Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung04141 Brassica carinata HOM05D001629 ORTHO05D003842 6.3e-42 173.7 89 100.0
AL1G61070 Arabidopsis lyrata HOM05D001629 ORTHO05D003842 2.6e-19 98.6 71 77.5
Sp1g39320 Schrenkiella parvula HOM05D001629 ORTHO05D003842 2.6e-19 98.6 71 77.5
CARHR042910 Cardamine hirsuta HOM05D001629 ORTHO05D003842 4.4e-19 97.8 71 77.5
AT1G52750 Arabidopsis thaliana HOM05D001629 ORTHO05D003842 5.7e-19 97.4 71 76.1
BcaC08g43449 Brassica carinata HOM05D001629 ORTHO05D003842 2.2e-18 95.5 71 74.6
C06p08200 Brassica napus HOM05D001629 ORTHO05D003842 2.2e-18 95.5 71 74.6
BolC6t35901H Brassica oleracea HOM05D001629 ORTHO05D003842 2.2e-18 95.5 71 74.6
BraA06t23383Z Brassica rapa HOM05D001629 ORTHO05D003842 2.8e-18 95.1 71 74.6
Aa31LG10G2290 Aethionema arabicum HOM05D001629 ORTHO05D003842 1.1e-17 93.2 71 70.4
Thhalv10012329m.g Eutrema salsugineum HOM05D001629 ORTHO05D003842 1.1e-17 93.2 71 73.2
A06p01650 Brassica napus HOM05D001629 ORTHO05D003842 1.4e-17 92.8 75 70.7
THA.LOC104815542 Tarenaya hassleriana HOM05D001629 ORTHO05D003842 2.0e-16 89.0 71 67.6
Carub.0001s4183 Capsella rubella HOM05D001629 ORTHO05D003842 2.9e-15 85.1 71 67.6
Dinv38080 Davidia involucrata HOM05D001629 ORTHO05D003842 1.9e-14 82.4 70 64.3
Actinidia01774 Actinidia chinensis HOM05D001629 ORTHO05D003842 4.2e-14 81.3 70 60.0
Actinidia15809 Actinidia chinensis HOM05D001629 ORTHO05D003842 4.2e-14 81.3 70 61.4
vmacro18952 Vaccinium macrocarpon HOM05D001629 ORTHO05D003842 5.5e-14 80.9 70 61.4
Ciclev10025112m.g Citrus clementina HOM05D001629 ORTHO05D003842 7.2e-14 80.5 70 64.3
Hma1.2p1_0515F.1_g170350 Hydrangea macrophylla HOM05D001629 ORTHO05D003842 1.6e-13 79.3 70 60.0
Lj5A67T54 Lonicera japonica HOM05D001629 ORTHO05D003842 1.6e-13 79.3 70 61.4
Potri.001G174900 Populus trichocarpa HOM05D001629 ORTHO05D003842 2.1e-13 79.0 70 60.0
Rhsim08G0217400 Rhododendron simsii HOM05D001629 ORTHO05D003842 2.1e-13 79.0 70 58.6
Potri.003G059400 Populus trichocarpa HOM05D001629 ORTHO05D003842 2.8e-13 78.6 70 60.0
Atru.chr1.3158 Acer truncatum HOM05D001629 ORTHO05D003842 4.7e-13 77.8 69 60.9
FvH4_6g30590 Fragaria vesca HOM05D001629 ORTHO05D003842 6.1e-13 77.4 70 61.4
FAN14G3427 Fragaria x ananassa HOM05D001629 ORTHO05D003842 6.1e-13 77.4 70 61.4
Lj9A503T44 Lonicera japonica HOM05D001629 ORTHO05D003842 6.1e-13 77.4 70 62.9
PSO017G4027 Papaver somniferum HOM05D001629 ORTHO05D003842 6.1e-13 77.4 70 64.3
PSO170G0320 Papaver somniferum HOM05D001629 ORTHO05D003842 6.1e-13 77.4 70 64.3
