Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung04286 Brassica carinata HOM05D000411 ORTHO05D000310 1.0e-40 169.9 100 100.0
BcaNung04287 Brassica carinata HOM05D000411 ORTHO05D090686 1.0e-40 169.9 100 100.0
BcaC09g51656 Brassica carinata HOM05D000411 ORTHO05D090636 1.6e-38 162.5 100 96.0
BolC1t01057H Brassica oleracea HOM05D000411 ORTHO05D000310 1.6e-38 162.5 100 96.0
Thhalv10025069m.g Eutrema salsugineum HOM05D000411 ORTHO05D000310 2.4e-37 158.7 100 92.0
Sp7g26520 Schrenkiella parvula HOM05D000411 ORTHO05D000310 5.8e-36 154.1 100 90.0
BcaC07g38339 Brassica carinata HOM05D000411 ORTHO05D000310 9.9e-36 153.3 100 88.0
C08p10930 Brassica napus HOM05D000411 ORTHO05D000310 9.9e-36 153.3 100 88.0
A03p58280 Brassica napus HOM05D000411 ORTHO05D000310 3.8e-35 151.4 100 89.0
C07p56310 Brassica napus HOM05D000411 ORTHO05D000310 3.8e-35 151.4 100 89.0
BolC7t46110H Brassica oleracea HOM05D000411 ORTHO05D000310 3.8e-35 151.4 100 89.0
A01p09360 Brassica napus HOM05D000411 ORTHO05D000310 8.4e-35 150.2 100 91.0
C01p10930 Brassica napus HOM05D000411 ORTHO05D000310 8.4e-35 150.2 100 91.0
BraA01t00882Z Brassica rapa HOM05D000411 ORTHO05D000310 8.4e-35 150.2 100 91.0
CARHR236320 Cardamine hirsuta HOM05D000411 ORTHO05D000310 8.4e-35 150.2 100 87.0
AT4G28540 Arabidopsis thaliana HOM05D000411 ORTHO05D000310 3.2e-34 148.3 100 88.0
AL7G24010 Arabidopsis lyrata HOM05D000411 ORTHO05D000310 2.1e-33 145.6 100 87.0
Carub.0007s1214 Capsella rubella HOM05D000411 ORTHO05D000310 4.6e-33 144.4 100 85.0
BraA08t33959Z Brassica rapa HOM05D000411 ORTHO05D000310 1.0e-32 143.3 101 83.2
BraA03t14891Z Brassica rapa HOM05D000411 ORTHO05D000310 1.6e-30 136.0 102 82.4
BcaB03g12579 Brassica carinata HOM05D000411 ORTHO05D000310 6.9e-29 130.6 102 82.4
BolC8t48765H Brassica oleracea HOM05D000411 ORTHO05D001673 6.4e-27 124.0 85 84.7
BcaC07g38342 Brassica carinata HOM05D001196 ORTHO05D001673 3.6e-22 108.2 91 78.0
Aa31LG2G21860 Aethionema arabicum HOM05D000411 ORTHO05D000310 6.9e-21 104.0 106 66.0
Cpa.g.sc165.23 Carica papaya HOM05D000411 ORTHO05D000310 1.4e-18 96.3 98 64.3
BcaC06g32612 Brassica carinata HOM05D000411 ORTHO05D000310 2.5e-15 85.5 103 60.2
THA.LOC104815966 Tarenaya hassleriana HOM05D000411 ORTHO05D000310 2.2e-11 72.4 101 54.5
TWI75G1326 Tripterygium wilfordii HOM05D000411 ORTHO05D000310 1.4e-10 69.7 98 57.1
BcaC07g38340 Brassica carinata HOM05D001196 ORTHO05D001673 1.9e-10 69.3 44 84.1
THA.LOC104808634 Tarenaya hassleriana HOM05D000411 ORTHO05D000310 1.2e-09 66.6 95 51.6
Lalb_Chr01g0019601 Lupinus albus HOM05D000411 ORTHO05D000310 1.6e-09 66.2 99 54.5
CiPaw.03G266800 Carya illinoinensis HOM05D000411 ORTHO05D000310 4.6e-09 64.7 98 53.1
Ciclev10020024m.g Citrus clementina HOM05D000411 ORTHO05D000310 6.0e-09 64.3 98 54.1
