Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung04233 Brassica carinata HOM05D001235 ORTHO05D005684 5.9e-42 173.7 83 100.0
BcaB04g19735 Brassica carinata HOM05D001235 ORTHO05D005684 2.8e-20 101.7 82 64.6
BcaC04g23619 Brassica carinata HOM05D001235 ORTHO05D005684 2.8e-20 101.7 82 64.6
A02p39300 Brassica napus HOM05D001235 ORTHO05D005684 2.8e-20 101.7 82 64.6
A09p05840 Brassica napus HOM05D001235 ORTHO05D005684 2.8e-20 101.7 82 64.6
C09p06430 Brassica napus HOM05D001235 ORTHO05D005684 2.8e-20 101.7 82 64.6
BolC9t53563H Brassica oleracea HOM05D001235 ORTHO05D005684 2.8e-20 101.7 82 64.6
BraA02t08895Z Brassica rapa HOM05D001235 ORTHO05D005684 2.8e-20 101.7 82 64.6
BraA09t36226Z Brassica rapa HOM05D001235 ORTHO05D005684 2.8e-20 101.7 82 64.6
BcaB07g29956 Brassica carinata HOM05D001235 ORTHO05D005684 6.3e-20 100.5 82 63.4
AL6G38320 Arabidopsis lyrata HOM05D001235 ORTHO05D005684 1.4e-19 99.4 82 63.4
AT5G26570 Arabidopsis thaliana HOM05D001235 ORTHO05D005684 1.4e-19 99.4 82 63.4
BcaC03g17860 Brassica carinata HOM05D001235 ORTHO05D005684 2.4e-19 98.6 82 63.4
BolC2t11957H Brassica oleracea HOM05D001235 ORTHO05D005684 2.4e-19 98.6 82 63.4
C02p59020 Brassica napus HOM05D001235 ORTHO05D005684 3.1e-19 98.2 82 63.4
Carub.0006s2413 Capsella rubella HOM05D001235 ORTHO05D005684 4.1e-19 97.8 82 62.2
CARHR187040 Cardamine hirsuta HOM05D001235 ORTHO05D005684 5.3e-19 97.4 82 61.0
Sp2g21450 Schrenkiella parvula HOM05D001235 ORTHO05D005684 3.5e-18 94.7 82 61.0
Aa31LG11G10130 Aethionema arabicum HOM05D001235 ORTHO05D005684 5.9e-18 94.0 82 58.5
THA.LOC104818773 Tarenaya hassleriana HOM05D001235 ORTHO05D005684 3.8e-17 91.3 82 57.3
Actinidia35919 Actinidia chinensis HOM05D001235 ORTHO05D005684 1.6e-15 85.9 81 54.3
Glyma.10G298000 Glycine max HOM05D001235 ORTHO05D005684 2.7e-15 85.1 82 52.4
Hund19034 Selenicereus undatus HOM05D001235 ORTHO05D005684 2.7e-15 85.1 81 54.3
AUR62020915 Chenopodium quinoa HOM05D001235 ORTHO05D005684 4.7e-15 84.3 82 52.4
Glyma.20G249000 Glycine max HOM05D001235 ORTHO05D005684 4.7e-15 84.3 81 51.9
AUR62018504 Chenopodium quinoa HOM05D001235 ORTHO05D005684 6.1e-15 84.0 82 51.2
Manes.05G194300 Manihot esculenta HOM05D001235 ORTHO05D005684 6.1e-15 84.0 81 50.6
arahy.Tifrunner.gnm1.ann1.I3JYC0 Arachis hypogaea HOM05D001235 ORTHO05D005684 8.0e-15 83.6 81 51.9
arahy.Tifrunner.gnm1.ann1.MZNG30 Arachis hypogaea HOM05D001235 ORTHO05D005684 8.0e-15 83.6 81 51.9
