Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung04357 Brassica carinata HOM05D006877 ORTHO05D000761 7.6e-68 260.4 132 100.0
Sp2g20510 Schrenkiella parvula HOM05D006877 ORTHO05D008735 6.9e-45 184.1 107 85.0
Thhalv10003569m.g Eutrema salsugineum HOM05D006877 ORTHO05D008735 1.8e-29 132.9 77 85.7
Carub.0006s2526 Capsella rubella HOM05D006877 ORTHO05D008735 7.9e-25 117.5 80 73.8
Aa31LG11G9010 Aethionema arabicum HOM05D006877 ORTHO05D008735 9.1e-21 104.0 80 67.5
CARHR185880 Cardamine hirsuta HOM05D006877 ORTHO05D008735 5.9e-20 101.3 73 71.2
Lj1A1033T71 Lonicera japonica HOM05D006877 ORTHO05D008735 4.5e-12 75.1 141 34.8
AUR62003179 Chenopodium quinoa HOM05D001563 ORTHO05D001956 4.2e-10 68.6 121 32.2
PGSC0003DMG400015467 Solanum tuberosum HOM05D000891 ORTHO05D000761 4.2e-10 68.6 125 28.0
Dinv26815 Davidia involucrata HOM05D000891 ORTHO05D000761 1.2e-09 67.0 125 28.0
Solyc02g062910.3 Solanum lycopersicum HOM05D000891 ORTHO05D000761 2.1e-09 66.2 125 27.2
BolC7t44594H Brassica oleracea HOM05D006877 ORTHO05D008735 3.6e-09 65.5 41 78.0
Solyc02g085650.4 Solanum lycopersicum HOM05D001985 ORTHO05D000761 3.6e-09 65.5 121 27.3
Sopen02g013930 Solanum pennellii HOM05D000891 ORTHO05D000761 3.6e-09 65.5 125 27.2
Sopen02g030320 Solanum pennellii HOM05D000891 ORTHO05D000761 3.6e-09 65.5 121 27.3
PGSC0003DMG400040010 Solanum tuberosum HOM05D000891 ORTHO05D000761 3.6e-09 65.5 121 28.1
CAN.G53.43 Capsicum annuum HOM05D000891 ORTHO05D000761 6.1e-09 64.7 125 26.4
Cc07_g09260 Coffea canephora HOM05D000891 ORTHO05D000761 6.1e-09 64.7 129 28.7
EL10Ac6g14919 Beta vulgaris HOM05D000891 ORTHO05D000761 8.0e-09 64.3 125 28.8
Nitab4.5_0003410g0050 Nicotiana tabacum HOM05D000891 ORTHO05D000761 1.0e-08 63.9 125 27.2
Lj2P449T26 Lonicera japonica HOM05D000891 ORTHO05D000761 1.8e-08 63.2 124 27.4
Nitab4.5_0000628g0030 Nicotiana tabacum HOM05D000891 ORTHO05D000761 1.8e-08 63.2 125 27.2
PGR119G1317 Punica granatum HOM05D000891 ORTHO05D000761 5.2e-08 61.6 124 29.0
Sc07g0000240 Simmondsia chinensis HOM05D000891 ORTHO05D000761 5.2e-08 61.6 130 29.2
CiPaw.01G035200 Carya illinoinensis HOM05D000891 ORTHO05D000761 6.7e-08 61.2 129 25.6
CSS0037549 Camellia sinensis var. sinensis HOM05D000891 ORTHO05D000761 8.8e-08 60.8 125 28.8
Dinv01391 Davidia involucrata HOM05D002479 ORTHO05D002675 8.8e-08 60.8 129 24.8
Peaxi162Scf00008g03911 Petunia axillaris HOM05D000891 ORTHO05D000761 8.8e-08 60.8 125 25.6
arahy.Tifrunner.gnm1.ann1.CUF5YV Arachis hypogaea HOM05D002479 ORTHO05D002675 1.5e-07 60.1 118 28.8
MD02G1151200 Malus domestica HOM05D000891 ORTHO05D000761 1.5e-07 60.1 129 26.4
Prupe.7G151800 Prunus persica HOM05D000891 ORTHO05D000761 1.5e-07 60.1 129 24.8
AT2G18520 Arabidopsis thaliana HOM05D000891 ORTHO05D000761 2.0e-07 59.7 125 27.2
Sp3g31980 Schrenkiella parvula HOM05D000891 ORTHO05D000761 2.0e-07 59.7 126 25.4
arahy.Tifrunner.gnm1.ann1.K92JXF Arachis hypogaea HOM05D002479 ORTHO05D002675 2.6e-07 59.3 118 28.8
MD15G1265700 Malus domestica HOM05D000891 ORTHO05D000761 2.6e-07 59.3 129 25.6
CARHR109130 Cardamine hirsuta HOM05D000891 ORTHO05D000761 4.4e-07 58.5 125 27.2
DCAR_025928 Daucus carota HOM05D000891 ORTHO05D000761 4.4e-07 58.5 121 27.3
Haze_15114 Corylus avellana HOM05D000891 ORTHO05D000761 5.7e-07 58.2 128 25.8
Peaxi162Scf00515g00029 Petunia axillaris HOM05D000891 ORTHO05D000761 7.5e-07 57.8 105 30.5
HPP92_006127 Vanilla planifolia HOM05D002479 ORTHO05D002675 7.5e-07 57.8 120 31.7
Atru.chr3.547 Acer truncatum HOM05D000891 ORTHO05D000761 9.7e-07 57.4 129 24.0
Nn3g18645 Nelumbo nucifera HOM05D000300 ORTHO05D000383 9.7e-07 57.4 126 31.0
Cpa.g.sc353.5 Carica papaya HOM05D000891 ORTHO05D000761 1.3e-06 57.0 124 25.0
AagrBONN_evm.TU.Sc2ySwM_362.70 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.2e-06 56.2 123 30.1
DCAR_017247 Daucus carota HOM05D000891 ORTHO05D000761 2.2e-06 56.2 124 26.6
AL3G51870 Arabidopsis lyrata HOM05D000891 ORTHO05D000761 2.8e-06 55.8 126 25.4
BcaB07g31660 Brassica carinata HOM05D000891 ORTHO05D000761 2.8e-06 55.8 126 24.6
Psat4g078640 Pisum sativum HOM05D002244 ORTHO05D002269 2.8e-06 55.8 123 30.1
COL.COLO4_22110 Corchorus olitorius HOM05D000891 ORTHO05D000761 3.7e-06 55.5 133 27.8
Hma1.2p1_3153F.1_g333300 Hydrangea macrophylla HOM05D003056 ORTHO05D003422 3.7e-06 55.5 142 26.8
MD11G1162400 Malus domestica HOM05D002646 ORTHO05D002782 3.7e-06 55.5 125 25.6
SMO147G0035 Selaginella moellendorffii HOM05D025233 ORTHO05D026635 4.8e-06 55.1 124 24.2
Lsat_1_v5_gn_3_29801 Lactuca sativa HOM05D000001 ORTHO05D009432 8.2e-06 54.3 120 30.8
MBI04_g30800_MAGBIO Magnolia biondii HOM05D005862 ORTHO05D007731 8.2e-06 54.3 127 25.2
SGA_v2.0_scaffold33G13374 Striga asiatica HOM05D000891 ORTHO05D000761 8.2e-06 54.3 121 28.1
Thecc.01G038900 Theobroma cacao HOM05D000891 ORTHO05D000761 8.2e-06 54.3 134 26.9


User provided reference genes

Program Settings