Aa31LG4G560 Aethionema arabicum HOM05D001629 ORTHO05D003842 8.0e-13 77.0 70 61.4
CSS0008324 Camellia sinensis var. sinensis HOM05D001629 ORTHO05D003842 8.0e-13 77.0 70 58.6
Cpa.g.sc10.201 Carica papaya HOM05D001629 ORTHO05D003842 8.0e-13 77.0 70 60.0
THA.LOC104812487 Tarenaya hassleriana HOM05D001629 ORTHO05D003842 8.0e-13 77.0 70 62.9
Cc04_g03830 Coffea canephora HOM05D001629 ORTHO05D003842 1.0e-12 76.6 70 60.0
Manes.04G119000 Manihot esculenta HOM05D001629 ORTHO05D003842 1.0e-12 76.6 70 61.4
Sabra03G0034000 Salix brachista HOM05D001629 ORTHO05D003842 1.0e-12 76.6 70 58.6
Thecc.06G077000 Theobroma cacao HOM05D001629 ORTHO05D003842 1.0e-12 76.6 70 60.0
CANSAT56G2113 Cannabis sativa HOM05D001629 ORTHO05D003842 1.4e-12 76.3 70 62.9
MD17G1202000 Malus domestica HOM05D001629 ORTHO05D003842 1.4e-12 76.3 70 60.0
Nitab4.5_0000410g0370 Nicotiana tabacum HOM05D001629 ORTHO05D003842 1.4e-12 76.3 70 58.6
Nitab4.5_0005786g0020 Nicotiana tabacum HOM05D001629 ORTHO05D003842 1.4e-12 76.3 70 58.6
Aqoxy7G01988 Aquilegia oxysepala HOM05D001629 ORTHO05D003842 1.8e-12 75.9 70 62.9
Peaxi162Scf00207g00740 Petunia axillaris HOM05D001629 ORTHO05D003842 1.8e-12 75.9 70 58.6
PGR102G2868 Punica granatum HOM05D001629 ORTHO05D003842 1.8e-12 75.9 70 60.0
TWI75G0218 Tripterygium wilfordii HOM05D001629 ORTHO05D003842 1.8e-12 75.9 70 58.6
CSS0040650 Camellia sinensis var. sinensis HOM05D001629 ORTHO05D003842 2.3e-12 75.5 70 57.1
CsaV3_7G032780 Cucumis sativus L. HOM05D001629 ORTHO05D003842 2.3e-12 75.5 74 58.1
FAN02G1507 Fragaria x ananassa HOM05D001629 ORTHO05D003842 2.3e-12 75.5 70 60.0
GSVIVG01017215001 Vitis vinifera HOM05D001629 ORTHO05D003842 2.3e-12 75.5 70 57.1
COL.COLO4_12865 Corchorus olitorius HOM05D001629 ORTHO05D003842 3.0e-12 75.1 70 58.6
FAN09G3957 Fragaria x ananassa HOM05D001629 ORTHO05D003842 3.0e-12 75.1 70 60.0
MD09G1218700 Malus domestica HOM05D001629 ORTHO05D003842 3.0e-12 75.1 70 58.6
Solyc03g119990.4 Solanum lycopersicum HOM05D001629 ORTHO05D003842 3.0e-12 75.1 70 57.1
Sopen03g038870 Solanum pennellii HOM05D001629 ORTHO05D003842 3.0e-12 75.1 70 57.1
AL1G27610 Arabidopsis lyrata HOM05D001629 ORTHO05D003842 4.0e-12 74.7 70 58.6
Duzib235G1342 Durio zibethinus HOM05D001629 ORTHO05D003842 4.0e-12 74.7 70 60.0
Sp1g13850 Schrenkiella parvula HOM05D001629 ORTHO05D003842 4.0e-12 74.7 70 58.6
Sc12g0008950 Simmondsia chinensis HOM05D001629 ORTHO05D003842 4.0e-12 74.7 86 51.2
Sed0020470 Sechium edule HOM05D001629 ORTHO05D003842 5.2e-12 74.3 74 58.1
