Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung04166 Brassica carinata HOM05D005382 ORTHO05D006795 1.0e-114 416.8 218 100.0
C06p29630 Brassica napus HOM05D005382 ORTHO05D006795 2.4e-111 405.6 220 98.6
A07p26960 Brassica napus HOM05D005382 ORTHO05D006795 6.6e-109 397.5 220 95.9
BraA07t30340Z Brassica rapa HOM05D005382 ORTHO05D006795 6.6e-109 397.5 220 95.9
BolC6t38128H Brassica oleracea HOM05D005382 ORTHO05D006795 4.7e-107 391.3 220 96.4
BcaB02g07237 Brassica carinata HOM05D005382 ORTHO05D006795 2.7e-102 375.6 222 93.2
Thhalv10019121m.g Eutrema salsugineum HOM05D005382 ORTHO05D006795 1.8e-98 362.8 220 90.0
A07p44750 Brassica napus HOM05D005382 ORTHO05D006795 8.9e-98 360.5 225 90.7
BraA07t31983Z Brassica rapa HOM05D005382 ORTHO05D006795 4.4e-97 358.2 225 90.2
BcaC08g47533 Brassica carinata HOM05D005382 ORTHO05D006795 2.2e-96 355.9 227 89.0
BolC6t40373H Brassica oleracea HOM05D005382 ORTHO05D006795 2.2e-96 355.9 227 89.0
C06p53570 Brassica napus HOM05D005382 ORTHO05D006795 8.3e-96 354.0 221 89.6
AL2G40440 Arabidopsis lyrata HOM05D005382 ORTHO05D006795 2.0e-94 349.4 220 86.8
BcaB02g08711 Brassica carinata HOM05D005382 ORTHO05D006795 2.7e-94 349.0 226 88.5
Carub.0002s2660 Capsella rubella HOM05D005382 ORTHO05D006795 3.5e-94 348.6 220 87.7
AT1G80940 Arabidopsis thaliana HOM05D005382 ORTHO05D006795 7.8e-94 347.4 220 86.4
Sp5g34800 Schrenkiella parvula HOM05D005382 ORTHO05D006795 5.6e-92 341.3 220 86.8
Aa31LG4G1250 Aethionema arabicum HOM05D005382 ORTHO05D006795 6.4e-88 327.8 223 80.3
THA.LOC104808172 Tarenaya hassleriana HOM05D005382 ORTHO05D006795 5.4e-79 298.1 205 77.6
CARHR073510 Cardamine hirsuta HOM05D005382 ORTHO05D006795 1.2e-75 287.0 178 86.5
Gorai.007G085500 Gossypium raimondii HOM05D005382 ORTHO05D006795 2.4e-63 246.1 209 67.0
Manes.11G069200 Manihot esculenta HOM05D005382 ORTHO05D006795 3.2e-63 245.7 229 62.0
Potri.003G184925 Populus trichocarpa HOM05D005382 ORTHO05D006795 5.4e-63 245.0 209 64.6
Manes.04G100900 Manihot esculenta HOM05D005382 ORTHO05D006795 7.1e-63 244.6 209 65.1
CiPaw.01G256500 Carya illinoinensis HOM05D005382 ORTHO05D006795 9.3e-63 244.2 216 64.8
Thecc.06G046600 Theobroma cacao HOM05D005382 ORTHO05D006795 1.2e-62 243.8 208 65.4
Actinidia08935 Actinidia chinensis HOM05D005382 ORTHO05D006795 2.1e-62 243.0 218 65.1
Gohir.A11G075200 Gossypium hirsutum HOM05D005382 ORTHO05D006795 2.1e-62 243.0 189 70.4
Potri.001G041900 Populus trichocarpa HOM05D005382 ORTHO05D006795 2.1e-62 243.0 223 62.3
FAN05G5289 Fragaria x ananassa HOM05D005382 ORTHO05D006795 6.0e-62 241.5 218 64.2
TWI12G1456 Tripterygium wilfordii HOM05D005382 ORTHO05D006795 6.0e-62 241.5 203 66.5
Glyma.08G220400 Glycine max HOM05D005382 ORTHO05D006795 7.9e-62 241.1 205 67.3
CiPaw.02G163400 Carya illinoinensis HOM05D005382 ORTHO05D006795 2.3e-61 239.6 216 63.9
FvH4_6g28270 Fragaria vesca HOM05D005382 ORTHO05D006795 3.0e-61 239.2 218 63.8
DCAR_021374 Daucus carota HOM05D005382 ORTHO05D006795 3.9e-61 238.8 206 64.6