TWI73G0237 Tripterygium wilfordii HOM05D001235 ORTHO05D005684 8.0e-15 83.6 81 50.6
Ciclev10006658m.g Citrus clementina HOM05D001235 ORTHO05D005684 1.0e-14 83.2 81 51.9
Medtr6g093240 Medicago truncatula HOM05D001235 ORTHO05D005684 1.0e-14 83.2 81 51.9
Ca_11427_v3 Cicer arietinum L. HOM05D001235 ORTHO05D005684 1.4e-14 82.8 81 51.9
Ca_29863_v3 Cicer arietinum L. HOM05D001235 ORTHO05D005684 1.4e-14 82.8 81 51.9
Sabra02G0178900 Salix brachista HOM05D001235 ORTHO05D005684 1.4e-14 82.8 81 49.4
THA.LOC104822294 Tarenaya hassleriana HOM05D001235 ORTHO05D005684 1.4e-14 82.8 82 53.7
EL10Ac3g07409 Beta vulgaris HOM05D001235 ORTHO05D005684 1.8e-14 82.4 82 51.2
Migut.N03329 Erythranthe guttata HOM05D001235 ORTHO05D005684 1.8e-14 82.4 81 51.9
Thecc.04G188100 Theobroma cacao HOM05D001235 ORTHO05D005684 1.8e-14 82.4 81 48.1
Oeu001997.1 Olea europaea HOM05D001235 ORTHO05D005684 2.3e-14 82.0 82 48.8
GSVIVG01031639001 Vitis vinifera HOM05D001235 ORTHO05D005684 2.3e-14 82.0 81 50.6
CiPaw.01G110000 Carya illinoinensis HOM05D001235 ORTHO05D005684 3.0e-14 81.6 81 50.6
Gohir.D10G133800 Gossypium hirsutum HOM05D001235 ORTHO05D005684 3.0e-14 81.6 82 47.6
Gorai.011G147600 Gossypium raimondii HOM05D001235 ORTHO05D005684 3.0e-14 81.6 82 47.6
Medtr1g117000 Medicago truncatula HOM05D001235 ORTHO05D005684 3.0e-14 81.6 81 50.6
Atru.chr3.1828 Acer truncatum HOM05D001235 ORTHO05D005684 4.0e-14 81.3 82 50.0
Aqoxy5G00036 Aquilegia oxysepala HOM05D001235 ORTHO05D005684 4.0e-14 81.3 81 51.9
CDE04G0849 Ceratophyllum demersum HOM05D001235 ORTHO05D005684 4.0e-14 81.3 82 50.0
Nn1g08260 Nelumbo nucifera HOM05D001235 ORTHO05D005684 4.0e-14 81.3 82 50.0
CSS0015752 Camellia sinensis var. sinensis HOM05D001235 ORTHO05D005684 6.8e-14 80.5 81 49.4
CSS0039330 Camellia sinensis var. sinensis HOM05D001235 ORTHO05D005684 6.8e-14 80.5 81 49.4
Cfa008685 Carpinus fangiana HOM05D001235 ORTHO05D005684 6.8e-14 80.5 81 49.4
Haze_11704 Corylus avellana HOM05D001235 ORTHO05D005684 6.8e-14 80.5 81 49.4
Duzib151G0601 Durio zibethinus HOM05D001235 ORTHO05D005684 6.8e-14 80.5 81 46.9
Duzib212G0549 Durio zibethinus HOM05D001235 ORTHO05D005684 6.8e-14 80.5 81 46.9
Phvul.007G001400 Phaseolus vulgaris HOM05D001235 ORTHO05D005684 6.8e-14 80.5 82 50.0
Potri.002G234500 Populus trichocarpa HOM05D001235 ORTHO05D005684 8.8e-14 80.1 81 49.4
COL.COLO4_08688 Corchorus olitorius HOM05D001235 ORTHO05D005684 1.2e-13 79.7 81 46.9
Os12g0297500 Oryza sativa ssp. japonica HOM05D001235 ORTHO05D005684 1.2e-13 79.7 81 49.4