BcaC05g25626 Brassica carinata HOM05D001629 ORTHO05D003842 6.8e-12 73.9 70 58.6
A06p11550 Brassica napus HOM05D001629 ORTHO05D003842 6.8e-12 73.9 70 58.6
C05p13680 Brassica napus HOM05D001629 ORTHO05D003842 6.8e-12 73.9 70 58.6
BolC5t30105H Brassica oleracea HOM05D001629 ORTHO05D003842 6.8e-12 73.9 70 58.6
BraA06t24329Z Brassica rapa HOM05D001629 ORTHO05D003842 6.8e-12 73.9 70 58.6
CAN.G438.91 Capsicum annuum HOM05D001629 ORTHO05D003842 6.8e-12 73.9 70 57.1
CiPaw.01G243300 Carya illinoinensis HOM05D001629 ORTHO05D003842 6.8e-12 73.9 70 60.0
RcHm_v2.0_Chr2g0137001 Rosa chinensis HOM05D001629 ORTHO05D003842 6.8e-12 73.9 70 58.6
ATR0716G028 Amborella trichopoda HOM05D001629 ORTHO05D003842 8.9e-12 73.6 70 58.6
AT1G15490 Arabidopsis thaliana HOM05D001629 ORTHO05D003842 8.9e-12 73.6 70 58.6
BcaC03g15987 Brassica carinata HOM05D001629 ORTHO05D003842 8.9e-12 73.6 70 61.4
C02p37440 Brassica napus HOM05D001629 ORTHO05D003842 8.9e-12 73.6 70 61.4
BolC2t09756H Brassica oleracea HOM05D001629 ORTHO05D003842 8.9e-12 73.6 70 61.4
BraA02t07361Z Brassica rapa HOM05D001629 ORTHO05D003842 8.9e-12 73.6 70 61.4
Sabra01G0137400 Salix brachista HOM05D001629 ORTHO05D003842 8.9e-12 73.6 68 57.4
TAR625G1051 Trochodendron aralioides HOM05D001629 ORTHO05D003842 8.9e-12 73.6 70 58.6
Eucgr.J03032 Eucalyptus grandis HOM05D001629 ORTHO05D003842 1.2e-11 73.2 71 57.7
Gohir.A02G123600 Gossypium hirsutum HOM05D001629 ORTHO05D003842 1.2e-11 73.2 70 57.1
Lsat_1_v5_gn_5_132821 Lactuca sativa HOM05D001629 ORTHO05D003842 1.2e-11 73.2 70 60.0
THA.LOC104808220 Tarenaya hassleriana HOM05D001629 ORTHO05D003842 1.2e-11 73.2 70 58.6
TAR636G3140 Trochodendron aralioides HOM05D001629 ORTHO05D003842 1.2e-11 73.2 70 58.6
BcaB05g25283 Brassica carinata HOM05D001629 ORTHO05D003842 1.5e-11 72.8 70 61.4
Gohir.A05G124200 Gossypium hirsutum HOM05D001629 ORTHO05D003842 1.5e-11 72.8 70 57.1
Gohir.D03G065800 Gossypium hirsutum HOM05D001629 ORTHO05D003842 1.5e-11 72.8 70 57.1
Gohir.D05G125200 Gossypium hirsutum HOM05D001629 ORTHO05D003842 1.5e-11 72.8 70 57.1
Gorai.002G056600 Gossypium raimondii HOM05D001629 ORTHO05D003842 1.5e-11 72.8 70 57.1
Gorai.009G129200 Gossypium raimondii HOM05D001629 ORTHO05D003842 1.5e-11 72.8 70 57.1
Prupe.3G077700 Prunus persica HOM05D001629 ORTHO05D003842 1.5e-11 72.8 70 58.6
AL2G41220 Arabidopsis lyrata HOM05D001629 ORTHO05D003842 2.0e-11 72.4 70 60.0
Nn2g11902 Nelumbo nucifera HOM05D001629 ORTHO05D003842 2.0e-11 72.4 70 57.1
