Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung04402 Brassica carinata HOM05D004743 ORTHO05D005698 3.9e-111 404.8 207 100.0
BcaB06g29229 Brassica carinata HOM05D004743 ORTHO05D005698 2.5e-86 322.4 194 87.1
BcaC02g12469 Brassica carinata HOM05D004743 ORTHO05D005698 4.8e-85 318.2 161 100.0
A05p02780 Brassica napus HOM05D004743 ORTHO05D005698 4.8e-85 318.2 161 100.0
C04p03370 Brassica napus HOM05D004743 ORTHO05D005698 4.8e-85 318.2 161 100.0
BraA05t19270Z Brassica rapa HOM05D004743 ORTHO05D005698 1.4e-84 316.6 161 99.4
A04p32050 Brassica napus HOM05D004743 ORTHO05D005698 2.9e-82 308.9 158 98.1
BcaC02g07257 Brassica carinata HOM05D004743 ORTHO05D005698 3.8e-82 308.5 161 96.3
C04p69570 Brassica napus HOM05D004743 ORTHO05D005698 3.8e-82 308.5 161 96.3
BolC4t28455H Brassica oleracea HOM05D004743 ORTHO05D005698 3.8e-82 308.5 161 96.3
BraA04t18662Z Brassica rapa HOM05D004743 ORTHO05D005698 6.5e-82 307.8 158 97.5
CARHR137250 Cardamine hirsuta HOM05D004743 ORTHO05D005698 1.4e-79 300.1 161 95.0
Sp4g24390 Schrenkiella parvula HOM05D004743 ORTHO05D005698 1.4e-79 300.1 161 95.0
AT2G42210 Arabidopsis thaliana HOM05D004743 ORTHO05D005698 5.1e-79 298.1 161 93.2
Thhalv10017352m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 8.8e-79 297.4 161 93.8
AL4G40570 Arabidopsis lyrata HOM05D004743 ORTHO05D005698 3.3e-78 295.4 161 91.9
Carub.0004s2455 Capsella rubella HOM05D004743 ORTHO05D005698 1.1e-76 290.4 161 91.3
Aa31LG1G24060 Aethionema arabicum HOM05D004743 ORTHO05D005698 2.6e-75 285.8 162 87.7
Thhalv10006285m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 2.6e-75 285.8 161 88.2
Sp5g04820 Schrenkiella parvula HOM05D004743 ORTHO05D005698 3.4e-75 285.4 161 88.2
THA.LOC104824464 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 7.2e-73 277.7 161 86.3
Aa31LG10G12610 Aethionema arabicum HOM05D004743 ORTHO05D005698 9.4e-73 277.3 172 79.1
Rhsim03G0009100 Rhododendron simsii HOM05D004743 ORTHO05D005698 7.7e-67 257.7 151 81.5
vmacro07935 Vaccinium macrocarpon HOM05D004743 ORTHO05D005698 8.5e-66 254.2 153 79.7
FvH4_6g22680 Fragaria vesca HOM05D004743 ORTHO05D005698 1.1e-65 253.8 161 75.8
FAN02G0944 Fragaria x ananassa HOM05D004743 ORTHO05D005698 1.1e-65 253.8 161 75.8
FAN05G2002 Fragaria x ananassa HOM05D004743 ORTHO05D005698 1.1e-65 253.8 161 75.8
FAN09G0554 Fragaria x ananassa HOM05D004743 ORTHO05D005698 1.1e-65 253.8 161 75.8
FAN14G2026 Fragaria x ananassa HOM05D004743 ORTHO05D005698 1.1e-65 253.8 161 75.8
FAN14G4474 Fragaria x ananassa HOM05D004743 ORTHO05D005698 1.1e-65 253.8 161 75.8
RcHm_v2.0_Chr3g0480261 Rosa chinensis HOM05D004743 ORTHO05D005698 1.5e-65 253.4 161 76.4
MD14G1060700 Malus domestica HOM05D004743 ORTHO05D005698 1.6e-64 250.0 161 75.2
