Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung04163 Brassica carinata HOM05D003477 ORTHO05D004043 1.0e-35 153.3 102 100.0
BolC1t00438H Brassica oleracea HOM05D003477 ORTHO05D004043 1.5e-31 139.4 102 87.3
C01p04520 Brassica napus HOM05D003477 ORTHO05D004043 3.4e-31 138.3 102 87.3
A01p04150 Brassica napus HOM05D003477 ORTHO05D004043 5.7e-31 137.5 102 87.3
BraA01t00404Z Brassica rapa HOM05D003477 ORTHO05D004043 5.7e-31 137.5 102 87.3
Thhalv10026653m.g Eutrema salsugineum HOM05D003477 ORTHO05D004043 3.5e-28 128.3 93 96.8
AL3G46800 Arabidopsis lyrata HOM05D003477 ORTHO05D004043 8.0e-25 117.1 102 74.5
Aa31LG2G16840 Aethionema arabicum HOM05D003477 ORTHO05D004043 1.0e-24 116.7 102 60.8
Aa31LG8G13000 Aethionema arabicum HOM05D003477 ORTHO05D004043 1.0e-24 116.7 102 76.5
CARHR105430 Cardamine hirsuta HOM05D003477 ORTHO05D004043 3.0e-24 115.2 102 59.8
Sp7g32050 Schrenkiella parvula HOM05D003477 ORTHO05D004043 3.0e-24 115.2 92 92.4
AT2G15000 Arabidopsis thaliana HOM05D003477 ORTHO05D004043 6.8e-24 114.0 102 73.5
Sp3g28420 Schrenkiella parvula HOM05D003477 ORTHO05D004043 2.0e-23 112.5 102 72.5
A03p45360 Brassica napus HOM05D003477 ORTHO05D004043 4.4e-23 111.3 102 55.9
BraA03t13668Z Brassica rapa HOM05D003477 ORTHO05D004043 4.4e-23 111.3 102 55.9
AT4G34265 Arabidopsis thaliana HOM05D003477 ORTHO05D004043 1.3e-22 109.8 93 76.3
BcaC01g03075 Brassica carinata HOM05D003477 ORTHO05D004043 2.8e-22 108.6 102 60.8
C03p56260 Brassica napus HOM05D003477 ORTHO05D004043 2.8e-22 108.6 102 60.8
BolC3t17914H Brassica oleracea HOM05D003477 ORTHO05D004043 2.8e-22 108.6 102 60.8
AL7G17010 Arabidopsis lyrata HOM05D003477 ORTHO05D004043 4.9e-22 107.8 92 81.5
CARHR242520 Cardamine hirsuta HOM05D003477 ORTHO05D004043 5.4e-21 104.4 92 81.5
BcaNung04987 Brassica carinata HOM05D003477 ORTHO05D004043 9.2e-21 103.6 102 59.8
BcaC06g36034 Brassica carinata HOM05D003477 ORTHO05D004043 1.2e-20 103.2 103 73.8
Carub.0007s0610 Capsella rubella HOM05D003477 ORTHO05D004043 2.0e-20 102.4 92 62.0
BcaB08g34577 Brassica carinata HOM05D003477 ORTHO05D004043 2.7e-20 102.1 93 74.2
Thhalv10022939m.g Eutrema salsugineum HOM05D003477 ORTHO05D004043 3.8e-19 98.2 94 56.4
Dinv15774 Davidia involucrata HOM05D003477 ORTHO05D004043 6.6e-19 97.4 102 54.9
Cpa.g.sc106.115 Carica papaya HOM05D003477 ORTHO05D004043 8.6e-19 97.1 92 72.8
Carub.0003s2895 Capsella rubella HOM05D003477 ORTHO05D004043 4.3e-18 94.7 94 56.4
Migut.B00399 Erythranthe guttata HOM05D003477 ORTHO05D004043 2.8e-17 92.0 102 51.0