PSO170G5672 Papaver somniferum HOM05D001235 ORTHO05D005684 1.2e-13 79.7 82 47.6
TPR.G40801 Trifolium pratense HOM05D001235 ORTHO05D005684 1.5e-13 79.3 81 50.6
Lj5g0010068 Lotus japonicus HOM05D001235 ORTHO05D005684 2.0e-13 79.0 81 50.6
Potri.014G147900 Populus trichocarpa HOM05D001235 ORTHO05D005684 2.0e-13 79.0 81 49.4
VMungo0720G0937 Vigna mungo HOM05D001235 ORTHO05D005684 2.0e-13 79.0 82 50.0
Ah.04g149690 Amaranthus hybridus HOM05D001235 ORTHO05D005684 3.4e-13 78.2 81 50.6
DCAR_027478 Daucus carota HOM05D001235 ORTHO05D005684 3.4e-13 78.2 81 50.6
Dinv27164 Davidia involucrata HOM05D001235 ORTHO05D005684 3.4e-13 78.2 81 48.1
TAR362G0786 Trochodendron aralioides HOM05D001235 ORTHO05D005684 3.4e-13 78.2 81 48.1
Cc03_g10000 Coffea canephora HOM05D001235 ORTHO05D005684 4.4e-13 77.8 81 48.1
Dinv13678 Davidia involucrata HOM05D001235 ORTHO05D005684 4.4e-13 77.8 82 46.3
QL06p027955 Quercus lobata HOM05D001235 ORTHO05D005684 4.4e-13 77.8 81 48.1
Rhsim01G0114000 Rhododendron simsii HOM05D001235 ORTHO05D005684 4.4e-13 77.8 81 48.1
vmacro20797 Vaccinium macrocarpon HOM05D001235 ORTHO05D005684 5.7e-13 77.4 81 48.1
SEGI_29879 Sequoiadendron giganteum HOM05D001235 ORTHO05D005684 7.5e-13 77.0 81 48.1
Cpa.g.sc502.2 Carica papaya HOM05D001235 ORTHO05D005684 9.8e-13 76.6 82 48.8
PGR142G1880 Punica granatum HOM05D001235 ORTHO05D005684 9.8e-13 76.6 81 48.1
CANSAT78G1591 Cannabis sativa HOM05D001235 ORTHO05D005684 1.3e-12 76.3 82 46.3
Sc19g0007540 Simmondsia chinensis HOM05D001235 ORTHO05D005684 1.3e-12 76.3 81 49.4
CDE07G1609 Ceratophyllum demersum HOM05D001235 ORTHO05D005684 1.7e-12 75.9 82 46.3
ClCG07G015490 Citrullus lanatus HOM05D001235 ORTHO05D005684 1.7e-12 75.9 82 47.6
Sed0003584 Sechium edule HOM05D001235 ORTHO05D005684 1.7e-12 75.9 82 47.6
MSTRG.22434 Avicennia marina HOM05D001235 ORTHO05D005684 2.2e-12 75.5 81 46.9
Eucgr.H00494 Eucalyptus grandis HOM05D001235 ORTHO05D005684 2.2e-12 75.5 81 45.7
Lalb_Chr02g0144531 Lupinus albus HOM05D001235 ORTHO05D005684 2.2e-12 75.5 82 47.6
Prupe.1G175200 Prunus persica HOM05D001235 ORTHO05D005684 2.2e-12 75.5 82 47.6
MELO3C017735.2 Cucumis melo HOM05D001235 ORTHO05D005684 3.7e-12 74.7 82 47.6
CsaV3_4G003110 Cucumis sativus L. HOM05D001235 ORTHO05D005684 3.7e-12 74.7 82 47.6
Lsat_1_v5_gn_1_69940 Lactuca sativa HOM05D001235 ORTHO05D005684 3.7e-12 74.7 82 50.0
Nitab4.5_0012294g0010 Nicotiana tabacum HOM05D001235 ORTHO05D005684 3.7e-12 74.7 81 45.7