Nn8g40079 Nelumbo nucifera HOM05D005382 ORTHO05D006795 5.1e-61 238.4 195 65.1
RcHm_v2.0_Chr2g0132311 Rosa chinensis HOM05D005382 ORTHO05D006795 5.1e-61 238.4 225 62.2
Cc04_g05300 Coffea canephora HOM05D005382 ORTHO05D006795 8.7e-61 237.7 216 63.4
COL.COLO4_26772 Corchorus olitorius HOM05D005382 ORTHO05D006795 1.5e-60 236.9 215 64.2
FAN09G0036 Fragaria x ananassa HOM05D005382 ORTHO05D006795 1.9e-60 236.5 217 63.6
MD17G1226400 Malus domestica HOM05D005382 ORTHO05D006795 1.9e-60 236.5 207 64.3
Hma1.2p1_0329F.1_g127290 Hydrangea macrophylla HOM05D005382 ORTHO05D006795 2.5e-60 236.1 205 64.9
Sabra03G0135500 Salix brachista HOM05D005382 ORTHO05D006795 4.3e-60 235.3 218 61.9
HanXRQChr04g0100021 Helianthus annuus HOM05D005382 ORTHO05D006795 5.6e-60 235.0 204 66.7
HanXRQChr09g0274181 Helianthus annuus HOM05D005382 ORTHO05D006795 1.3e-59 233.8 203 66.0
Lsat_1_v5_gn_1_30801 Lactuca sativa HOM05D005382 ORTHO05D006795 1.3e-59 233.8 217 62.2
PGR102G0492 Punica granatum HOM05D005382 ORTHO05D006795 1.6e-59 233.4 194 64.9
MD09G1227600 Malus domestica HOM05D005382 ORTHO05D006795 2.1e-59 233.0 229 60.3
TAR625G1145 Trochodendron aralioides HOM05D005382 ORTHO05D006795 2.1e-59 233.0 209 63.6
Medtr4g007700 Medicago truncatula HOM05D005382 ORTHO05D006795 2.8e-59 232.6 200 66.0
BcaB07g33703 Brassica carinata HOM05D005382 ORTHO05D006795 3.6e-59 232.3 154 81.8
Nn8g40087 Nelumbo nucifera HOM05D005382 ORTHO05D006795 4.8e-59 231.9 195 63.6
ECA232G4196 Erigeron canadensis HOM05D005382 ORTHO05D006795 6.2e-59 231.5 222 61.7
MSTRG.22842 Avicennia marina HOM05D005382 ORTHO05D006795 8.1e-59 231.1 221 57.9
Gohir.D11G079900 Gossypium hirsutum HOM05D005382 ORTHO05D006795 8.1e-59 231.1 196 67.3
Dinv21426 Davidia involucrata HOM05D005382 ORTHO05D006795 1.4e-58 230.3 204 64.2
Phvul.008G253200 Phaseolus vulgaris HOM05D005382 ORTHO05D006795 1.8e-58 229.9 203 64.5
CAN.G1008.7 Capsicum annuum HOM05D005382 ORTHO05D006795 2.4e-58 229.6 200 62.0
ECA247G2189 Erigeron canadensis HOM05D005382 ORTHO05D006795 2.4e-58 229.6 209 62.7
Lj3g0027435 Lotus japonicus HOM05D005382 ORTHO05D006795 2.4e-58 229.6 205 62.4
MBI15_g08404_MAGBIO Magnolia biondii HOM05D005382 ORTHO05D006795 2.4e-58 229.6 205 62.4
Glyma.07G021400 Glycine max HOM05D005382 ORTHO05D006795 3.1e-58 229.2 205 63.9
Nitab4.5_0004738g0090 Nicotiana tabacum HOM05D005382 ORTHO05D006795 4.0e-58 228.8 199 61.3
VMungo0647G2390 Vigna mungo HOM05D005382 ORTHO05D006795 4.0e-58 228.8 208 65.4
Nitab4.5_0002700g0060 Nicotiana tabacum HOM05D005382 ORTHO05D006795 6.9e-58 228.0 199 61.8
Sabra01G0028700 Salix brachista HOM05D005382 ORTHO05D006795 6.9e-58 228.0 222 59.0
Migut.I00626 Erythranthe guttata HOM05D005382 ORTHO05D006795 1.5e-57 226.9 207 61.4
FAN14G0578 Fragaria x ananassa HOM05D005382 ORTHO05D006795 2.6e-57 226.1 194 66.0
SGA_v2.0_scaffold515G52664 Striga asiatica HOM05D003096 ORTHO05D003521 3.4e-57 225.7 210 61.0
Lsat_1_v5_gn_4_85061 Lactuca sativa HOM05D005382 ORTHO05D006795 1.3e-56 223.8 220 59.1
MSTRG.9395 Avicennia marina HOM05D005382 ORTHO05D006795 1.7e-56 223.4 197 62.4