Duzib052G0507 Durio zibethinus HOM05D003477 ORTHO05D004043 3.6e-17 91.7 102 51.0
SGA_v2.0_scaffold32G13034 Striga asiatica HOM05D003477 ORTHO05D004043 3.6e-17 91.7 102 49.0
PGSC0003DMG400025859 Solanum tuberosum HOM05D003477 ORTHO05D004043 6.1e-17 90.9 102 50.0
CAN.G606.19 Capsicum annuum HOM05D003477 ORTHO05D004043 1.0e-16 90.1 56 75.0
SGA_v2.0_scaffold225G42992 Striga asiatica HOM05D003477 ORTHO05D004043 1.4e-16 89.7 105 50.5
Prupe.8G137400 Prunus persica HOM05D003477 ORTHO05D004043 1.8e-16 89.4 102 52.0
vmacro19455 Vaccinium macrocarpon HOM05D003477 ORTHO05D004043 2.3e-16 89.0 106 50.9
Gorai.005G234400 Gossypium raimondii HOM05D003477 ORTHO05D004043 3.0e-16 88.6 101 47.5
QL11p032673 Quercus lobata HOM05D003477 ORTHO05D004043 6.8e-16 87.4 101 51.5
A07p05410 Brassica napus HOM05D003477 ORTHO05D004043 1.2e-15 86.7 92 72.8
C07p08710 Brassica napus HOM05D003477 ORTHO05D004043 1.2e-15 86.7 92 72.8
BolC7t41282H Brassica oleracea HOM05D003477 ORTHO05D004043 1.2e-15 86.7 92 72.8
BraA07t28337Z Brassica rapa HOM05D003477 ORTHO05D004043 1.2e-15 86.7 92 72.8
Sabra16G0187400 Salix brachista HOM05D003477 ORTHO05D004043 1.2e-15 86.7 103 59.2
TAR625G0309 Trochodendron aralioides HOM05D003477 ORTHO05D004043 1.2e-15 86.7 102 48.0
BcaC01g03076 Brassica carinata HOM05D003477 ORTHO05D004043 2.0e-15 85.9 57 70.2
CDE01G0745 Ceratophyllum demersum HOM05D003477 ORTHO05D004043 2.0e-15 85.9 56 69.6
MBI04_g11440_MAGBIO Magnolia biondii HOM05D003477 ORTHO05D004043 2.0e-15 85.9 56 71.4
PSO210G4486 Papaver somniferum HOM05D003477 ORTHO05D004043 2.0e-15 85.9 97 57.7
CiPaw.05G013300 Carya illinoinensis HOM05D003477 ORTHO05D004043 2.6e-15 85.5 104 48.1
Gorai.008G021900 Gossypium raimondii HOM05D003477 ORTHO05D004043 2.6e-15 85.5 102 47.1
TAR376G0403 Trochodendron aralioides HOM05D003477 ORTHO05D004043 2.6e-15 85.5 102 50.0
ClCG05G010360 Citrullus lanatus HOM05D003477 ORTHO05D004043 4.4e-15 84.7 103 45.6
AUR62003947 Chenopodium quinoa HOM05D003477 ORTHO05D004043 9.8e-15 83.6 102 45.1
AUR62038261 Chenopodium quinoa HOM05D003477 ORTHO05D004043 9.8e-15 83.6 102 45.1
Actinidia00402 Actinidia chinensis HOM05D003477 ORTHO05D004043 1.3e-14 83.2 102 52.0
Duzib248G0529 Durio zibethinus HOM05D003477 ORTHO05D004043 1.3e-14 83.2 102 48.0
Hund16371 Selenicereus undatus HOM05D003477 ORTHO05D004043 2.2e-14 82.4 110 46.4
CDE02G3617 Ceratophyllum demersum HOM05D003477 ORTHO05D004043 3.7e-14 81.6 102 49.0
SalBow3G1026 Salvia bowleyana HOM05D003477 ORTHO05D004043 4.9e-14 81.3 106 49.1
CANSAT25G3186 Cannabis sativa HOM05D003477 ORTHO05D004043 6.4e-14 80.9 102 47.1
