Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung04415 Brassica carinata HOM05D004890 ORTHO05D005869 0.0e+00 3772.6 1920 100.0
BcaC09g51795 Brassica carinata HOM05D004890 ORTHO05D005869 0.0e+00 3251.1 1934 87.3
C01p08940 Brassica napus HOM05D004890 ORTHO05D005869 0.0e+00 3251.1 1934 87.3
A01p08000 Brassica napus HOM05D004890 ORTHO05D005869 0.0e+00 3238.4 1933 87.2
BolC1t00885H Brassica oleracea HOM05D004890 ORTHO05D005869 0.0e+00 3218.7 1937 86.9
BraA01t00745Z Brassica rapa HOM05D004890 ORTHO05D005869 0.0e+00 3206.8 1934 86.8
Sp7g28010 Schrenkiella parvula HOM05D004890 ORTHO05D005869 0.0e+00 3039.6 1968 80.5
Thhalv10024190m.g Eutrema salsugineum HOM05D004890 ORTHO05D005869 0.0e+00 2753.4 1965 74.6
AL7G22040 Arabidopsis lyrata HOM05D004890 ORTHO05D005869 0.0e+00 2683.3 1980 72.6
AT4G30150 Arabidopsis thaliana HOM05D004890 ORTHO05D005869 0.0e+00 2645.2 2020 70.1
CARHR238050 Cardamine hirsuta HOM05D004890 ORTHO05D005869 0.0e+00 2599.7 1976 71.7
Carub.0007s1046 Capsella rubella HOM05D004890 ORTHO05D005869 0.0e+00 2556.9 1978 69.0
Aa31LG2G20400 Aethionema arabicum HOM05D004890 ORTHO05D005869 0.0e+00 2231.8 1952 63.5
THA.LOC104811117 Tarenaya hassleriana HOM05D004890 ORTHO05D005869 0.0e+00 2013.8 2020 55.6
Thecc.02G067700 Theobroma cacao HOM05D004890 ORTHO05D005869 0.0e+00 1449.1 2088 42.2
Atru.chr5.3215 Acer truncatum HOM05D004890 ORTHO05D005869 0.0e+00 1421.4 2132 41.1
Duzib052G0882 Durio zibethinus HOM05D004890 ORTHO05D005869 0.0e+00 1406.0 2038 42.0
Potri.004G167600 Populus trichocarpa HOM05D004890 ORTHO05D005869 0.0e+00 1404.0 2050 41.2
Sabra04G0112400 Salix brachista HOM05D004890 ORTHO05D005869 0.0e+00 1359.0 2080 40.5
Gorai.002G192700 Gossypium raimondii HOM05D004890 ORTHO05D005869 0.0e+00 1353.2 2009 40.7
QL11p047502 Quercus lobata HOM05D004890 ORTHO05D005869 0.0e+00 1352.0 2154 39.2
Gohir.D01G155500 Gossypium hirsutum HOM05D004890 ORTHO05D005869 0.0e+00 1348.6 2009 40.8
Gohir.A01G163400 Gossypium hirsutum HOM05D004890 ORTHO05D005869 0.0e+00 1337.8 2010 40.7
CiPaw.05G076600 Carya illinoinensis HOM05D004890 ORTHO05D005869 0.0e+00 1337.0 2145 39.7
Ciclev10030126m.g Citrus clementina HOM05D004890 ORTHO05D005869 0.0e+00 1333.5 2093 40.1
TWI79G0196 Tripterygium wilfordii HOM05D004890 ORTHO05D005869 0.0e+00 1325.5 2134 40.1
MD05G1115300 Malus domestica HOM05D004890 ORTHO05D005869 0.0e+00 1289.2 2142 38.7
Haze_02203 Corylus avellana HOM05D004890 ORTHO05D005869 0.0e+00 1284.6 2096 39.1
CANSAT54G0305 Cannabis sativa HOM05D004890 ORTHO05D005869 0.0e+00 1279.2 2084 38.6
TAR628G0176 Trochodendron aralioides HOM05D004890 ORTHO05D005869 0.0e+00 1273.1 2098 38.8
