella HOM05D009057 ORTHO05D011698 3.3e-24 114.8 71 80.3
Thhalv10015182m.g Eutrema salsugineum HOM05D009057 ORTHO05D011698 6.2e-23 110.5 75 72.0
THA.LOC109116793 Tarenaya hassleriana HOM05D009057 ORTHO05D011698 1.4e-22 109.4 80 68.8
BcaB01g06211 Brassica carinata HOM05D009057 ORTHO05D011698 6.5e-20 100.5 74 70.3
BcaNung04451 Brassica carinata HOM05D009057 ORTHO05D011698 7.1e-19 97.1 73 68.5
BcaB01g06070 Brassica carinata HOM05D009057 ORTHO05D011698 9.3e-19 96.7 73 69.9
C03p00790 Brassica napus HOM05D009057 ORTHO05D011698 9.3e-19 96.7 73 69.9
BolC3t12642H Brassica oleracea HOM05D009057 ORTHO05D011698 9.3e-19 96.7 73 69.9
A03p00520 Brassica napus HOM05D009057 ORTHO05D011698 7.9e-18 93.6 73 68.5
BraA03t09443Z Brassica rapa HOM05D009057 ORTHO05D011698 7.9e-18 93.6 73 68.5
A10p33520 Brassica napus HOM05D000031 ORTHO05D001864 5.1e-17 90.9 61 75.4
C09p74410 Brassica napus HOM05D009057 ORTHO05D011698 3.3e-16 88.2 45 97.8
BraA10t45382Z Brassica rapa HOM05D000031 ORTHO05D001864 4.3e-16 87.8 61 72.1
BraA04t17355Z Brassica rapa HOM05D009057 ORTHO05D011698 9.0e-14 80.1 45 91.1
A01p14190 Brassica napus HOM05D009057 ORTHO05D011698 1.2e-10 69.7 69 58.0
A03p11190 Brassica napus HOM05D009057 ORTHO05D011698 3.6e-10 68.2 57 63.2
A03p65000 Brassica napus HOM05D009057 ORTHO05D011698 1.0e-09 66.6 57 63.2
BraA03t15559Z Brassica rapa HOM05D009057 ORTHO05D011698 1.0e-09 66.6 57 63.2
CiPaw.10G148000 Carya illinoinensis HOM05D007574 ORTHO05D007552 1.0e-09 66.6 81 45.7
A09p23580 Brassica napus HOM05D009057 ORTHO05D011698 1.4e-09 66.2 57 61.4
A09p44690 Brassica napus HOM05D009057 ORTHO05D011698 2.3e-09 65.5 57 63.2
BraA06t26621Z Brassica rapa HOM05D009057 ORTHO05D011698 2.3e-09 65.5 69 56.5
BraA01t00192Z Brassica rapa HOM05D009057 ORTHO05D011698 3.0e-09 65.1 69 56.5
BraA09t36710Z Brassica rapa HOM05D009057 ORTHO05D011698 1.1e-08 63.2 57 61.4
Hma1.2p1_0766F.1_g215190 Hydrangea macrophylla HOM05D007574 ORTHO05D007552 1.5e-08 62.8 80 46.2
FAN05G1951 Fragaria x ananassa HOM05D007574 ORTHO05D007552 3.3e-08 61.6 82 47.6
Duzib106G1300 Durio zibethinus HOM05D007574 ORTHO05D007552 7.4e-08 60.5 85 45.9
PGSC0003DMG400019195 Solanum tuberosum HOM05D007574 ORTHO05D007552 9.7e-08 60.1 84 51.2
Peaxi162Scf00330g00113 Petunia axillaris HOM05D007574 ORTHO05D007552 1.3e-07 59.7 83 48.2
Nitab4.5_0004744g0030 Nicotiana tabacum HOM05D007574 ORTHO05D007552 1.7e-07 59.3 83 48.2
RcHm_v2.0_Chr3g0465351 Rosa chinensis HOM05D007574 ORTHO05D007552 1.7e-07 59.3 73 49.3
FAN09G4076 Fragaria x ananassa HOM05D007574 ORTHO05D007552 2.8e-07 58.5 82 45.1
Potri.006G090100 Populus trichocarpa HOM05D007574 ORTHO05D007552 2.8e-07 58.5 84 45.2
Thecc.05G033200 Theobroma cacao HOM05D007574 ORTHO05D007552 2.8e-07 58.5 86 44.2
MBI05_g35175_MAGBIO Magnolia biondii HOM05D007574 ORTHO05D007552 4.8e-07 57.8 84 42.9
Gohir.D04G123600 Gossypium hirsutum HOM05D007574 ORTHO05D007552 6.3e-07 57.4 73 46.6
CSS0039527 Camellia sinensis var. sinensis HOM05D007574 ORTHO05D007552 1.1e-06 56.6 62 54.8
Dinv37135 Davidia involucrata HOM05D007574 ORTHO05D007552 1.1e-06 56.6 75 49.3
C09p74430 Brassica napus HOM05D000031 ORTHO05D001864 1.4e-06 56.2 56 57.1
Gohir.D01G210600 Gossypium hirsutum HOM05D007574 ORTHO05D007552 3.1e-06 55.1 78 41.0
Gorai.002G256300 Gossypium raimondii HOM05D007574 ORTHO05D007552 3.1e-06 55.1 78 41.0
Manes.09G095800 Manihot esculenta HOM05D007574 ORTHO05D007552 4.1e-06 54.7 75 49.3
BcaNung04452 Brassica carinata HOM05D009057 ORTHO05D011698 5.3e-06 54.3 32 81.2
Gohir.A01G221600 Gossypium hirsutum HOM05D007574 ORTHO05D007552 5.3e-06 54.3 72 43.1
Nn2g13483 Nelumbo nucifera HOM05D007574 ORTHO05D007552 5.3e-06 54.3 71 45.1
Duzib128G0069 Durio zibethinus HOM05D007574 ORTHO05D007552 6.9e-06 53.9 86 43.0
Glyma.03G067200 Glycine max HOM05D007574 ORTHO05D007552 9.1e-06 53.5 73 52.1
Gohir.A04G084700 Gossypium hirsutum HOM05D007574 ORTHO05D007552 9.1e-06 53.5 69 49.3
Nitab4.5_0004598g0040 Nicotiana tabacum HOM05D007574 ORTHO05D007552 9.1e-06 53.5 84 42.9
PGR031G1556 Punica granatum HOM05D007574 ORTHO05D007552 9.1e-06 53.5 76 51.3


User provided reference genes

Program Settings