DCAR_001659 Daucus carota HOM05D003477 ORTHO05D004043 6.4e-14 80.9 102 49.0
Oeu013760.1 Olea europaea HOM05D003477 ORTHO05D004043 1.1e-13 80.1 102 50.0
DCAR_029094 Daucus carota HOM05D003477 ORTHO05D004043 1.8e-13 79.3 102 50.0
Lj5g0009419 Lotus japonicus HOM05D003477 ORTHO05D004043 1.8e-13 79.3 102 46.1
Sabra09G0072000 Salix brachista HOM05D003477 ORTHO05D004043 2.4e-13 79.0 102 53.9
FAN27G0803 Fragaria x ananassa HOM05D003477 ORTHO05D004043 3.2e-13 78.6 102 49.0
TWI31G0442 Tripterygium wilfordii HOM05D003477 ORTHO05D004043 4.1e-13 78.2 102 44.1
Aqoxy6G02834 Aquilegia oxysepala HOM05D003477 ORTHO05D004043 5.4e-13 77.8 108 45.4
Lsat_1_v5_gn_9_111940 Lactuca sativa HOM05D003477 ORTHO05D004043 5.4e-13 77.8 102 47.1
SalBow6G1705 Salvia bowleyana HOM05D003477 ORTHO05D004043 5.4e-13 77.8 106 48.1
GSVIVG01037899001 Vitis vinifera HOM05D003477 ORTHO05D004043 5.4e-13 77.8 46 78.3
arahy.Tifrunner.gnm1.ann1.K085P0 Arachis hypogaea HOM05D003477 ORTHO05D004043 7.0e-13 77.4 102 47.1
Sed0009886 Sechium edule HOM05D003477 ORTHO05D004043 7.0e-13 77.4 103 45.6
Nn5g30458 Nelumbo nucifera HOM05D003477 ORTHO05D004043 9.2e-13 77.0 94 51.1
PSO675G8803 Papaver somniferum HOM05D003477 ORTHO05D004043 1.2e-12 76.6 93 47.3
VMungo0720G2427 Vigna mungo HOM05D003477 ORTHO05D004043 2.7e-12 75.5 104 46.2
EL10Ac6g15680 Beta vulgaris HOM05D003477 ORTHO05D004043 3.5e-12 75.1 93 45.2
FvH4_2g04800 Fragaria vesca HOM05D003477 ORTHO05D004043 3.5e-12 75.1 102 48.0
Gohir.A03G185500 Gossypium hirsutum HOM05D003477 ORTHO05D004043 3.5e-12 75.1 92 45.7
Manes.07G066700 Manihot esculenta HOM05D003477 ORTHO05D004043 3.5e-12 75.1 93 43.0
Atru.chr5.2447 Acer truncatum HOM05D003477 ORTHO05D004043 4.6e-12 74.7 102 45.1
ClCG02G006540 Citrullus lanatus HOM05D003477 ORTHO05D004043 4.6e-12 74.7 102 41.2
MELO3C018498.2 Cucumis melo HOM05D003477 ORTHO05D004043 4.6e-12 74.7 102 44.1
FAN15G1392 Fragaria x ananassa HOM05D003477 ORTHO05D004043 4.6e-12 74.7 100 47.0
FAN20G0459 Fragaria x ananassa HOM05D003477 ORTHO05D004043 4.6e-12 74.7 102 48.0
Oeu029533.3 Olea europaea HOM05D003477 ORTHO05D004043 4.6e-12 74.7 56 64.3
PSO541G5514 Papaver somniferum HOM05D003477 ORTHO05D004043 4.6e-12 74.7 93 46.2
arahy.Tifrunner.gnm1.ann1.S3TCSS Arachis hypogaea HOM05D003477 ORTHO05D004043 6.0e-12 74.3 102 46.1
Eucgr.H02262 Eucalyptus grandis HOM05D003477 ORTHO05D004043 6.0e-12 74.3 46 67.4
Manes.10G075200 Manihot esculenta HOM05D003477 ORTHO05D004043 6.0e-12 74.3 93 41.9