Gohir.D10G073900 Gossypium hirsutum HOM05D001629 ORTHO05D003842 2.6e-11 72.0 70 57.1
Gorai.011G079700 Gossypium raimondii HOM05D001629 ORTHO05D003842 2.6e-11 72.0 70 57.1
MBI04_g00951_MAGBIO Magnolia biondii HOM05D001629 ORTHO05D003842 2.6e-11 72.0 70 60.0
PGSC0003DMG400005696 Solanum tuberosum HOM05D001629 ORTHO05D003842 2.6e-11 72.0 70 55.7
AT1G80280 Arabidopsis thaliana HOM05D001629 ORTHO05D003842 3.4e-11 71.6 70 60.0
Carub.0002s2728 Capsella rubella HOM05D001629 ORTHO05D003842 3.4e-11 71.6 70 60.0
Haze_16500 Corylus avellana HOM05D001629 ORTHO05D003842 3.4e-11 71.6 70 57.1
Gohir.A10G077700 Gossypium hirsutum HOM05D001629 ORTHO05D003842 3.4e-11 71.6 70 57.1
Manes.11G049200 Manihot esculenta HOM05D001629 ORTHO05D003842 3.4e-11 71.6 70 58.6
Sopen06g025170 Solanum pennellii HOM05D001629 ORTHO05D003842 3.4e-11 71.6 70 55.7
TAR626G1732 Trochodendron aralioides HOM05D001629 ORTHO05D003842 3.4e-11 71.6 70 57.1
Migut.D01045 Erythranthe guttata HOM05D001629 ORTHO05D003842 4.4e-11 71.2 70 57.1
Glyma.08G209200 Glycine max HOM05D001629 ORTHO05D003842 4.4e-11 71.2 70 58.6
Nn8g39343 Nelumbo nucifera HOM05D001629 ORTHO05D003842 4.4e-11 71.2 70 55.7
Hund00570 Selenicereus undatus HOM05D001629 ORTHO05D003842 4.4e-11 71.2 74 54.1
Solyc06g067890.3 Solanum lycopersicum HOM05D001629 ORTHO05D003842 5.7e-11 70.9 70 54.3
PGSC0003DMG400028548 Solanum tuberosum HOM05D001629 ORTHO05D003842 5.7e-11 70.9 70 54.3
BcaC05g25500 Brassica carinata HOM05D001629 ORTHO05D003842 7.5e-11 70.5 69 56.5
ECA234G2115 Erigeron canadensis HOM05D001629 ORTHO05D003842 7.5e-11 70.5 70 55.7
HanXRQChr16g0504231 Helianthus annuus HOM05D001629 ORTHO05D003842 7.5e-11 70.5 70 57.1
arahy.Tifrunner.gnm1.ann1.62DI5E Arachis hypogaea HOM05D001629 ORTHO05D003842 9.8e-11 70.1 70 58.6
arahy.Tifrunner.gnm1.ann1.I8612F Arachis hypogaea HOM05D001629 ORTHO05D003842 9.8e-11 70.1 70 58.6
CARHR074210 Cardamine hirsuta HOM05D001629 ORTHO05D003842 9.8e-11 70.1 70 58.6
MELO3C023388.2 Cucumis melo HOM05D001629 ORTHO05D003842 9.8e-11 70.1 70 57.1
Nitab4.5_0003512g0010 Nicotiana tabacum HOM05D001629 ORTHO05D003842 9.8e-11 70.1 67 55.2
Sp5g35530 Schrenkiella parvula HOM05D001629 ORTHO05D003842 9.8e-11 70.1 70 57.1
TAR383G0187 Trochodendron aralioides HOM05D001629 ORTHO05D003842 9.8e-11 70.1 74 54.1
Lsat_1_v5_gn_1_33701 Lactuca sativa HOM05D001629 ORTHO05D003842 1.3e-10 69.7 70 55.7
Phvul.010G153000 Phaseolus vulgaris HOM05D001629 ORTHO05D003842 1.3e-10 69.7 70 57.1
