Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung04136 Brassica carinata HOM05D004099 ORTHO05D004777 5.1e-82 307.8 163 100.0
BcaNung04135 Brassica carinata HOM05D004099 ORTHO05D004777 1.1e-36 157.1 121 81.0
C07p58690 Brassica napus HOM05D004099 ORTHO05D004777 1.1e-36 157.1 121 81.0
BolC7t46319H Brassica oleracea HOM05D004099 ORTHO05D004777 1.1e-36 157.1 121 81.0
A03p60800 Brassica napus HOM05D004099 ORTHO05D004777 7.5e-33 144.4 122 75.4
BraA03t15116Z Brassica rapa HOM05D004099 ORTHO05D004777 7.5e-33 144.4 122 75.4
Thhalv10026165m.g Eutrema salsugineum HOM05D004099 ORTHO05D004777 6.1e-27 124.8 125 72.0
Sp7g29350 Schrenkiella parvula HOM05D004099 ORTHO05D004777 3.0e-26 122.5 126 71.4
BcaNung04134 Brassica carinata HOM05D004099 ORTHO05D004777 8.9e-26 120.9 133 63.9
A08p18580 Brassica napus HOM05D004099 ORTHO05D004777 1.1e-20 104.0 126 63.5
C03p87870 Brassica napus HOM05D004099 ORTHO05D004777 1.5e-20 103.6 126 63.5
BolC3t21102H Brassica oleracea HOM05D004099 ORTHO05D004777 1.5e-20 103.6 126 63.5
BcaC01g01082 Brassica carinata HOM05D004099 ORTHO05D004777 3.3e-20 102.4 131 61.1
THA.LOC104819932 Tarenaya hassleriana HOM05D004099 ORTHO05D004777 5.6e-20 101.7 124 62.9
BraA08t33820Z Brassica rapa HOM05D004099 ORTHO05D004777 2.8e-19 99.4 126 61.9
AL7G20550 Arabidopsis lyrata HOM05D004099 ORTHO05D004777 6.1e-19 98.2 104 64.4
Thhalv10000300m.g Eutrema salsugineum HOM05D004099 ORTHO05D004777 8.0e-19 97.8 151 51.7
CARHR239380 Cardamine hirsuta HOM05D004099 ORTHO05D004777 6.8e-18 94.7 116 60.3
BcaNung01519 Brassica carinata HOM05D004099 ORTHO05D004777 2.6e-17 92.8 52 94.2
Thhalv10029499m.g Eutrema salsugineum HOM05D004099 ORTHO05D004777 3.4e-17 92.4 156 47.4
AT4G31510 Arabidopsis thaliana HOM05D004099 ORTHO05D004777 9.8e-17 90.9 110 60.9
Sp4g03550 Schrenkiella parvula HOM05D004099 ORTHO05D004777 1.7e-16 90.1 152 52.0
BcaB03g12702 Brassica carinata HOM05D004099 ORTHO05D004777 2.9e-16 89.4 126 57.9
Carub.0007s0905 Capsella rubella HOM05D004099 ORTHO05D004777 2.9e-16 89.4 100 63.0
Aa31LG2G18840 Aethionema arabicum HOM05D004099 ORTHO05D004777 2.4e-15 86.3 137 51.1
AL4G15100 Arabidopsis lyrata HOM05D004099 ORTHO05D004777 4.1e-15 85.5 148 48.0
BraA09t41015Z Brassica rapa HOM05D004099 ORTHO05D004777 7.0e-15 84.7 154 48.1
AT2G24550 Arabidopsis thaliana HOM05D004099 ORTHO05D004777 1.2e-14 84.0 77 67.5
BcaC07g40920 Brassica carinata HOM05D004099 ORTHO05D004777 1.2e-14 84.0 131 49.6
A09p56190 Brassica napus HOM05D004099 ORTHO05D004777 1.2e-14 84.0 154 48.1
Aa31LG7G12320 Aethionema arabicum HOM05D004099 ORTHO05D004777 2.7e-14 82.8 149 49.0
Carub.0004s0391 Capsella rubella HOM05D004099 ORTHO05D004777 2.7e-14 82.8 78 67.9
A04p18910 Brassica napus HOM05D004099 ORTHO05D004777 6.0e-14 81.6 154 46.8
BcaC07g40919 Brassica carinata HOM05D004099 ORTHO05D004777 7.8e-14 81.3 154 47.4
C08p39160 Brassica napus HOM05D004099 ORTHO05D004777 7.8e-14 81.3 154 47.4
BolC8t51489H Brassica oleracea HOM05D004099 ORTHO05D004777 7.8e-14 81.3 154 47.4
