Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung04260 Brassica carinata HOM05D004868 ORTHO05D006030 5.1e-190 667.5 330 100.0
C07p40470 Brassica napus HOM05D004868 ORTHO05D006030 3.3e-189 664.8 330 99.7
BolC7t44582H Brassica oleracea HOM05D004868 ORTHO05D006030 3.3e-189 664.8 330 99.7
BraA06t26695Z Brassica rapa HOM05D004868 ORTHO05D006030 1.1e-184 649.8 330 97.9
BcaNung04261 Brassica carinata HOM05D004868 ORTHO05D006030 5.0e-177 624.4 330 93.9
CARHR185710 Cardamine hirsuta HOM05D004868 ORTHO05D006030 4.8e-164 581.3 339 85.5
Thhalv10004543m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 1.8e-163 579.3 338 85.5
Aa31LG11G8840 Aethionema arabicum HOM05D004868 ORTHO05D006030 2.7e-162 575.5 321 87.5
Sp2g20350 Schrenkiella parvula HOM05D004868 ORTHO05D006030 5.9e-162 574.3 307 91.2
Carub.0006s2543 Capsella rubella HOM05D004868 ORTHO05D006030 1.5e-157 559.7 326 85.0
A03p33990 Brassica napus HOM05D004868 ORTHO05D006030 4.4e-157 558.1 324 83.0
BraA03t12574Z Brassica rapa HOM05D004868 ORTHO05D006030 5.7e-157 557.8 324 83.0
C03p41370 Brassica napus HOM05D004868 ORTHO05D006030 2.4e-155 552.4 324 82.1
BcaC01g04334 Brassica carinata HOM05D004868 ORTHO05D006030 1.2e-154 550.1 324 82.1
Thhalv10021106m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 1.2e-154 550.1 332 80.7
BolC3t16420H Brassica oleracea HOM05D004868 ORTHO05D006030 1.6e-154 549.7 324 81.5
Sp3g03920 Schrenkiella parvula HOM05D004868 ORTHO05D006030 4.5e-154 548.1 334 79.3
AT3G05100 Arabidopsis thaliana HOM05D004868 ORTHO05D006030 2.3e-153 545.8 332 80.1
Aa31LG5G15350 Aethionema arabicum HOM05D004868 ORTHO05D006030 3.9e-153 545.0 340 79.1
A05p42480 Brassica napus HOM05D004868 ORTHO05D006030 6.6e-153 544.3 324 80.6
BraA05t23004Z Brassica rapa HOM05D004868 ORTHO05D006030 6.6e-153 544.3 324 80.6
AL3G15480 Arabidopsis lyrata HOM05D004868 ORTHO05D006030 4.3e-152 541.6 325 80.0
Carub.0003s0434 Capsella rubella HOM05D004868 ORTHO05D006030 2.9e-148 528.9 321 80.1
BolC5t34872H Brassica oleracea HOM05D004868 ORTHO05D006030 6.4e-148 527.7 319 80.3
BcaB04g21374 Brassica carinata HOM05D004868 ORTHO05D006030 1.0e-145 520.4 330 76.7
AUR62005015 Chenopodium quinoa HOM05D004868 ORTHO05D006030 1.1e-144 516.9 331 75.2
Potri.005G046300 Populus trichocarpa HOM05D004868 ORTHO05D006030 2.8e-143 512.3 330 75.2
Manes.09G157900 Manihot esculenta HOM05D004868 ORTHO05D006030 1.4e-142 510.0 331 74.6
Potri.013G034000 Populus trichocarpa HOM05D004868 ORTHO05D006030 5.8e-141 504.6 330 74.5
C05p62140 Brassica napus HOM05D004868 ORTHO05D006030 3.7e-140 501.9 325 76.3
Lalb_Chr13g0291821 Lupinus albus HOM05D004868 ORTHO05D006030 1.1e-139 500.4 332 71.7