Nn1g04659 Nelumbo nucifera HOM05D003477 ORTHO05D004043 6.0e-12 74.3 93 47.3
Duzib132G0501 Durio zibethinus HOM05D003477 ORTHO05D004043 7.8e-12 73.9 92 45.7
FAN24G0602 Fragaria x ananassa HOM05D003477 ORTHO05D004043 7.8e-12 73.9 102 48.0
Solyc01g107450.4 Solanum lycopersicum HOM05D003477 ORTHO05D004043 7.8e-12 73.9 92 46.7
Sopen01g049690 Solanum pennellii HOM05D003477 ORTHO05D004043 7.8e-12 73.9 92 46.7
Thecc.02G111100 Theobroma cacao HOM05D003477 ORTHO05D004043 7.8e-12 73.9 92 44.6
vmacro01991 Vaccinium macrocarpon HOM05D003477 ORTHO05D004043 7.8e-12 73.9 102 45.1
Gohir.D02G206836 Gossypium hirsutum HOM05D003477 ORTHO05D004043 1.0e-11 73.6 92 44.6
TWI79G1417 Tripterygium wilfordii HOM05D003477 ORTHO05D004043 1.0e-11 73.6 93 47.3
TAR381G0852 Trochodendron aralioides HOM05D003477 ORTHO05D004043 1.0e-11 73.6 92 48.9
Potri.001G298800 Populus trichocarpa HOM05D003477 ORTHO05D004043 1.3e-11 73.2 93 48.4
Gohir.D12G021600 Gossypium hirsutum HOM05D003477 ORTHO05D004043 2.3e-11 72.4 92 44.6
MD10G1099700 Malus domestica HOM05D003477 ORTHO05D004043 3.9e-11 71.6 92 46.7
Psat6g216680 Pisum sativum HOM05D003477 ORTHO05D004043 3.9e-11 71.6 54 61.1
ATR0315G039 Amborella trichopoda HOM05D003477 ORTHO05D004043 8.6e-11 70.5 52 63.5
Gohir.A12G021300 Gossypium hirsutum HOM05D003477 ORTHO05D004043 8.6e-11 70.5 92 43.5
Medtr1g107085 Medicago truncatula HOM05D003477 ORTHO05D004043 8.6e-11 70.5 106 46.2
Rhsim05G0089200 Rhododendron simsii HOM05D003477 ORTHO05D004043 8.6e-11 70.5 95 48.4
Sed0015852 Sechium edule HOM05D003477 ORTHO05D004043 8.6e-11 70.5 93 43.0
Ciclev10029666m.g Citrus clementina HOM05D003477 ORTHO05D004043 1.1e-10 70.1 103 43.7
arahy.Tifrunner.gnm1.ann1.VE84TY Arachis hypogaea HOM05D003477 ORTHO05D004043 4.3e-10 68.2 94 42.6
Ca_24733_v3 Cicer arietinum L. HOM05D002634 ORTHO05D003100 4.3e-10 68.2 93 47.3
PSO675G3465 Papaver somniferum HOM05D003477 ORTHO05D004043 4.3e-10 68.2 92 44.6
CSS0007946 Camellia sinensis var. sinensis HOM05D003477 ORTHO05D004043 5.6e-10 67.8 92 45.7
CSS0046932 Camellia sinensis var. sinensis HOM05D003477 ORTHO05D004043 5.6e-10 67.8 92 45.7
Nitab4.5_0001439g0010 Nicotiana tabacum HOM05D003477 ORTHO05D004043 5.6e-10 67.8 52 61.5
Hma1.2p1_1023F.1_g249010 Hydrangea macrophylla HOM05D003477 ORTHO05D004043 9.5e-10 67.0 92 47.8
RcHm_v2.0_Chr2g0107061 Rosa chinensis HOM05D003477 ORTHO05D004043 9.5e-10 67.0 97 40.2
Sc16g0001450 Simmondsia chinensis HOM05D003477 ORTHO05D004043 9.5e-10 67.0 93 39.8
Dinv42204 Davidia involucrata HOM05D003477 ORTHO05D004043 1.2e-09 66.6 92 50.0