Peaxi162Scf00286g00547 Petunia axillaris HOM05D001235 ORTHO05D005684 3.7e-12 74.7 81 45.7
Psat6g244000 Pisum sativum HOM05D001235 ORTHO05D005684 3.7e-12 74.7 81 46.9
Solyc09g098040.3 Solanum lycopersicum HOM05D001235 ORTHO05D005684 3.7e-12 74.7 81 45.7
CAN.G681.26 Capsicum annuum HOM05D001235 ORTHO05D005684 4.8e-12 74.3 81 45.7
FvH4_4g12510 Fragaria vesca HOM05D001235 ORTHO05D005684 4.8e-12 74.3 82 47.6
FAN07G2568 Fragaria x ananassa HOM05D001235 ORTHO05D005684 4.8e-12 74.3 82 47.6
FAN12G0235 Fragaria x ananassa HOM05D001235 ORTHO05D005684 4.8e-12 74.3 82 47.6
FAN17G0427 Fragaria x ananassa HOM05D001235 ORTHO05D005684 4.8e-12 74.3 82 47.6
Gohir.A09G209000 Gossypium hirsutum HOM05D001235 ORTHO05D005684 4.8e-12 74.3 81 45.7
Gohir.D09G202400 Gossypium hirsutum HOM05D001235 ORTHO05D005684 4.8e-12 74.3 81 45.7
Gorai.006G226300 Gossypium raimondii HOM05D001235 ORTHO05D005684 4.8e-12 74.3 81 45.7
Hma1.2p1_0349F.1_g132360 Hydrangea macrophylla HOM05D001235 ORTHO05D005684 6.3e-12 73.9 81 46.9
RcHm_v2.0_Chr4g0411331 Rosa chinensis HOM05D001235 ORTHO05D005684 6.3e-12 73.9 82 47.6
PGSC0003DMG400016613 Solanum tuberosum HOM05D001235 ORTHO05D005684 6.3e-12 73.9 81 45.7
Sopen09g035960 Solanum pennellii HOM05D001235 ORTHO05D005684 8.3e-12 73.6 81 45.7
PSO357G0146 Papaver somniferum HOM05D001235 ORTHO05D005684 1.1e-11 73.2 82 46.3
Nitab4.5_0001693g0060 Nicotiana tabacum HOM05D001235 ORTHO05D005684 1.8e-11 72.4 81 44.4
HanXRQChr01g0021711 Helianthus annuus HOM05D001235 ORTHO05D005684 3.1e-11 71.6 82 47.6
Sabra14G0111700 Salix brachista HOM05D001235 ORTHO05D005684 3.1e-11 71.6 81 44.4
HPP92_009959 Vanilla planifolia HOM05D001235 ORTHO05D005684 3.1e-11 71.6 81 46.9
FAN22G1075 Fragaria x ananassa HOM05D001235 ORTHO05D005684 5.4e-11 70.9 82 46.3
SalBow6G1240 Salvia bowleyana HOM05D001235 ORTHO05D005684 1.2e-10 69.7 82 42.7
ECA248G1402 Erigeron canadensis HOM05D001235 ORTHO05D005684 1.6e-10 69.3 82 45.1
ATR0686G153 Amborella trichopoda HOM05D001235 ORTHO05D005684 1.0e-09 66.6 82 43.9
MD04G1025900 Malus domestica HOM05D001235 ORTHO05D005684 1.3e-09 66.2 82 46.3
SMO146G0043 Selaginella moellendorffii HOM05D001235 ORTHO05D005684 2.5e-08 62.0 81 38.3
Mapoly0096s0069 Marchantia polymorpha HOM05D001235 ORTHO05D005684 1.2e-07 59.7 82 41.5
Pp3c18_14870 Physcomitrium patens HOM05D001235 ORTHO05D005684 1.6e-07 59.3 82 39.0


User provided reference genes

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