Ciclev10001724m.g Citrus clementina HOM05D004868 ORTHO05D006030 1.4e-139 500.0 337 71.8
Sabra05G0042300 Salix brachista HOM05D004868 ORTHO05D006030 2.4e-139 499.2 330 73.3
FAN09G4706 Fragaria x ananassa HOM05D004868 ORTHO05D006030 4.1e-139 498.4 326 73.6
Sed0014615 Sechium edule HOM05D004868 ORTHO05D006030 4.1e-139 498.4 326 74.8
Atru.chr2.656 Acer truncatum HOM05D004868 ORTHO05D006030 5.4e-139 498.0 325 74.8
FAN02G0279 Fragaria x ananassa HOM05D004868 ORTHO05D006030 7.0e-139 497.7 333 72.7
Gorai.007G286600 Gossypium raimondii HOM05D004868 ORTHO05D006030 1.2e-138 496.9 332 72.6
SalBow2G0736 Salvia bowleyana HOM05D004868 ORTHO05D006030 1.2e-138 496.9 320 73.1
FAN05G2179 Fragaria x ananassa HOM05D004868 ORTHO05D006030 2.1e-138 496.1 326 73.3
FAN05G5662 Fragaria x ananassa HOM05D004868 ORTHO05D006030 2.1e-138 496.1 326 73.3
QL03p000170 Quercus lobata HOM05D004868 ORTHO05D006030 2.7e-138 495.7 337 71.5
arahy.Tifrunner.gnm1.ann1.WET4Y7 Arachis hypogaea HOM05D004868 ORTHO05D006030 3.5e-138 495.4 334 71.3
Lalb_Chr12g0208121 Lupinus albus HOM05D004868 ORTHO05D006030 3.5e-138 495.4 329 71.1
QL03p000506 Quercus lobata HOM05D004868 ORTHO05D006030 3.5e-138 495.4 337 71.5
arahy.Tifrunner.gnm1.ann1.VSGL27 Arachis hypogaea HOM05D004868 ORTHO05D006030 1.7e-137 493.0 341 70.1
Gohir.D11G266800 Gossypium hirsutum HOM05D004868 ORTHO05D006030 1.7e-137 493.0 332 72.9
MD04G1217100 Malus domestica HOM05D004868 ORTHO05D006030 2.3e-137 492.7 335 70.4
MD12G1234100 Malus domestica HOM05D004868 ORTHO05D006030 3.0e-137 492.3 347 70.0
PGR004G1913 Punica granatum HOM05D004868 ORTHO05D006030 3.0e-137 492.3 330 73.6
Phvul.010G080900 Phaseolus vulgaris HOM05D004868 ORTHO05D006030 6.6e-137 491.1 343 70.0
CAN.G134.187 Capsicum annuum HOM05D004868 ORTHO05D006030 2.5e-136 489.2 355 68.5
COL.COLO4_13636 Corchorus olitorius HOM05D004868 ORTHO05D006030 5.6e-136 488.0 335 72.8
FAN14G3773 Fragaria x ananassa HOM05D004868 ORTHO05D006030 5.6e-136 488.0 333 71.8
TWI12G1223 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 5.6e-136 488.0 329 71.1
Ah.06g192760 Amaranthus hybridus HOM05D004868 ORTHO05D006030 2.8e-135 485.7 292 76.7
TWI36G0026 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 2.8e-135 485.7 335 70.7
Sed0017257 Sechium edule HOM05D004868 ORTHO05D006030 3.1e-134 482.3 326 72.4
FvH4_6g03940 Fragaria vesca HOM05D004868 ORTHO05D006030 5.2e-134 481.5 333 70.9
Gohir.A11G257000 Gossypium hirsutum HOM05D004868 ORTHO05D006030 5.2e-134 481.5 333 71.5
Lj3g0018370 Lotus japonicus HOM05D004868 ORTHO05D006030 6.8e-134 481.1 328 70.4