Manes.05G200700 Manihot esculenta HOM05D004890 ORTHO05D005869 0.0e+00 1260.4 2129 38.4
GSVIVG01024104001 Vitis vinifera HOM05D004890 ORTHO05D005869 0.0e+00 1259.2 2013 39.7
PGR042G1730 Punica granatum HOM05D004890 ORTHO05D005869 0.0e+00 1258.0 2108 38.3
FAN20G1645 Fragaria x ananassa HOM05D004890 ORTHO05D005869 0.0e+00 1238.8 2048 38.9
FAN15G0743 Fragaria x ananassa HOM05D004890 ORTHO05D005869 0.0e+00 1237.6 2047 38.8
Actinidia20483 Actinidia chinensis HOM05D004890 ORTHO05D005869 0.0e+00 1234.9 2071 37.4
RcHm_v2.0_Chr2g0118221 Rosa chinensis HOM05D004890 ORTHO05D005869 0.0e+00 1223.4 2139 38.0
Sed0011290 Sechium edule HOM05D004890 ORTHO05D005869 0.0e+00 1215.3 2097 37.5
Rhsim11G0187500 Rhododendron simsii HOM05D004890 ORTHO05D005869 0.0e+00 1213.4 2109 36.7
FvH4_2g02080 Fragaria vesca HOM05D004890 ORTHO05D005869 0.0e+00 1195.6 2007 38.8
ClCG02G011430 Citrullus lanatus HOM05D004890 ORTHO05D005869 0.0e+00 1184.9 2102 36.6
CsaV3_2G015660 Cucumis sativus L. HOM05D004890 ORTHO05D005869 0.0e+00 1184.9 2092 37.0
Nn5g30145 Nelumbo nucifera HOM05D004890 ORTHO05D005869 0.0e+00 1183.3 2148 36.3
MELO3C020778.2 Cucumis melo HOM05D004890 ORTHO05D005869 0.0e+00 1158.7 2079 36.7
FAN24G3218 Fragaria x ananassa HOM05D004890 ORTHO05D005869 0.0e+00 1139.0 1991 37.9
Cc02_g16570 Coffea canephora HOM05D004890 ORTHO05D005869 0.0e+00 1132.1 2004 36.7
Sc18g0006690 Simmondsia chinensis HOM05D004890 ORTHO05D005869 0.0e+00 1101.3 1986 35.7
HanXRQChr05g0137581 Helianthus annuus HOM05D004890 ORTHO05D005869 0.0e+00 1093.2 1984 36.4
CAN.G647.2 Capsicum annuum HOM05D004890 ORTHO05D005869 0.0e+00 1076.6 2081 34.4
Aqoxy2G01603 Aquilegia oxysepala HOM05D004890 ORTHO05D005869 1.3e-311 1074.7 2106 35.2
MSTRG.20033 Avicennia marina HOM05D004890 ORTHO05D005869 2.6e-311 1073.2 2081 35.5
Nitab4.5_0010816g0010 Nicotiana tabacum HOM05D004890 ORTHO05D005869 2.6e-311 1073.2 2093 33.8
Lsat_1_v5_gn_8_125620 Lactuca sativa HOM05D004890 ORTHO05D005869 2.9e-309 1066.2 2005 35.1
Solyc10g054860.2 Solanum lycopersicum HOM05D004890 ORTHO05D005869 4.9e-309 1065.4 2103 34.6
ECA233G1715 Erigeron canadensis HOM05D004890 ORTHO05D005869 1.4e-308 1063.9 2002 35.9
Sopen10g024780 Solanum pennellii HOM05D004890 ORTHO05D005869 1.4e-308 1063.9 2109 34.3
DCAR_017255 Daucus carota HOM05D004890 ORTHO05D005869 2.7e-307 1059.7 2040 35.6
Lj3g0013742 Lotus japonicus HOM05D004890 ORTHO05D005869 4.6e-307 1058.9 2080 34.4
Hund00048 Selenicereus undatus HOM05D004890 ORTHO05D005869 4.6e-307 1058.9 2089 34.4
Lalb_Chr01g0001291 Lupinus albus HOM05D004890 ORTHO05D005869 9.6e-305 1051.2 2031 34.9