Cc00_g14600 Coffea canephora HOM05D004743 ORTHO05D005698 2.1e-64 249.6 160 75.0
Prupe.7G073800 Prunus persica HOM05D004743 ORTHO05D005698 2.1e-64 249.6 161 74.5
CiPaw.10G028000 Carya illinoinensis HOM05D004743 ORTHO05D005698 2.7e-64 249.2 150 80.0
Haze_19962 Corylus avellana HOM05D004743 ORTHO05D005698 2.7e-64 249.2 159 74.8
MD12G1061000 Malus domestica HOM05D004743 ORTHO05D005698 3.6e-64 248.8 161 73.9
Lju124A30G9 Lonicera japonica HOM05D004743 ORTHO05D005698 4.7e-64 248.4 150 78.0
CANSAT64G2667 Cannabis sativa HOM05D004743 ORTHO05D005698 8.0e-64 247.7 161 74.5
THA.LOC104802456 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 8.0e-64 247.7 143 85.3
EL10Ac3g06947 Beta vulgaris HOM05D004743 ORTHO05D005698 1.4e-63 246.9 159 73.6
CSS0027207 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 1.4e-63 246.9 150 78.7
CSS0048559 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 1.4e-63 246.9 150 78.7
Cc06_g22060 Coffea canephora HOM05D004743 ORTHO05D005698 1.4e-63 246.9 159 74.2
Ciclev10012973m.g Citrus clementina HOM05D004743 ORTHO05D005698 1.8e-63 246.5 161 73.9
Sed0004669 Sechium edule HOM05D004743 ORTHO05D005698 4.0e-63 245.4 159 76.1
Thecc.05G168500 Theobroma cacao HOM05D004743 ORTHO05D005698 5.2e-63 245.0 161 73.3
Sc13g0002130 Simmondsia chinensis HOM05D004743 ORTHO05D005698 6.7e-63 244.6 161 74.5
COL.COLO4_36134 Corchorus olitorius HOM05D004743 ORTHO05D005698 8.8e-63 244.2 161 74.5
Cpa.g.sc85.89 Carica papaya HOM05D004743 ORTHO05D005698 1.2e-62 243.8 161 73.3
Sed0015240 Sechium edule HOM05D004743 ORTHO05D005698 2.0e-62 243.0 159 74.2
Hund19191 Selenicereus undatus HOM05D004743 ORTHO05D005698 2.0e-62 243.0 158 74.7
CDE07G0719 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 2.6e-62 242.7 150 77.3
Dinv14277 Davidia involucrata HOM05D004743 ORTHO05D005698 5.7e-62 241.5 150 74.0
Potri.006G059300 Populus trichocarpa HOM05D004743 ORTHO05D005698 5.7e-62 241.5 161 72.0
PGR142G2650 Punica granatum HOM05D004743 ORTHO05D005698 7.5e-62 241.1 159 73.0
TAR623G0239 Trochodendron aralioides HOM05D004743 ORTHO05D005698 7.5e-62 241.1 155 73.5
PGSC0003DMG400011432 Solanum tuberosum HOM05D004743 ORTHO05D005698 1.3e-61 240.4 158 74.7
AUR62024326 Chenopodium quinoa HOM05D004743 ORTHO05D005698 1.7e-61 240.0 159 72.3
Gorai.006G141500 Gossypium raimondii HOM05D004743 ORTHO05D005698 1.7e-61 240.0 158 70.9
Oeu033746.1 Olea europaea HOM05D004743 ORTHO05D005698 1.7e-61 240.0 161 72.0
PSO339G6088 Papaver somniferum HOM05D004743 ORTHO05D005698 1.7e-61 240.0 155 75.5
PSO384G3106 Papaver somniferum HOM05D004743 ORTHO05D005698 1.7e-61 240.0 155 75.5
TAR633G2476 Trochodendron aralioides HOM05D004743 ORTHO05D005698 2.2e-61 239.6 155 72.3