Peaxi162Scf00945g00014 Petunia axillaris HOM05D003477 ORTHO05D004043 1.6e-09 66.2 52 61.5
Psat2g169360 Pisum sativum HOM05D003477 ORTHO05D004043 2.1e-09 65.9 93 44.1
Potri.009G093400 Populus trichocarpa HOM05D003477 ORTHO05D004043 2.1e-09 65.9 94 53.2
Sopen02g037390 Solanum pennellii HOM05D003477 ORTHO05D004043 2.1e-09 65.9 52 59.6
Sed0021400 Sechium edule HOM05D003477 ORTHO05D004043 2.8e-09 65.5 93 40.9
PGSC0003DMG400024979 Solanum tuberosum HOM05D003477 ORTHO05D004043 2.8e-09 65.5 52 59.6
arahy.Tifrunner.gnm1.ann1.T63M72 Arachis hypogaea HOM05D003477 ORTHO05D004043 3.6e-09 65.1 89 43.8
Solyc02g092830.4 Solanum lycopersicum HOM05D003477 ORTHO05D004043 3.6e-09 65.1 51 58.8
MELO3C031999.2 Cucumis melo HOM05D003477 ORTHO05D013069 8.0e-09 63.9 50 62.0
Nitab4.5_0001119g0150 Nicotiana tabacum HOM05D003477 ORTHO05D004043 8.0e-09 63.9 49 61.2
Phvul.002G014500 Phaseolus vulgaris HOM05D003477 ORTHO05D004043 8.0e-09 63.9 94 42.6
QL06p040030 Quercus lobata HOM05D003477 ORTHO05D004043 8.0e-09 63.9 45 57.8
Cc07_g06600 Coffea canephora HOM05D003477 ORTHO05D004043 1.1e-08 63.5 52 61.5
Actinidia27974 Actinidia chinensis HOM05D003477 ORTHO05D004043 1.4e-08 63.2 38 76.3
Actinidia34393 Actinidia chinensis HOM05D003477 ORTHO05D004043 1.8e-08 62.8 93 46.2
Lj2g0006602 Lotus japonicus HOM05D003477 ORTHO05D004043 2.3e-08 62.4 45 62.2
Prupe.6G226300 Prunus persica HOM05D003477 ORTHO05D004043 2.3e-08 62.4 93 35.5
ECA240G1244 Erigeron canadensis HOM05D003477 ORTHO05D004043 4.0e-08 61.6 92 46.7
DCAR_025766 Daucus carota HOM05D003477 ORTHO05D004043 5.2e-08 61.2 40 65.0
MD02G1179900 Malus domestica HOM05D003477 ORTHO05D004043 5.2e-08 61.2 95 38.9
Medtr5g016330 Medicago truncatula HOM05D003477 ORTHO05D004043 5.2e-08 61.2 89 43.8
RcHm_v2.0_Chr6g0254531 Rosa chinensis HOM05D003477 ORTHO05D004043 5.2e-08 61.2 93 46.2
Cc02_g19410 Coffea canephora HOM05D003477 ORTHO05D004043 6.8e-08 60.8 92 39.1
Dinv26882 Davidia involucrata HOM05D003477 ORTHO05D004043 6.8e-08 60.8 91 44.0
FAN23G2670 Fragaria x ananassa HOM05D003477 ORTHO05D004043 6.8e-08 60.8 46 56.5
PSO675G6764 Papaver somniferum HOM05D003477 ORTHO05D004043 6.8e-08 60.8 92 40.2
Sc08g0001310 Simmondsia chinensis HOM05D003477 ORTHO05D004043 6.8e-08 60.8 95 66.3
CsaV3_7G008070 Cucumis sativus L. HOM05D010572 ORTHO05D012753 8.9e-08 60.5 97 38.1
Duzib248G0862 Durio zibethinus HOM05D003477 ORTHO05D004043 8.9e-08 60.5 89 39.3
FvH4_1g16960 Fragaria vesca HOM05D003477 ORTHO05D004043 1.2e-07 60.1 94 37.2
CsaV3_3G018130 Cucumis sativus L. HOM05D003477 ORTHO05D004043 2.0e-07 59.3 94 40.4