Cpa.g.sc37.197 Carica papaya HOM05D004890 ORTHO05D005869 1.8e-303 1047.0 1966 36.3
Nitab4.5_0000956g0200 Nicotiana tabacum HOM05D004890 ORTHO05D005869 1.2e-302 1044.3 2105 33.6
EL10Ac9g21450 Beta vulgaris HOM05D004890 ORTHO05D005869 1.4e-300 1037.3 2111 34.1
TPR.G17158 Trifolium pratense HOM05D004890 ORTHO05D005869 9.3e-300 1034.6 2086 35.0
Peaxi162Scf00538g00518 Petunia axillaris HOM05D004890 ORTHO05D005869 2.3e-298 1030.0 2042 34.3
vmacro02247 Vaccinium macrocarpon HOM05D004890 ORTHO05D005869 3.3e-297 1026.2 2053 33.8
Psat7g178440 Pisum sativum HOM05D004890 ORTHO05D005869 4.1e-295 1019.2 2079 34.6
Ca_18997_v3 Cicer arietinum L. HOM05D004890 ORTHO05D005869 4.2e-292 1009.2 2086 34.2
arahy.Tifrunner.gnm1.ann1.T6KP8R Arachis hypogaea HOM05D004890 ORTHO05D005869 2.7e-291 1006.5 2000 33.9
Medtr4g075520 Medicago truncatula HOM05D004890 ORTHO05D005869 5.7e-289 998.8 2101 33.7
Migut.B00164 Erythranthe guttata HOM05D004890 ORTHO05D005869 1.2e-286 991.1 1994 33.7
AUR62013096 Chenopodium quinoa HOM05D004890 ORTHO05D005869 5.1e-282 975.7 2095 34.0
Dinv04970 Davidia involucrata HOM05D004890 ORTHO05D005869 2.5e-281 973.4 1739 36.8
arahy.Tifrunner.gnm1.ann1.03J21L Arachis hypogaea HOM05D004890 ORTHO05D005869 3.2e-276 956.4 1975 33.2
SGA_v2.0_scaffold58G20451 Striga asiatica HOM05D004890 ORTHO05D005869 4.2e-276 956.1 2034 33.3
PSO675G7923 Papaver somniferum HOM05D004890 ORTHO05D005869 1.7e-272 944.1 1984 33.7
PSO541G5249 Papaver somniferum HOM05D004890 ORTHO05D005869 1.1e-268 931.4 2046 33.1
SalBow6G6075 Salvia bowleyana HOM05D004890 ORTHO05D005869 3.3e-265 919.8 2011 32.4
Lj5C185G17 Lonicera japonica HOM05D004890 ORTHO05D005869 2.8e-264 916.8 1697 35.4
Eucgr.G01753 Eucalyptus grandis HOM05D004890 ORTHO05D005869 3.2e-260 903.3 2009 32.6
VMungo0251G2716 Vigna mungo HOM05D004890 ORTHO05D005869 7.2e-260 902.1 2082 32.1
Glyma.08G099200 Glycine max HOM05D004890 ORTHO05D005869 3.6e-259 899.8 2075 31.9
Prupe.8G159900 Prunus persica HOM05D004890 ORTHO05D005869 2.0e-257 894.0 1522 38.2
ATR0810G151 Amborella trichopoda HOM05D004890 ORTHO05D005869 1.9e-252 877.5 2158 31.6
FAN27G2536 Fragaria x ananassa HOM05D004890 ORTHO05D005869 4.4e-249 866.3 2019 32.7
Zm00001eb007680 Zea mays HOM05D004890 ORTHO05D005869 7.0e-247 859.0 2012 31.7
Phvul.002G179700 Phaseolus vulgaris HOM05D004890 ORTHO05D005869 2.1e-243 847.4 1952 32.3
RcHm_v2.0_Chr6g0245311 Rosa chinensis HOM05D004890 ORTHO05D005869 1.3e-229 801.6 1464 36.5
AUR62010102 Chenopodium quinoa HOM05D004890 ORTHO05D005869 7.3e-220 769.2 1631 33.2