ClCG03G010920 Citrullus lanatus HOM05D004868 ORTHO05D006030 8.9e-134 480.7 330 70.9
Cc02_g31280 Coffea canephora HOM05D004868 ORTHO05D006030 1.2e-133 480.3 326 71.5
TPR.G7590 Trifolium pratense HOM05D004868 ORTHO05D006030 1.5e-133 479.9 330 70.3
TAR636G1948 Trochodendron aralioides HOM05D004868 ORTHO05D006030 3.4e-133 478.8 316 72.5
CANSAT54G1013 Cannabis sativa HOM05D004868 ORTHO05D006030 4.4e-133 478.4 329 71.4
EL10Ac4g09208 Beta vulgaris HOM05D004868 ORTHO05D006030 5.8e-133 478.0 268 81.0
CsaV3_1G044760 Cucumis sativus L. HOM05D004868 ORTHO05D006030 5.8e-133 478.0 327 70.6
Ah.04g160130 Amaranthus hybridus HOM05D004868 ORTHO05D006030 7.5e-133 477.6 268 80.2
CiPaw.07G009000 Carya illinoinensis HOM05D004868 ORTHO05D006030 9.9e-133 477.2 328 70.1
Duzib177G0825 Durio zibethinus HOM05D004868 ORTHO05D006030 9.9e-133 477.2 332 71.4
MELO3C010076.2 Cucumis melo HOM05D004868 ORTHO05D006030 2.2e-132 476.1 330 71.2
Medtr4g025410 Medicago truncatula HOM05D004868 ORTHO05D006030 2.2e-132 476.1 325 69.5
SGA_v2.0_scaffold146G36132 Striga asiatica HOM05D004868 ORTHO05D006030 2.9e-132 475.7 321 71.0
CSS0010529 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 3.7e-132 475.3 291 76.6
CSS0039857 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 3.7e-132 475.3 285 78.9
ECA246G2619 Erigeron canadensis HOM05D004868 ORTHO05D006030 3.7e-132 475.3 319 71.5
Hma1.2p1_0332F.1_g127880 Hydrangea macrophylla HOM05D004868 ORTHO05D006030 4.9e-132 474.9 334 69.8
Nitab4.5_0002361g0200 Nicotiana tabacum HOM05D004868 ORTHO05D006030 8.3e-132 474.2 336 70.5
Ca_13816_v3 Cicer arietinum L. HOM05D004868 ORTHO05D006030 1.1e-131 473.8 329 69.6
Peaxi162Scf00225g00143 Petunia axillaris HOM05D004868 ORTHO05D006030 1.1e-131 473.8 328 71.6
CSS0028974 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 1.4e-131 473.4 285 78.9
Nitab4.5_0002840g0160 Nicotiana tabacum HOM05D004868 ORTHO05D006030 1.9e-131 473.0 336 70.5
MSTRG.13789 Avicennia marina HOM05D004868 ORTHO05D006030 4.1e-131 471.9 333 67.9
Glyma.01G139000 Glycine max HOM05D004868 ORTHO05D006030 4.1e-131 471.9 345 67.2
Actinidia33836 Actinidia chinensis HOM05D004868 ORTHO05D006030 9.2e-131 470.7 321 71.7
MSTRG.12666 Avicennia marina HOM05D004868 ORTHO05D006030 9.2e-131 470.7 318 72.0
Thecc.05G291500 Theobroma cacao HOM05D004868 ORTHO05D006030 1.6e-130 469.9 336 69.9
Haze_04309 Corylus avellana HOM05D004868 ORTHO05D006030 2.1e-130 469.5 263 80.6
Rhsim05G0148800 Rhododendron simsii HOM05D004868 ORTHO05D006030 4.6e-130 468.4 268 81.3
Migut.B00327 Erythranthe guttata HOM05D004868 ORTHO05D006030 6.0e-130 468.0 320 71.2
RcHm_v2.0_Chr3g0452511 Rosa chinensis HOM05D004868 ORTHO05D006030 1.3e-129 466.8 274 77.4