Eucgr.F03985 Eucalyptus grandis HOM05D005382 ORTHO05D006795 1.7e-56 223.4 206 63.1
Rhsim08G0203100 Rhododendron simsii HOM05D005382 ORTHO05D006795 2.2e-56 223.0 226 57.5
TPR.G3367 Trifolium pratense HOM05D005382 ORTHO05D006795 2.9e-56 222.6 181 68.5
AUR62032996 Chenopodium quinoa HOM05D005382 ORTHO05D006795 3.8e-56 222.2 220 60.5
Solyc03g117670.4 Solanum lycopersicum HOM05D005382 ORTHO05D006795 3.8e-56 222.2 209 58.4
ClCG09G003490 Citrullus lanatus HOM05D005382 ORTHO05D006795 6.4e-56 221.5 202 60.9
Lalb_Chr25g0278731 Lupinus albus HOM05D005382 ORTHO05D006795 6.4e-56 221.5 192 63.0
CSS0039254 Camellia sinensis var. sinensis HOM05D005382 ORTHO05D006795 8.4e-56 221.1 223 56.5
Ciclev10026461m.g Citrus clementina HOM05D005382 ORTHO05D006795 1.1e-55 220.7 205 63.4
Peaxi162Scf00314g01032 Petunia axillaris HOM05D005382 ORTHO05D006795 1.4e-55 220.3 200 59.5
Sed0008280 Sechium edule HOM05D005382 ORTHO05D006795 1.4e-55 220.3 188 62.8
MSTRG.11221 Avicennia marina HOM05D005382 ORTHO05D006795 2.4e-55 219.5 227 55.9
EL10Ac8g19398 Beta vulgaris HOM05D005382 ORTHO05D006795 4.2e-55 218.8 199 64.3
Cfa001857 Carpinus fangiana HOM05D005382 ORTHO05D006795 4.2e-55 218.8 177 67.8
MELO3C023486.2 Cucumis melo HOM05D005382 ORTHO05D006795 4.2e-55 218.8 202 59.4
PSO782G0145 Papaver somniferum HOM05D005382 ORTHO05D006795 4.2e-55 218.8 205 61.5
Sc12g0008250 Simmondsia chinensis HOM05D005382 ORTHO05D006795 5.5e-55 218.4 185 63.2
Lalb_Chr01g0011991 Lupinus albus HOM05D005382 ORTHO05D006795 7.1e-55 218.0 191 63.9
GSVIVG01016103001 Vitis vinifera HOM05D005382 ORTHO05D006795 9.3e-55 217.6 194 64.4
CDE04G1090 Ceratophyllum demersum HOM05D005382 ORTHO05D006795 1.2e-54 217.2 185 64.9
Psat7g262200 Pisum sativum HOM05D005382 ORTHO05D006795 1.6e-54 216.9 182 67.0
Rhsim12G0185400 Rhododendron simsii HOM05D005382 ORTHO05D006795 2.7e-54 216.1 248 54.0
Sopen03g036580 Solanum pennellii HOM05D005382 ORTHO05D006795 3.5e-54 215.7 203 57.6
Haze_16689 Corylus avellana HOM05D005382 ORTHO05D006795 4.6e-54 215.3 155 72.9
FAN02G4537 Fragaria x ananassa HOM05D005382 ORTHO05D006795 6.0e-54 214.9 178 66.9
Duzib192G0805 Durio zibethinus HOM05D005382 ORTHO05D006795 7.9e-54 214.5 161 71.4
Prupe.3G103600 Prunus persica HOM05D005382 ORTHO05D006795 7.9e-54 214.5 148 75.7
vmacro16842 Vaccinium macrocarpon HOM05D005382 ORTHO05D006795 7.9e-54 214.5 168 70.2
Lj5A81T85 Lonicera japonica HOM05D005382 ORTHO05D006795 1.8e-53 213.4 145 76.6
PSO063G0682 Papaver somniferum HOM05D005382 ORTHO05D006795 5.1e-53 211.8 206 60.2
QL05p036845 Quercus lobata HOM05D005382 ORTHO05D006795 5.1e-53 211.8 175 65.7
SalBow1G1272 Salvia bowleyana HOM05D005382 ORTHO05D006795 5.1e-53 211.8 165 70.3
CsaV3_7G031710 Cucumis sativus L. HOM05D005382 ORTHO05D006795 1.5e-52 210.3 207 56.5
Eucgr.J03130 Eucalyptus grandis HOM05D005382 ORTHO05D006795 2.5e-52 209.5 212 57.1
Duzib235G0288 Durio zibethinus HOM05D005382 ORTHO05D006795 5.6e-52 208.4 169 66.9