CDE05G0022 Ceratophyllum demersum HOM05D004890 ORTHO05D005869 9.3e-207 725.7 1987 29.5
PSO210G5131 Papaver somniferum HOM05D004890 ORTHO05D005869 1.0e-197 695.7 1627 32.1
Ah.01g022450 Amaranthus hybridus HOM05D004890 ORTHO05D005869 3.0e-189 667.5 1456 33.1
Oeu010054.2 Olea europaea HOM05D004890 ORTHO05D005869 6.7e-173 613.2 1334 31.0
RcHm_v2.0_Chr6g0245571 Rosa chinensis HOM05D004890 ORTHO05D005869 7.7e-169 599.7 1961 28.1
SHI05677 Sapria himalayana HOM05D004890 ORTHO05D005869 7.0e-146 523.5 1118 32.9
FAN20G2618 Fragaria x ananassa HOM05D004890 ORTHO05D005869 6.3e-131 473.8 697 41.9
RcHm_v2.0_Chr6g0245521 Rosa chinensis HOM05D004890 ORTHO05D005869 2.3e-128 465.3 767 40.4
RcHm_v2.0_Chr6g0245301 Rosa chinensis HOM05D004890 ORTHO05D005869 1.0e-125 456.4 522 49.4
Os03g0203100 Oryza sativa ssp. japonica HOM05D004890 ORTHO05D005869 5.4e-122 444.1 1001 31.5
HPP92_020637 Vanilla planifolia HOM05D004890 ORTHO05D005869 1.0e-112 413.3 1307 26.9
AagrBONN_evm.TU.Sc2ySwM_362.822 Anthoceros agrestis HOM05D004890 ORTHO05D005869 1.9e-106 392.5 2201 23.2
MD10G1117200 Malus domestica HOM05D004890 ORTHO05D005869 6.6e-104 384.0 779 35.8
Pp3c13_15040 Physcomitrium patens HOM05D004890 ORTHO05D005869 1.9e-103 382.5 2109 22.8
Mapoly0049s0043 Marchantia polymorpha HOM05D004890 ORTHO05D005869 3.1e-101 375.2 2265 23.5
PSO675G2309 Papaver somniferum HOM05D004890 ORTHO05D005869 7.4e-79 300.8 661 32.4
SMO164G0051 Selaginella moellendorffii HOM05D004890 ORTHO05D005869 2.5e-66 259.2 1855 22.2
Glyma.08G231200 Glycine max HOM05D004890 ORTHO05D005869 1.8e-56 226.5 568 30.8
DCAR_002202 Daucus carota HOM05D004890 ORTHO05D005869 4.3e-55 221.9 635 28.3
HPP92_020638 Vanilla planifolia HOM05D004890 ORTHO05D005869 3.7e-54 218.8 682 27.6
MD10G1117700 Malus domestica HOM05D004890 ORTHO05D005869 6.9e-53 214.5 171 60.8
A10p06990 Brassica napus HOM05D004890 ORTHO05D005869 9.1e-53 214.2 118 85.6
A07p11080 Brassica napus HOM05D004890 ORTHO05D005869 2.9e-51 209.1 114 86.0
BolC5t32490H Brassica oleracea HOM05D004890 ORTHO05D005869 5.1e-48 198.4 104 87.5
RcHm_v2.0_Chr6g0245531 Rosa chinensis HOM05D004890 ORTHO05D005869 5.1e-48 198.4 399 31.1
SEGI_38665 Sequoiadendron giganteum HOM05D004890 ORTHO05D005869 3.3e-47 195.7 716 27.8
Dinv04971 Davidia involucrata HOM05D004890 ORTHO05D005869 1.1e-45 190.7 246 41.1
A01p19080 Brassica napus HOM05D004890 ORTHO05D005869 2.9e-43 182.6 100 85.0
BolC7t43608H Brassica oleracea HOM05D004890 ORTHO05D005869 2.9e-43 182.6 93 89.2
BraA01t01851Z Brassica rapa HOM05D004890 ORTHO05D005869 8.5e-43 181.0 93 89.2
C05p37500 Brassica napus HOM05D004890 ORTHO05D005869 1.9e-42 179.9 88 90.9