VMungo0331G1201 Vigna mungo HOM05D004868 ORTHO05D006030 1.3e-129 466.8 332 68.7
Solyc01g098040.3 Solanum lycopersicum HOM05D004868 ORTHO05D006030 1.7e-129 466.5 332 69.9
Hund07000 Selenicereus undatus HOM05D004868 ORTHO05D006030 3.0e-129 465.7 288 75.7
Sopen01g041620 Solanum pennellii HOM05D004868 ORTHO05D006030 3.0e-129 465.7 332 69.9
PGSC0003DMG400022466 Solanum tuberosum HOM05D004868 ORTHO05D006030 3.9e-129 465.3 332 69.6
Prupe.6G337200 Prunus persica HOM05D004868 ORTHO05D006030 5.1e-129 464.9 265 79.6
Glyma.03G028300 Glycine max HOM05D004868 ORTHO05D006030 6.6e-129 464.5 344 66.0
Oeu012475.1 Olea europaea HOM05D004868 ORTHO05D006030 6.6e-129 464.5 270 79.3
DCAR_022833 Daucus carota HOM05D004868 ORTHO05D006030 1.1e-128 463.8 267 79.8
TPR.G39359 Trifolium pratense HOM05D004868 ORTHO05D006030 1.1e-128 463.8 300 73.7
Cfa006482 Carpinus fangiana HOM05D004868 ORTHO05D006030 1.9e-128 463.0 263 79.5
CSS0000773 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 2.5e-128 462.6 271 78.6
HanXRQChr05g0161431 Helianthus annuus HOM05D004868 ORTHO05D006030 2.5e-128 462.6 322 69.6
Lsat_1_v5_gn_9_40320 Lactuca sativa HOM05D004868 ORTHO05D006030 1.5e-125 453.4 263 79.1
Eucgr.H04401 Eucalyptus grandis HOM05D004868 ORTHO05D006030 3.4e-125 452.2 323 68.7
PSO170G6220 Papaver somniferum HOM05D004868 ORTHO05D006030 2.9e-124 449.1 329 67.2
PSO210G5882 Papaver somniferum HOM05D004868 ORTHO05D006030 6.4e-124 448.0 329 66.9
Aqoxy5G00612 Aquilegia oxysepala HOM05D004868 ORTHO05D006030 1.1e-123 447.2 271 76.8
HanXRQChr14g0447091 Helianthus annuus HOM05D004868 ORTHO05D006030 9.2e-123 444.1 286 72.7
CiPaw.08G177900 Carya illinoinensis HOM05D004868 ORTHO05D006030 1.2e-122 443.7 263 76.8
MBI18_g14729_MAGBIO Magnolia biondii HOM05D004868 ORTHO05D006030 6.0e-122 441.4 324 67.0
Lj9A672G84 Lonicera japonica HOM05D004868 ORTHO05D006030 6.6e-121 438.0 242 82.6
GSVIVG01021894001 Vitis vinifera HOM05D004868 ORTHO05D006030 4.8e-119 431.8 242 81.4
unitig_8.g3689 Utricularia gibba HOM05D004868 ORTHO05D006030 8.1e-119 431.0 320 65.3
AUR62000953 Chenopodium quinoa HOM05D004868 ORTHO05D006030 3.8e-116 422.2 233 82.8
Zm00001eb110980 Zea mays HOM05D004868 ORTHO05D006030 1.1e-115 420.6 268 73.5
ATR0618G246 Amborella trichopoda HOM05D004868 ORTHO05D006030 1.9e-112 409.8 344 59.6
Os07g0667400 Oryza sativa ssp. japonica HOM05D004868 ORTHO05D006030 2.5e-112 409.5 347 60.8
Lj7C479T1 Lonicera japonica HOM05D004868 ORTHO05D006030 7.3e-112 407.9 217 84.3
Sabra13G0033200 Salix brachista HOM05D004868 ORTHO05D006030 1.4e-110 403.7 240 80.0
Cpa.g.sc117.39 Carica papaya HOM05D004868 ORTHO05D006030 1.2e-109 400.6 214 84.1