VMungo0331G0430 Vigna mungo HOM05D001629 ORTHO05D003842 1.3e-10 69.7 70 57.1
ClCG09G002540 Citrullus lanatus HOM05D001629 ORTHO05D003842 2.2e-10 68.9 70 55.7
Glyma.07G033000 Glycine max HOM05D001629 ORTHO05D003842 2.2e-10 68.9 70 57.1
HanXRQChr10g0304531 Helianthus annuus HOM05D001629 ORTHO05D003842 2.2e-10 68.9 70 55.7
Nitab4.5_0000620g0170 Nicotiana tabacum HOM05D001629 ORTHO05D003842 2.2e-10 68.9 67 53.7
Peaxi162Scf00015g00523 Petunia axillaris HOM05D001629 ORTHO05D003842 2.2e-10 68.9 67 55.2
HPP92_023330 Vanilla planifolia HOM05D001629 ORTHO05D003842 3.7e-10 68.2 70 54.3
AUR62011590 Chenopodium quinoa HOM05D001629 ORTHO05D003842 4.9e-10 67.8 70 51.4
MSTRG.9443 Avicennia marina HOM05D001629 ORTHO05D003842 6.3e-10 67.4 70 57.1
Cfa002025 Carpinus fangiana HOM05D001629 ORTHO05D003842 6.3e-10 67.4 70 52.9
Thhalv10018250m.g Eutrema salsugineum HOM05D001629 ORTHO05D003842 6.3e-10 67.4 70 55.7
HanXRQChr02g0032521 Helianthus annuus HOM05D001629 ORTHO05D003842 6.3e-10 67.4 74 51.4
Hund06591 Selenicereus undatus HOM05D001629 ORTHO05D003842 6.3e-10 67.4 70 51.4
SGA_v2.0_scaffold37G14797 Striga asiatica HOM05D001629 ORTHO05D003842 6.3e-10 67.4 70 54.3
Psat7g254800 Pisum sativum HOM05D001629 ORTHO05D003842 1.1e-09 66.6 70 55.7
QL05p027122 Quercus lobata HOM05D001629 ORTHO05D003842 1.1e-09 66.6 70 51.4
SEGI_32935 Sequoiadendron giganteum HOM05D001629 ORTHO05D003842 1.1e-09 66.6 70 50.0
CAN.G395.37 Capsicum annuum HOM05D001629 ORTHO05D003842 1.4e-09 66.2 70 54.3
Oeu052307.2 Olea europaea HOM05D001629 ORTHO05D003842 1.4e-09 66.2 70 51.4
Os01g0647700 Oryza sativa ssp. japonica HOM05D001629 ORTHO05D003842 1.4e-09 66.2 74 52.7
MSTRG.22718 Avicennia marina HOM05D001629 ORTHO05D003842 1.8e-09 65.9 70 54.3
AUR62016405 Chenopodium quinoa HOM05D001629 ORTHO05D003842 1.8e-09 65.9 66 53.0
Ah.01g020970 Amaranthus hybridus HOM05D001629 ORTHO05D003842 2.4e-09 65.5 70 51.4
Ca_07176_v3 Cicer arietinum L. HOM05D001629 ORTHO05D003842 2.4e-09 65.5 70 55.7
ECA247G3184 Erigeron canadensis HOM05D000006 ORTHO05D003842 2.4e-09 65.5 70 55.7
Medtr4g011440 Medicago truncatula HOM05D001629 ORTHO05D003842 2.4e-09 65.5 70 54.3
TPR.G38620 Trifolium pratense HOM05D001629 ORTHO05D003842 2.4e-09 65.5 70 54.3
CDE01G0261 Ceratophyllum demersum HOM05D001629 ORTHO05D003842 3.1e-09 65.1 70 51.4
CDE02G3382 Ceratophyllum demersum HOM05D001629 ORTHO05D003842 3.1e-09 65.1 70 51.4
Lj3g0002261 Lotus japonicus HOM05D001629 ORTHO05D003842 4.1e-09 64.7 70 54.3
Zm00001eb158470 Zea mays HOM05D001629 ORTHO05D003842 4.1e-09 64.7 70 52.9