Manes.08G045000 Manihot esculenta HOM05D004743 ORTHO05D005698 2.8e-61 239.2 161 72.0
TAR633G1605 Trochodendron aralioides HOM05D004743 ORTHO05D005698 2.8e-61 239.2 155 72.9
Solyc10g078690.3 Solanum lycopersicum HOM05D004743 ORTHO05D005698 4.8e-61 238.4 163 72.4
Actinidia09383 Actinidia chinensis HOM05D000570 ORTHO05D005344 6.3e-61 238.0 161 72.0
HanXRQChr10g0295691 Helianthus annuus HOM05D004743 ORTHO05D005698 6.3e-61 238.0 161 72.0
Sopen10g029310 Solanum pennellii HOM05D004743 ORTHO05D005698 6.3e-61 238.0 158 74.1
Gohir.A09G126700 Gossypium hirsutum HOM05D004743 ORTHO05D005698 8.2e-61 237.7 156 71.2
Manes.09G032100 Manihot esculenta HOM05D004743 ORTHO05D005698 8.2e-61 237.7 161 71.4
AUR62012065 Chenopodium quinoa HOM05D004743 ORTHO05D005698 1.1e-60 237.3 159 71.7
Gohir.A01G192000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 1.1e-60 237.3 159 70.4
Gohir.D01G178000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 1.8e-60 236.5 156 71.8
Gorai.002G225100 Gossypium raimondii HOM05D004743 ORTHO05D005698 1.8e-60 236.5 156 71.8
MSTRG.19893 Avicennia marina HOM05D004743 ORTHO05D005698 2.4e-60 236.1 155 74.8
Hma1.2p1_0005F.1_g004310 Hydrangea macrophylla HOM05D004743 ORTHO05D005698 2.4e-60 236.1 160 71.2
DCAR_013558 Daucus carota HOM05D004743 ORTHO05D005698 4.1e-60 235.3 158 74.1
Duzib106G0699 Durio zibethinus HOM05D004743 ORTHO05D005698 4.1e-60 235.3 158 70.3
Gohir.D09G123248 Gossypium hirsutum HOM05D004743 ORTHO05D005698 4.1e-60 235.3 158 69.6
CAN.G1161.21 Capsicum annuum HOM05D004743 ORTHO05D005698 9.1e-60 234.2 156 74.4
MELO3C009644.2 Cucumis melo HOM05D004743 ORTHO05D005698 9.1e-60 234.2 159 71.1
HanXRQChr15g0491311 Helianthus annuus HOM05D004743 ORTHO05D005698 9.1e-60 234.2 161 70.8
Nitab4.5_0001538g0070 Nicotiana tabacum HOM05D004743 ORTHO05D005698 9.1e-60 234.2 158 74.1
Lsat_1_v5_gn_9_28001 Lactuca sativa HOM05D004743 ORTHO05D005698 1.6e-59 233.4 158 72.2
MBI04_g27127_MAGBIO Magnolia biondii HOM05D004743 ORTHO05D005698 1.6e-59 233.4 150 74.7
ECA247G0571 Erigeron canadensis HOM05D004743 ORTHO05D005698 2.7e-59 232.6 158 72.2
Nitab4.5_0000991g0030 Nicotiana tabacum HOM05D004743 ORTHO05D005698 3.5e-59 232.3 161 72.0
CsaV3_3G039010 Cucumis sativus L. HOM05D004743 ORTHO05D005698 4.5e-59 231.9 159 69.8
SGA_v2.0_scaffold69G23079 Striga asiatica HOM05D004743 ORTHO05D005698 1.0e-58 230.7 159 69.8
Aqoxy2G00062 Aquilegia oxysepala HOM05D004743 ORTHO05D005698 1.3e-58 230.3 155 71.6
Ah.13g076070 Amaranthus hybridus HOM05D004743 ORTHO05D005698 2.2e-58 229.6 159 71.7
Peaxi162Scf00003g04210 Petunia axillaris HOM05D004743 ORTHO05D005698 3.8e-58 228.8 158 70.9
GSVIVG01033524001 Vitis vinifera HOM05D004743 ORTHO05D005698 5.0e-58 228.4 166 66.9