Nn4g26018 Nelumbo nucifera HOM05D004868 ORTHO05D006030 2.6e-109 399.4 221 81.0
vmacro05392 Vaccinium macrocarpon HOM05D004868 ORTHO05D006030 9.9e-109 397.5 220 81.8
Dinv02605 Davidia involucrata HOM05D004868 ORTHO05D006030 1.3e-108 397.1 221 81.9
A06p37760 Brassica napus HOM05D004868 ORTHO05D006030 2.2e-108 396.4 207 97.1
HPP92_011336 Vanilla planifolia HOM05D004868 ORTHO05D006030 4.9e-108 395.2 322 63.4
HPP92_016882 Vanilla planifolia HOM05D004868 ORTHO05D006030 6.4e-108 394.8 329 60.8
Psat7g231080 Pisum sativum HOM05D004868 ORTHO05D006030 1.9e-107 393.3 217 80.2
SEGI_16580 Sequoiadendron giganteum HOM05D004868 ORTHO05D006030 6.7e-105 384.8 285 66.3
SMO203G0024 Selaginella moellendorffii HOM05D004868 ORTHO05D006030 1.4e-102 377.1 305 60.0
Dinv02602 Davidia involucrata HOM05D004868 ORTHO05D006030 1.2e-101 374.0 208 82.2
Oeu027042.1 Olea europaea HOM05D004868 ORTHO05D006030 6.7e-97 358.2 290 62.4
SHI18309 Sapria himalayana HOM05D004868 ORTHO05D006030 1.5e-96 357.1 218 72.5
AagrBONN_evm.TU.Sc2ySwM_344.3690 Anthoceros agrestis HOM05D004868 ORTHO05D006030 7.6e-93 344.7 331 55.9
CARHR079420 Cardamine hirsuta HOM05D004868 ORTHO05D006030 5.7e-88 328.6 216 77.3
TAR365G1069 Trochodendron aralioides HOM05D004868 ORTHO05D006030 4.5e-85 318.9 234 69.2
Pp3c9_1110 Physcomitrium patens HOM05D004868 ORTHO05D006030 3.9e-81 305.8 296 53.0
BcaC05g29994 Brassica carinata HOM05D004868 ORTHO05D006030 6.9e-78 295.0 218 68.3
Cpa.g.c47757 Carica papaya HOM05D004868 ORTHO05D006030 5.9e-77 292.0 152 86.2
Dinv17742 Davidia involucrata HOM05D004868 ORTHO05D006030 7.7e-77 291.6 162 81.5
CDE08G0242 Ceratophyllum demersum HOM05D004868 ORTHO05D006030 1.0e-73 281.2 240 60.8
Nn3g21303 Nelumbo nucifera HOM05D004868 ORTHO05D006030 2.2e-68 263.5 218 62.8
Sc09g0003690 Simmondsia chinensis HOM05D004868 ORTHO05D006030 1.9e-67 260.4 217 62.7
CDE02G4194 Ceratophyllum demersum HOM05D001090 ORTHO05D002687 8.0e-58 228.4 126 82.5
HPP92_028573 Vanilla planifolia HOM05D004868 ORTHO05D006030 7.0e-54 215.3 147 68.7
BcaB04g19280 Brassica carinata HOM05D004868 ORTHO05D006030 3.6e-50 203.0 166 66.3
BcaNung04262 Brassica carinata HOM05D004868 ORTHO05D027635 1.5e-43 181.0 112 90.2
Lsat_1_v5_gn_5_121600 Lactuca sativa HOM05D004868 ORTHO05D027635 2.3e-20 104.0 106 53.8
Lj7C479T9 Lonicera japonica HOM05D004868 ORTHO05D027635 3.3e-19 100.1 107 57.9
SHI18307 Sapria himalayana HOM05D004868 ORTHO05D027635 5.8e-16 89.4 113 46.9
BolC1t05715H Brassica oleracea HOM05D004868 ORTHO05D006030 2.3e-12 77.4 49 61.2


User provided reference genes

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