SGA_v2.0_scaffold74G24593 Striga asiatica HOM05D005382 ORTHO05D006795 7.4e-52 208.0 199 57.8
TWI75G0559 Tripterygium wilfordii HOM05D005382 ORTHO05D006795 2.1e-51 206.5 197 59.4
Oeu003125.1 Olea europaea HOM05D005382 ORTHO05D006795 1.5e-49 200.3 141 75.9
AUR62034069 Chenopodium quinoa HOM05D007611 ORTHO05D006795 7.6e-49 198.0 177 63.3
Oeu051555.1 Olea europaea HOM05D005382 ORTHO05D006795 2.2e-48 196.4 163 68.1
CDE07G1687 Ceratophyllum demersum HOM05D005382 ORTHO05D006795 1.9e-47 193.4 129 76.0
PGSC0003DMG400014155 Solanum tuberosum HOM05D005382 ORTHO05D006795 2.5e-47 193.0 130 72.3
Os02g0793900 Oryza sativa ssp. japonica HOM05D005382 ORTHO05D006795 7.1e-47 191.4 200 62.0
HPP92_010348 Vanilla planifolia HOM05D005382 ORTHO05D006795 1.6e-46 190.3 204 55.4
arahy.Tifrunner.gnm1.ann1.HUQR60 Arachis hypogaea HOM05D005382 ORTHO05D006795 2.7e-46 189.5 198 57.6
arahy.Tifrunner.gnm1.ann1.7IZ6IW Arachis hypogaea HOM05D005382 ORTHO05D006795 3.5e-46 189.1 198 57.6
Zm00001eb257680 Zea mays HOM05D005382 ORTHO05D006795 4.6e-46 188.7 200 59.0
ATR0580G392 Amborella trichopoda HOM05D005382 ORTHO05D006795 1.8e-45 186.8 189 59.3
CANSAT56G2690 Cannabis sativa HOM05D005382 ORTHO05D006795 5.7e-44 181.8 146 66.4
Cpa.g.c28380.1 Carica papaya HOM05D005382 ORTHO05D006795 5.7e-44 181.8 118 78.0
SEGI_41275 Sequoiadendron giganteum HOM05D005382 ORTHO05D006795 4.1e-42 175.6 130 70.0
Mapoly0128s0009 Marchantia polymorpha HOM05D005382 ORTHO05D006795 1.5e-41 173.7 130 68.5
Pp3c16_25700 Physcomitrium patens HOM05D005382 ORTHO05D006795 2.2e-40 169.9 137 65.0
SMO145G0139 Selaginella moellendorffii HOM05D005382 ORTHO05D006795 3.2e-39 166.0 131 65.6
Pp3c25_9780 Physcomitrium patens HOM05D005382 ORTHO05D006795 5.5e-39 165.2 135 64.4
Ah.14g085670 Amaranthus hybridus HOM05D005382 ORTHO05D006795 1.1e-36 157.5 215 49.3
BcaB07g33704 Brassica carinata HOM05D005382 ORTHO05D006795 7.7e-33 144.8 78 93.6
BcaB07g33705 Brassica carinata HOM05D005382 ORTHO05D006795 7.7e-33 144.8 78 93.6
SEGI_02613 Sequoiadendron giganteum HOM05D005382 ORTHO05D006795 7.2e-31 138.3 127 61.4
Hund12559 Selenicereus undatus HOM05D005382 ORTHO05D006795 1.1e-28 131.0 144 52.8
Actinidia36864 Actinidia chinensis HOM05D005382 ORTHO05D006795 2.2e-27 126.7 209 42.1
CSS0015514 Camellia sinensis var. sinensis HOM05D005382 ORTHO05D006795 4.1e-26 122.5 72 84.7
Atru.chr1.2804_Atru.chr1.2805 Acer truncatum HOM05D005382 ORTHO05D006795 2.6e-25 119.8 213 42.7
unitig_22.g6275 Utricularia gibba HOM05D005382 ORTHO05D006795 8.8e-21 104.8 69 76.8
AagrBONN_evm.TU.Sc2ySwM_117.2014 Anthoceros agrestis HOM05D005382 ORTHO05D006795 1.9e-15 87.0 70 67.1
Actinidia26580 Actinidia chinensis HOM05D005382 ORTHO05D006795 2.1e-14 83.6 70 65.7
TPR.G1583 Trifolium pratense HOM05D005382 ORTHO05D006795 5.3e-10 68.9 45 77.8
Actinidia26581 Actinidia chinensis HOM05D005382 ORTHO05D054410 2.0e-09 67.0 138 37.0
CARHR073520 Cardamine hirsuta HOM05D005382 ORTHO05D006795 5.9e-09 65.5 45 77.8


User provided reference genes

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