HanXRQChr03g0068771 Helianthus annuus HOM05D003477 ORTHO05D004043 2.6e-07 58.9 43 65.1
HanXRQChr09g0251061 Helianthus annuus HOM05D003477 ORTHO05D004043 2.6e-07 58.9 44 65.9
Lalb_Chr21g0308261 Lupinus albus HOM05D003477 ORTHO05D004043 2.6e-07 58.9 94 43.6
Lalb_Chr02g0145231 Lupinus albus HOM05D003477 ORTHO05D004043 3.4e-07 58.5 88 43.2
Ca_11060_v3 Cicer arietinum L. HOM05D003477 ORTHO05D004043 4.4e-07 58.2 95 41.1
FAN26G2600 Fragaria x ananassa HOM05D003477 ORTHO05D004043 4.4e-07 58.2 42 59.5
FAN28G0243 Fragaria x ananassa HOM05D003477 ORTHO05D004043 4.4e-07 58.2 94 36.2
Phvul.007G041500 Phaseolus vulgaris HOM05D003477 ORTHO05D004043 5.8e-07 57.8 94 40.4
SEGI_29263 Sequoiadendron giganteum HOM05D006762 ORTHO05D003505 5.8e-07 57.8 58 55.2
Cfa004078 Carpinus fangiana HOM05D003477 ORTHO05D004043 7.5e-07 57.4 47 57.4
Rhsim11G0157900 Rhododendron simsii HOM05D003477 ORTHO05D004043 7.5e-07 57.4 92 40.2
Cfa004605 Carpinus fangiana HOM05D003477 ORTHO05D004043 9.8e-07 57.0 42 66.7
Haze_10200 Corylus avellana HOM05D003477 ORTHO05D004043 9.8e-07 57.0 42 66.7
Nitab4.5_0003699g0030 Nicotiana tabacum HOM05D003477 ORTHO05D004043 9.8e-07 57.0 46 63.0
TPR.G19065 Trifolium pratense HOM05D003477 ORTHO05D004043 1.3e-06 56.6 44 61.4
FAN19G2238 Fragaria x ananassa HOM05D003477 ORTHO05D004043 1.7e-06 56.2 90 37.8
CSS0020585 Camellia sinensis var. sinensis HOM05D003477 ORTHO05D004043 2.9e-06 55.5 93 35.5
Ciclev10027007m.g Citrus clementina HOM05D003477 ORTHO05D004043 2.9e-06 55.5 40 57.5
ECA238G3264 Erigeron canadensis HOM05D003477 ORTHO05D004043 2.9e-06 55.5 39 61.5
Glyma.01G190500 Glycine max HOM05D003477 ORTHO05D004043 2.9e-06 55.5 93 39.8
Rhsim11G0156400 Rhododendron simsii HOM05D003477 ORTHO05D004043 2.9e-06 55.5 92 39.1
vmacro21548 Vaccinium macrocarpon HOM05D006762 ORTHO05D003505 2.9e-06 55.5 52 51.9
Atru.chr3.235 Acer truncatum HOM05D003477 ORTHO05D004043 3.7e-06 55.1 91 38.5
Actinidia16453 Actinidia chinensis HOM05D003477 ORTHO05D004043 3.7e-06 55.1 37 67.6
Actinidia21247 Actinidia chinensis HOM05D003477 ORTHO05D004043 3.7e-06 55.1 37 67.6
Sed0004332 Sechium edule HOM05D003477 ORTHO05D004043 3.7e-06 55.1 46 58.7
VMungo1215G1682 Vigna mungo HOM05D002634 ORTHO05D003100 4.9e-06 54.7 40 60.0
GSVIVG01006992001 Vitis vinifera HOM05D006762 ORTHO05D003505 6.4e-06 54.3 52 51.9
AL7G37400 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 8.3e-06 53.9 53 52.8


User provided reference genes

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