Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung04103 Brassica carinata HOM05D007262 ORTHO05D008524 4.2e-62 241.1 117 100.0
BraA01t01667Z Brassica rapa HOM05D003168 ORTHO05D003590 2.2e-55 218.8 116 91.4
A01p17120 Brassica napus HOM05D003168 ORTHO05D003590 3.2e-54 214.9 116 89.7
C01p21440 Brassica napus HOM05D007262 ORTHO05D008524 1.6e-53 212.6 116 88.8
BolC1t02064H Brassica oleracea HOM05D003168 ORTHO05D003590 1.6e-53 212.6 116 88.8
BcaC09g50739 Brassica carinata HOM05D007262 ORTHO05D008524 1.4e-52 209.5 117 88.0
Thhalv10026951m.g Eutrema salsugineum HOM05D007262 ORTHO05D008524 9.4e-46 186.8 117 77.8
C08p09700 Brassica napus HOM05D007262 ORTHO05D008524 5.2e-44 181.0 116 77.6
AT4G25845 Arabidopsis thaliana HOM05D007262 ORTHO05D008524 2.6e-43 178.7 116 73.3
AL7G27180 Arabidopsis lyrata HOM05D007262 ORTHO05D008524 9.8e-43 176.8 119 73.1
Carub.0007s1510 Capsella rubella HOM05D007262 ORTHO05D008524 6.3e-42 174.1 119 72.3
AT4G25850 Arabidopsis thaliana HOM05D003168 ORTHO05D003590 7.7e-40 167.2 110 71.8
CARHR233310 Cardamine hirsuta HOM05D007262 ORTHO05D008524 1.5e-38 162.9 117 70.1
Aa31LG3G240 Aethionema arabicum HOM05D007262 ORTHO05D008524 5.0e-31 137.9 119 63.0
CARHR271200 Cardamine hirsuta HOM05D007262 ORTHO05D008524 1.8e-28 129.4 117 60.7
AL8G33380 Arabidopsis lyrata HOM05D007262 ORTHO05D008524 9.2e-25 117.1 116 56.9
AT5G57400 Arabidopsis thaliana HOM05D007262 ORTHO05D008524 1.6e-24 116.3 116 56.0
A02p08490 Brassica napus HOM05D007262 ORTHO05D008524 2.3e-23 112.5 114 55.3
BraA02t05922Z Brassica rapa HOM05D007262 ORTHO05D008524 2.3e-23 112.5 114 55.3
BcaB05g22344 Brassica carinata HOM05D007262 ORTHO05D008524 3.0e-23 112.1 114 56.1
THA.LOC104811785 Tarenaya hassleriana HOM05D007262 ORTHO05D008524 8.6e-23 110.5 111 55.9
BcaC03g14155 Brassica carinata HOM05D007262 ORTHO05D008524 3.3e-22 108.6 114 54.4
C02p14260 Brassica napus HOM05D007262 ORTHO05D008524 3.3e-22 108.6 114 54.4
BolC2t07550H Brassica oleracea HOM05D007262 ORTHO05D008524 3.3e-22 108.6 114 54.4
Carub.0008s1792 Capsella rubella HOM05D007262 ORTHO05D008524 1.1e-20 103.6 117 51.3
Sp6g19120 Schrenkiella parvula HOM05D007262 ORTHO05D008524 4.0e-20 101.7 114 50.9
BcaB08g36097 Brassica carinata HOM05D007262 ORTHO05D008524 2.0e-19 99.4 114 51.8
Aa31LG3G13290 Aethionema arabicum HOM05D007262 ORTHO05D008524 4.1e-17 91.7 108 53.7
Thecc.09G176800 Theobroma cacao HOM05D007262 ORTHO05D008524 9.2e-17 90.5 84 53.6
Potri.018G091900 Populus trichocarpa HOM05D007262 ORTHO05D008524 4.6e-16 88.2 84 54.8
BcaC04g19970 Brassica carinata HOM05D007262 ORTHO05D008524 1.3e-15 86.7 114 48.2
C09p49280 Brassica napus HOM05D007262 ORTHO05D008524 1.3e-15 86.7 114 48.2
BolC9t57779H Brassica oleracea HOM05D007262 ORTHO05D008524 1.3e-15 86.7 114 48.2
Atru.chr7.612 Acer truncatum HOM05D007262 ORTHO05D008524 3.0e-15 85.5 97 50.5
COL.COLO4_37717 Corchorus olitorius HOM05D007262 ORTHO05D008524 8.6e-15 84.0 81 53.1