Prupe.1G040700 Prunus persica HOM05D000411 ORTHO05D000310 1.0e-08 63.5 95 53.7
Sp1g02790 Schrenkiella parvula HOM05D000411 ORTHO05D000310 1.0e-08 63.5 103 53.4
Aa31LG5G3170 Aethionema arabicum HOM05D000411 ORTHO05D000310 2.3e-08 62.4 101 49.5
Duzib151G0021 Durio zibethinus HOM05D000411 ORTHO05D000310 3.0e-08 62.0 95 51.6
Manes.12G034100 Manihot esculenta HOM05D000411 ORTHO05D000310 3.0e-08 62.0 97 50.5
Haze_11398 Corylus avellana HOM05D000411 ORTHO05D000310 3.9e-08 61.6 94 51.1
Cfa022944 Carpinus fangiana HOM05D000411 ORTHO05D000310 5.1e-08 61.2 94 51.1
Ciclev10004925m.g Citrus clementina HOM05D000411 ORTHO05D000310 5.1e-08 61.2 95 50.5
TAR362G0015 Trochodendron aralioides HOM05D000411 ORTHO05D000310 6.7e-08 60.8 95 55.8
AUR62002152 Chenopodium quinoa HOM05D000411 ORTHO05D000310 8.7e-08 60.5 94 54.3
Lj1g0022446 Lotus japonicus HOM05D000411 ORTHO05D000310 1.1e-07 60.1 98 54.1
Nn1g02825 Nelumbo nucifera HOM05D000411 ORTHO05D000310 1.1e-07 60.1 95 53.7
Lj6C634G5 Lonicera japonica HOM05D000411 ORTHO05D000310 1.9e-07 59.3 94 54.3
Aqoxy5G00205 Aquilegia oxysepala HOM05D000411 ORTHO05D000310 2.5e-07 58.9 94 51.1
arahy.Tifrunner.gnm1.ann1.2G4T7X Arachis hypogaea HOM05D000411 ORTHO05D000310 2.5e-07 58.9 97 49.5
arahy.Tifrunner.gnm1.ann1.ND79ZZ Arachis hypogaea HOM05D000411 ORTHO05D000310 2.5e-07 58.9 97 49.5
Potri.005G226900 Populus trichocarpa HOM05D000411 ORTHO05D000310 2.5e-07 58.9 97 47.4
Thecc.01G255000 Theobroma cacao HOM05D000411 ORTHO05D000310 2.5e-07 58.9 99 53.5
AUR62015555 Chenopodium quinoa HOM05D000411 ORTHO05D000310 3.3e-07 58.5 94 53.2
Gohir.A02G039800 Gossypium hirsutum HOM05D000411 ORTHO05D000310 5.7e-07 57.8 95 47.4
Lsat_1_v5_gn_9_10560 Lactuca sativa HOM05D000411 ORTHO05D000310 5.7e-07 57.8 98 52.0
Nn3g19699 Nelumbo nucifera HOM05D000411 ORTHO05D000310 5.7e-07 57.8 95 51.6
ClCG07G001180 Citrullus lanatus HOM05D000411 ORTHO05D000310 7.4e-07 57.4 99 50.5
COL.COLO4_04017 Corchorus olitorius HOM05D000411 ORTHO05D000310 7.4e-07 57.4 99 55.6
COL.COLO4_15890 Corchorus olitorius HOM05D000411 ORTHO05D000310 7.4e-07 57.4 95 48.4
Gorai.005G050700 Gossypium raimondii HOM05D000411 ORTHO05D000310 7.4e-07 57.4 95 48.4
Sabra02G0029200 Salix brachista HOM05D000411 ORTHO05D000310 7.4e-07 57.4 97 47.4
Carub.0001s0308 Capsella rubella HOM05D000411 ORTHO05D000310 9.6e-07 57.0 100 50.0
Carub.0008s0443 Capsella rubella HOM05D000411 ORTHO05D000310 9.6e-07 57.0 107 51.4
CANSAT01G1222 Cannabis sativa HOM05D000411 ORTHO05D000310 1.3e-06 56.6 98 48.0
FvH4_2g21160 Fragaria vesca HOM05D000411 ORTHO05D000310 1.3e-06 56.6 98 51.0
arahy.Tifrunner.gnm1.ann1.J2ZA2N Arachis hypogaea HOM05D000411 ORTHO05D000310 1.6e-06 56.2 95 51.6