Duzib128G1008 Durio zibethinus HOM05D004743 ORTHO05D005698 3.2e-57 225.7 155 70.3
ATR0605G135 Amborella trichopoda HOM05D004743 ORTHO05D005698 1.6e-56 223.4 150 68.0
Ca_08506_v3 Cicer arietinum L. HOM05D004743 ORTHO05D005698 1.6e-56 223.4 150 71.3
Psat3g069720 Pisum sativum HOM05D004743 ORTHO05D005698 8.0e-56 221.1 150 71.3
CDE04G2796 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 1.0e-55 220.7 134 78.4
Migut.J01816 Erythranthe guttata HOM05D004743 ORTHO05D005698 1.0e-55 220.7 150 69.3
arahy.Tifrunner.gnm1.ann1.2GY28N Arachis hypogaea HOM05D000570 ORTHO05D005344 1.4e-55 220.3 160 69.4
arahy.Tifrunner.gnm1.ann1.CB7VX4 Arachis hypogaea HOM05D004743 ORTHO05D005344 1.4e-55 220.3 160 69.4
Lalb_Chr04g0259631 Lupinus albus HOM05D004743 ORTHO05D005698 1.4e-55 220.3 161 66.5
Glyma.19G145900 Glycine max HOM05D004743 ORTHO05D005698 2.3e-55 219.5 162 67.3
Lj1g0027895 Lotus japonicus HOM05D004743 ORTHO05D005344 3.0e-55 219.2 158 67.1
VMungo1383G0120 Vigna mungo HOM05D004743 ORTHO05D005698 4.0e-55 218.8 162 66.0
Sabra06G0042700 Salix brachista HOM05D004743 ORTHO05D005698 6.8e-55 218.0 210 56.2
Phvul.001G140800 Phaseolus vulgaris HOM05D004743 ORTHO05D005698 8.8e-55 217.6 162 66.7
Glyma.03G142900 Glycine max HOM05D004743 ORTHO05D005698 1.2e-54 217.2 162 66.0
unitig_749.g14140 Utricularia gibba HOM05D004743 ORTHO05D005698 2.0e-54 216.5 186 58.1
Cfa016899 Carpinus fangiana HOM05D006381 ORTHO05D008523 5.7e-54 214.9 137 75.2
HPP92_001833 Vanilla planifolia HOM05D004743 ORTHO05D005698 1.3e-53 213.8 155 68.4
Zm00001eb252780 Zea mays HOM05D004743 ORTHO05D005698 2.4e-52 209.5 146 69.9
Lalb_Chr18g0047741 Lupinus albus HOM05D004743 ORTHO05D005698 2.0e-51 206.5 145 70.3
Os02g0717300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 3.5e-51 205.7 146 67.1
Atru.chr8.1050 Acer truncatum HOM05D004743 ORTHO05D005698 7.7e-51 204.5 125 77.6
ClCG10G017380 Citrullus lanatus HOM05D004743 ORTHO05D005698 1.0e-50 204.1 249 47.8
BolC4t21974H Brassica oleracea HOM05D004743 ORTHO05D005698 9.5e-49 197.6 101 100.0
TWI77G0677 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 2.1e-48 196.4 162 63.6
Nn7g36049 Nelumbo nucifera HOM05D004743 ORTHO05D005698 1.0e-47 194.1 122 77.0
TWI53G0547 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 3.7e-45 185.7 163 58.3
unitig_26.g9039 Utricularia gibba HOM05D004743 ORTHO05D005698 6.3e-45 184.9 210 48.6
C04p16200 Brassica napus HOM05D004743 ORTHO05D005698 1.4e-44 183.7 138 70.3
SEGI_22128 Sequoiadendron giganteum HOM05D004743 ORTHO05D005698 1.8e-44 183.3 154 56.5
QL07p023149 Quercus lobata HOM05D004743 ORTHO05D005698 3.1e-44 182.6 110 78.2