EL10Ac9g21963 Beta vulgaris HOM05D001629 ORTHO05D003842 5.4e-09 64.3 70 50.0
Migut.I00812 Erythranthe guttata HOM05D001629 ORTHO05D003842 7.0e-09 63.9 70 54.3
Lj3g0014600 Lotus japonicus HOM05D001629 ORTHO05D003842 7.0e-09 63.9 70 54.3
Lalb_Chr22g0351061 Lupinus albus HOM05D001629 ORTHO05D003842 7.0e-09 63.9 70 54.3
Oeu020518.1 Olea europaea HOM05D001629 ORTHO05D003842 1.2e-08 63.2 70 50.0
Oeu015230.1 Olea europaea HOM05D001629 ORTHO05D003842 2.0e-08 62.4 70 50.0
Haze_16498 Corylus avellana HOM05D001629 ORTHO05D003842 2.7e-08 62.0 66 53.0
Glyma.15G011400 Glycine max HOM05D001629 ORTHO05D003842 2.7e-08 62.0 70 52.9
HanXRQChr04g0096811 Helianthus annuus HOM05D001629 ORTHO05D003842 2.7e-08 62.0 70 50.0
Phvul.005G174100 Phaseolus vulgaris HOM05D001629 ORTHO05D003842 2.7e-08 62.0 70 52.9
SMO172G0187 Selaginella moellendorffii HOM05D001629 ORTHO05D003842 2.7e-08 62.0 74 50.0
SGA_v2.0_scaffold16G07628 Striga asiatica HOM05D001629 ORTHO05D003842 2.7e-08 62.0 70 52.9
TPR.G37153 Trifolium pratense HOM05D001629 ORTHO05D003842 2.7e-08 62.0 70 54.3
Psat0s2701g0040 Pisum sativum HOM05D001629 ORTHO05D003842 3.5e-08 61.6 70 52.9
Lalb_Chr14g0373601 Lupinus albus HOM05D001629 ORTHO05D003842 4.5e-08 61.2 70 51.4
Medtr2g102800 Medicago truncatula HOM05D001629 ORTHO05D003842 4.5e-08 61.2 70 52.9
VMungo1080G0185 Vigna mungo HOM05D001629 ORTHO05D003842 1.0e-07 60.1 70 51.4
Pp3c27_6880 Physcomitrium patens HOM05D001629 ORTHO05D003842 1.3e-07 59.7 75 46.7
Lalb_Chr04g0262531 Lupinus albus HOM05D001629 ORTHO05D003842 1.7e-07 59.3 70 48.6
Lalb_Chr07g0177431 Lupinus albus HOM05D001629 ORTHO05D003842 1.7e-07 59.3 70 48.6
Pp3c6_29370 Physcomitrium patens HOM05D001629 ORTHO05D003842 2.9e-07 58.5 71 40.8
Pp3c6_29375 Physcomitrium patens HOM05D001629 ORTHO05D003842 2.9e-07 58.5 71 40.8
SEGI_35183 Sequoiadendron giganteum HOM05D001629 ORTHO05D003842 3.9e-07 58.2 70 47.1
SGA_v2.0_scaffold16G07626 Striga asiatica HOM05D000070 ORTHO05D003491 3.9e-07 58.2 68 52.9
Glyma.13G362400 Glycine max HOM05D001629 ORTHO05D003842 6.6e-07 57.4 70 50.0
Pp3c5_1730 Physcomitrium patens HOM05D001629 ORTHO05D003842 8.6e-07 57.0 77 41.6
Ca_01093_v3 Cicer arietinum L. HOM05D001629 ORTHO05D003842 1.5e-06 56.2 70 47.1
DCAR_025468 Daucus carota HOM05D001629 ORTHO05D003842 4.3e-06 54.7 70 45.7
DCAR_025609 Daucus carota HOM05D001629 ORTHO05D003842 4.3e-06 54.7 70 45.7


User provided reference genes

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