CSS0044423 Camellia sinensis var. sinensis HOM05D000411 ORTHO05D000310 1.6e-06 56.2 95 52.6
Lsat_1_v5_gn_3_116780 Lactuca sativa HOM05D000411 ORTHO05D000310 1.6e-06 56.2 90 54.4
Prupe.8G220400 Prunus persica HOM05D000411 ORTHO05D000310 1.6e-06 56.2 100 47.0
TPR.G9207 Trifolium pratense HOM05D000411 ORTHO05D000310 1.6e-06 56.2 98 52.0
TAR636G2009 Trochodendron aralioides HOM05D000411 ORTHO05D000310 1.6e-06 56.2 96 52.1
CiPaw.02G110900 Carya illinoinensis HOM05D000411 ORTHO05D000310 2.1e-06 55.8 95 52.6
ECA240G3699 Erigeron canadensis HOM05D000411 ORTHO05D000310 2.1e-06 55.8 97 53.6
Gohir.A07G150000 Gossypium hirsutum HOM05D000411 ORTHO05D000310 2.1e-06 55.8 99 53.5
Potri.002G036000 Populus trichocarpa HOM05D000411 ORTHO05D000310 2.1e-06 55.8 97 46.4
VMungo1383G2580 Vigna mungo HOM05D000411 ORTHO05D000310 2.1e-06 55.8 98 50.0
Gohir.D02G046000 Gossypium hirsutum HOM05D000411 ORTHO05D000310 2.8e-06 55.5 95 47.4
Lj3C692G12 Lonicera japonica HOM05D000411 ORTHO05D000310 2.8e-06 55.5 97 51.5
Manes.13G036000 Manihot esculenta HOM05D000411 ORTHO05D000310 2.8e-06 55.5 97 46.4
QL09p039737 Quercus lobata HOM05D000411 ORTHO05D000310 2.8e-06 55.5 98 46.9
Hund03050 Selenicereus undatus HOM05D000411 ORTHO05D000310 2.8e-06 55.5 97 53.6
SalBow3G3390 Salvia bowleyana HOM05D000411 ORTHO05D000310 3.7e-06 55.1 95 53.7
Hund11898 Selenicereus undatus HOM05D000411 ORTHO05D000310 3.7e-06 55.1 95 51.6
EL10Ac3g04992 Beta vulgaris HOM05D000411 ORTHO05D000310 4.8e-06 54.7 94 54.3
Eucgr.H03031 Eucalyptus grandis HOM05D000411 ORTHO05D000310 4.8e-06 54.7 95 51.6
Hma1.2p1_0112F.1_g054150 Hydrangea macrophylla HOM05D000411 ORTHO05D000310 4.8e-06 54.7 95 50.5
Psat3g056280 Pisum sativum HOM05D000411 ORTHO05D000310 4.8e-06 54.7 98 50.0
PGR004G2746 Punica granatum HOM05D000411 ORTHO05D000310 4.8e-06 54.7 96 49.0
Rhsim02G0040400 Rhododendron simsii HOM05D000411 ORTHO05D000310 4.8e-06 54.7 95 52.6
Sopen09g033150 Solanum pennellii HOM05D000411 ORTHO05D000310 4.8e-06 54.7 95 51.6
TWI12G1199 Tripterygium wilfordii HOM05D000411 ORTHO05D000310 4.8e-06 54.7 98 49.0
arahy.Tifrunner.gnm1.ann1.TB2RSK Arachis hypogaea HOM05D000411 ORTHO05D000310 6.2e-06 54.3 95 50.5
Glyma.19G166100 Glycine max HOM05D000411 ORTHO05D000310 6.2e-06 54.3 98 51.0
Gorai.001G179300 Gossypium raimondii HOM05D000411 ORTHO05D000310 6.2e-06 54.3 99 53.5
CAN.G1070.7 Capsicum annuum HOM05D000411 ORTHO05D000310 8.2e-06 53.9 98 54.1
Cpa.g.sc44.44 Carica papaya HOM05D000411 ORTHO05D000310 8.2e-06 53.9 95 49.5
HanXRQChr03g0091531 Helianthus annuus HOM05D000411 ORTHO05D000310 8.2e-06 53.9 97 53.6
Solyc09g090250.4 Solanum lycopersicum HOM05D000411 ORTHO05D000310 8.2e-06 53.9 95 51.6


User provided reference genes

Program Settings