TPR.G13232 Trifolium pratense HOM05D004743 ORTHO05D005698 1.3e-42 177.2 124 69.4
Oeu008114.1 Olea europaea HOM05D004743 ORTHO05D005698 1.0e-39 167.5 298 36.9
SalBow6G0397 Salvia bowleyana HOM05D004743 ORTHO05D005698 4.0e-39 165.6 188 47.9
BcaC03g17937 Brassica carinata HOM05D004743 ORTHO05D005698 6.4e-37 158.3 148 66.9
C04p16220 Brassica napus HOM05D004743 ORTHO05D005698 2.4e-36 156.4 117 72.6
Hund19190 Selenicereus undatus HOM05D004743 ORTHO05D005698 2.4e-36 156.4 143 58.7
Mapoly0011s0060 Marchantia polymorpha HOM05D004743 ORTHO05D005698 6.0e-35 151.8 155 51.0
Pp3c6_9862 Physcomitrium patens HOM05D004743 ORTHO05D005698 3.3e-33 146.0 149 51.0
Pp3c5_22310 Physcomitrium patens HOM05D004743 ORTHO05D005698 7.3e-33 144.8 149 50.3
CiPaw.09G032100 Carya illinoinensis HOM05D004743 ORTHO05D005698 2.3e-31 139.8 90 74.4
THA.LOC104824466 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 2.6e-30 136.3 148 52.7
CBR_g32607 Chara braunii HOM05D004743 ORTHO05D005698 5.8e-30 135.2 150 46.7
Eucgr.A02439 Eucalyptus grandis HOM05D004743 ORTHO05D005698 6.4e-29 131.7 109 61.5
C09p44920 Brassica napus HOM05D004743 ORTHO05D005698 3.2e-28 129.4 85 75.3
AagrBONN_evm.TU.Sc2ySwM_362.1495 Anthoceros agrestis HOM05D004743 ORTHO05D005698 2.3e-26 123.2 143 46.2
C02p59940 Brassica napus HOM05D004743 ORTHO05D005698 1.5e-25 120.6 103 69.9
BcaC04g22765 Brassica carinata HOM05D004743 ORTHO05D005698 1.2e-24 117.5 78 79.5
Os09g0279300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 1.2e-22 110.9 126 43.7
arahy.Tifrunner.gnm1.ann1.MK9Y65 Arachis hypogaea HOM05D004743 ORTHO05D005698 3.2e-20 102.8 72 68.1
arahy.Tifrunner.gnm1.ann1.W4Y9B5 Arachis hypogaea HOM05D004743 ORTHO05D005698 3.2e-20 102.8 72 68.1
arahy.Tifrunner.gnm1.ann1.GN7FJD Arachis hypogaea HOM05D004743 ORTHO05D005698 7.1e-20 101.7 65 72.3
arahy.Tifrunner.gnm1.ann1.YRY7W4 Arachis hypogaea HOM05D004743 ORTHO05D005698 9.2e-20 101.3 65 72.3
arahy.Tifrunner.gnm1.ann1.HF75RM Arachis hypogaea HOM05D004743 ORTHO05D005698 1.7e-18 97.1 64 71.9
Zm00001eb308440 Zea mays HOM05D004743 ORTHO05D005698 6.6e-18 95.1 127 40.9
arahy.Tifrunner.gnm1.ann1.L5I9G2 Arachis hypogaea HOM05D004743 ORTHO05D005698 2.5e-17 93.2 64 68.8
PSO063G6118 Papaver somniferum HOM05D004743 ORTHO05D005698 5.1e-10 68.9 146 34.9
AT3G57900 Arabidopsis thaliana HOM05D004743 ORTHO05D005698 2.5e-09 66.6 96 43.8
SMO116G0085 Selaginella moellendorffii HOM05D004743 ORTHO05D005698 5.6e-09 65.5 145 30.3
arahy.Tifrunner.gnm1.ann1.1ZE97X Arachis hypogaea HOM05D004743 ORTHO05D005698 2.0e-06 57.0 45 60.0
arahy.Tifrunner.gnm1.ann1.JW2HXV Arachis hypogaea HOM05D004743 ORTHO05D005698 5.8e-06 55.5 45 57.8


User provided reference genes

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