CARHR117460 Cardamine hirsuta HOM05D004099 ORTHO05D004777 8.6e-13 77.8 140 50.7
Gohir.A06G105200 Gossypium hirsutum HOM05D004099 ORTHO05D004777 9.5e-12 74.3 116 50.9
Gohir.D06G107300 Gossypium hirsutum HOM05D004099 ORTHO05D004777 9.5e-12 74.3 116 50.9
Gorai.010G122000 Gossypium raimondii HOM05D004099 ORTHO05D004777 9.5e-12 74.3 116 50.9
Gohir.A05G063600 Gossypium hirsutum HOM05D004099 ORTHO05D004777 6.2e-11 71.6 124 49.2
Duzib168G0203 Durio zibethinus HOM05D004099 ORTHO05D004777 8.0e-11 71.2 121 50.4
Sp2g22560 Schrenkiella parvula HOM05D004099 ORTHO05D004777 1.8e-10 70.1 97 57.7
THA.LOC104803870 Tarenaya hassleriana HOM05D004099 ORTHO05D004777 5.2e-10 68.6 128 50.8
BcaB06g27983 Brassica carinata HOM05D004099 ORTHO05D004777 6.8e-10 68.2 155 44.5
BcaC02g08443 Brassica carinata HOM05D004099 ORTHO05D004777 6.8e-10 68.2 155 44.5
C04p54150 Brassica napus HOM05D004099 ORTHO05D004777 6.8e-10 68.2 155 44.5
BolC4t26967H Brassica oleracea HOM05D004099 ORTHO05D004777 6.8e-10 68.2 155 44.5
BraA04t17493Z Brassica rapa HOM05D004099 ORTHO05D004777 6.8e-10 68.2 159 43.4
BcaB06g27984 Brassica carinata HOM05D004099 ORTHO05D004777 1.2e-09 67.4 157 43.9
Thhalv10004845m.g Eutrema salsugineum HOM05D004099 ORTHO05D004777 2.0e-09 66.6 99 56.6
Gohir.D05G066200 Gossypium hirsutum HOM05D004099 ORTHO05D004777 6.4e-08 61.6 117 47.0
Sabra06G0211400 Salix brachista HOM05D004099 ORTHO05D004777 1.1e-07 60.8 158 41.1
Gorai.009G067000 Gossypium raimondii HOM05D004099 ORTHO05D004777 1.4e-07 60.5 90 52.2
THA.LOC104814974 Tarenaya hassleriana HOM05D004099 ORTHO05D004777 1.4e-07 60.5 98 54.1
Medtr3g108910 Medicago truncatula HOM05D004099 ORTHO05D004777 1.9e-07 60.1 100 49.0
Carub.0006s2274 Capsella rubella HOM05D004099 ORTHO05D004777 2.4e-07 59.7 99 52.5
Lj1g0009765 Lotus japonicus HOM05D004099 ORTHO05D004777 4.1e-07 58.9 98 49.0
BcaC03g17940 Brassica carinata HOM05D004099 ORTHO05D004777 7.1e-07 58.2 107 45.8
C02p60010 Brassica napus HOM05D004099 ORTHO05D004777 7.1e-07 58.2 107 45.8
BolC2t12055H Brassica oleracea HOM05D004099 ORTHO05D004777 7.1e-07 58.2 107 45.8
Ca_15654_v3 Cicer arietinum L. HOM05D004099 ORTHO05D004777 7.1e-07 58.2 96 49.0
Ca_15662_v3 Cicer arietinum L. HOM05D004099 ORTHO05D004777 7.1e-07 58.2 96 49.0
BcaNung05898 Brassica carinata HOM05D004099 ORTHO05D004777 1.2e-06 57.4 95 52.6
C09p07050 Brassica napus HOM05D004099 ORTHO05D004777 1.2e-06 57.4 94 52.1
Psat0s1810g0040 Pisum sativum HOM05D004099 ORTHO05D004777 3.5e-06 55.8 96 50.0
AT5G24890 Arabidopsis thaliana HOM05D004099 ORTHO05D004777 4.6e-06 55.5 98 51.0
Manes.16G135100 Manihot esculenta HOM05D004099 ORTHO05D004777 4.6e-06 55.5 82 53.7
arahy.Tifrunner.gnm1.ann1.EP35YN Arachis hypogaea HOM05D004099 ORTHO05D004777 6.0e-06 55.1 94 50.0
AL6G36570 Arabidopsis lyrata HOM05D004099 ORTHO05D004777 7.8e-06 54.7 60 61.7
TPR.G34393 Trifolium pratense HOM05D004099 ORTHO05D004777 7.8e-06 54.7 93 49.5


User provided reference genes

Program Settings