Ah.01g022440 Amaranthus hybridus HOM05D004890 ORTHO05D005869 2.5e-42 179.5 392 32.1
Oeu033530.1 Olea europaea HOM05D004890 ORTHO05D005869 9.4e-42 177.6 235 43.0
SHI05679 Sapria himalayana HOM05D004890 ORTHO05D005869 1.4e-40 173.7 496 29.2
RcHm_v2.0_Chr6g0245351 Rosa chinensis HOM05D004890 ORTHO05D005869 8.5e-35 154.5 215 41.9
BolC1t00884H Brassica oleracea HOM05D004890 ORTHO05D005869 1.0e-27 131.0 122 59.0
RcHm_v2.0_Chr6g0244911 Rosa chinensis HOM05D004890 ORTHO05D005869 3.8e-27 129.0 332 31.9
C01p08930 Brassica napus HOM05D004890 ORTHO05D005869 5.5e-26 125.2 136 52.9
COL.COLO4_17250 Corchorus olitorius HOM05D004890 ORTHO05D005869 7.2e-26 124.8 384 28.1
MD10G1117300 Malus domestica HOM05D004890 ORTHO05D005869 8.0e-25 121.3 238 32.4
BcaC05g27755 Brassica carinata HOM05D004890 ORTHO05D005869 2.3e-24 119.8 55 96.4
Glyma.14G115300 Glycine max HOM05D004890 ORTHO05D005869 1.7e-22 113.6 86 60.5
MD10G1117600 Malus domestica HOM05D004890 ORTHO05D005869 2.8e-22 112.8 109 50.5
CBR_g39037 Chara braunii HOM05D004890 ORTHO05D005869 4.1e-21 109.0 172 36.0
RcHm_v2.0_Chr6g0245361 Rosa chinensis HOM05D004890 ORTHO05D005869 3.5e-20 105.9 168 38.1
C01p08960 Brassica napus HOM05D004890 ORTHO05D005869 4.5e-20 105.5 51 92.2
SEGI_39969 Sequoiadendron giganteum HOM05D004890 ORTHO05D005869 4.5e-20 105.5 124 45.2
Psat7g017880 Pisum sativum HOM05D001673 ORTHO05D029933 8.6e-19 101.3 181 31.5
RcHm_v2.0_Chr6g0244961 Rosa chinensis HOM05D004890 ORTHO05D005869 3.4e-15 89.4 162 35.2
RcHm_v2.0_Chr6g0244921 Rosa chinensis HOM05D004890 ORTHO05D005869 1.6e-12 80.5 117 45.3
RcHm_v2.0_Chr6g0245441 Rosa chinensis HOM05D004890 ORTHO05D005869 1.6e-12 80.5 290 27.9
RcHm_v2.0_Chr6g0245541 Rosa chinensis HOM05D004890 ORTHO05D005869 1.0e-11 77.8 127 35.4
RcHm_v2.0_Chr6g0244901 Rosa chinensis HOM05D004890 ORTHO05D005869 2.5e-10 73.2 68 51.5
MD10G1117400 Malus domestica HOM05D004890 ORTHO05D005869 5.6e-10 72.0 79 43.0
RcHm_v2.0_Chr6g0244971 Rosa chinensis HOM05D004890 ORTHO05D005869 2.1e-09 70.1 275 27.3
RcHm_v2.0_Chr6g0244891 Rosa chinensis HOM05D004890 ORTHO05D005869 4.7e-09 68.9 87 42.5
C04p46920 Brassica napus HOM05D017930 ORTHO05D033499 3.4e-07 62.8 33 81.8
BolC4t26285H Brassica oleracea HOM05D017930 ORTHO05D033499 3.4e-07 62.8 33 81.8
BraA03t15490Z Brassica rapa HOM05D017930 ORTHO05D033499 5.8e-07 62.0 31 87.1
Psat2g036680 Pisum sativum HOM05D004890 ORTHO05D005869 5.8e-07 62.0 98 40.8
MD10G1117500 Malus domestica HOM05D004890 ORTHO05D005869 1.7e-06 60.5 316 25.3


User provided reference genes

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