BolC8t48635H Brassica oleracea HOM05D030154 ORTHO05D043166 2.5e-14 82.4 86 60.5
CiPaw.07G192600 Carya illinoinensis HOM05D007262 ORTHO05D008524 3.3e-14 82.0 80 53.8
Sabra06G0129200 Salix brachista HOM05D007262 ORTHO05D008524 3.3e-14 82.0 87 49.4
Gorai.013G246500 Gossypium raimondii HOM05D007262 ORTHO05D008524 7.3e-14 80.9 83 53.0
Gohir.A13G212100 Gossypium hirsutum HOM05D007262 ORTHO05D008524 9.5e-14 80.5 83 53.0
RcHm_v2.0_Chr4g0402361 Rosa chinensis HOM05D007262 ORTHO05D008524 1.6e-13 79.7 82 52.4
CiPaw.08G035900 Carya illinoinensis HOM05D007262 ORTHO05D008524 2.1e-13 79.3 80 57.5
Gohir.D13G216200 Gossypium hirsutum HOM05D007262 ORTHO05D008524 2.1e-13 79.3 83 51.8
MELO3C004021.2 Cucumis melo HOM05D007262 ORTHO05D008524 8.1e-13 77.4 85 49.4
CsaV3_2G008430 Cucumis sativus L. HOM05D007262 ORTHO05D008524 1.4e-12 76.6 99 46.5
Manes.14G154200 Manihot esculenta HOM05D007262 ORTHO05D008524 1.4e-12 76.6 88 50.0
Glyma.17G062800 Glycine max HOM05D007262 ORTHO05D008524 2.3e-12 75.9 78 53.8
Prupe.1G085200 Prunus persica HOM05D007262 ORTHO05D008524 2.3e-12 75.9 82 48.8
A10p14860 Brassica napus HOM05D007262 ORTHO05D008524 4.0e-12 75.1 114 43.0
BraA10t43564Z Brassica rapa HOM05D007262 ORTHO05D008524 4.0e-12 75.1 114 43.0
Sabra18G0079000 Salix brachista HOM05D007262 ORTHO05D008524 4.0e-12 75.1 87 50.6
Potri.006G167300 Populus trichocarpa HOM05D007262 ORTHO05D008524 5.2e-12 74.7 87 44.8
Dinv41243 Davidia involucrata HOM05D007262 ORTHO05D008524 6.8e-12 74.3 88 45.5
Nitab4.5_0007075g0010 Nicotiana tabacum HOM05D007262 ORTHO05D008524 6.8e-12 74.3 62 59.7
Nitab4.5_0012916g0010 Nicotiana tabacum HOM05D007262 ORTHO05D008524 8.9e-12 73.9 59 61.0
ClCG06G013370 Citrullus lanatus HOM05D007262 ORTHO05D008524 1.2e-11 73.6 81 50.6
Haze_22091 Corylus avellana HOM05D007262 ORTHO05D008524 1.2e-11 73.6 88 47.7
Glyma.13G096700 Glycine max HOM05D007262 ORTHO05D008524 1.5e-11 73.2 85 49.4
ClCG11G012130 Citrullus lanatus HOM05D007262 ORTHO05D008524 2.0e-11 72.8 71 54.9
CsaV3_1G031620 Cucumis sativus L. HOM05D007262 ORTHO05D008524 2.6e-11 72.4 63 58.7
CANSAT11G0589 Cannabis sativa HOM05D007262 ORTHO05D008524 3.4e-11 72.0 68 54.4
Lsat_1_v5_gn_7_54640 Lactuca sativa HOM05D007262 ORTHO05D008524 3.4e-11 72.0 71 52.1
MD13G1252900 Malus domestica HOM05D007262 ORTHO05D008524 3.4e-11 72.0 64 56.2
Ciclev10010707m.g Citrus clementina HOM05D007262 ORTHO05D008524 5.8e-11 71.2 88 48.9
Hma1.2p1_1025F.1_g249350 Hydrangea macrophylla HOM05D007262 ORTHO05D008524 5.8e-11 71.2 66 56.1
Sc08g0005310 Simmondsia chinensis HOM05D007262 ORTHO05D008524 5.8e-11 71.2 69 52.2
TWI34G1693 Tripterygium wilfordii HOM05D007262 ORTHO05D008524 5.8e-11 71.2 93 45.2
Hma1.2p1_0900F.1_g234550 Hydrangea macrophylla HOM05D007262 ORTHO05D008524 7.5e-11 70.9 86 46.5
Sed0015293 Sechium edule HOM05D007262 ORTHO05D008524 7.5e-11 70.9 90 46.7
Cfa013501 Carpinus fangiana HOM05D007262 ORTHO05D008524 9.9e-11 70.5 95 43.2
CSS0001479 Camellia sinensis var. sinensis HOM05D007262 ORTHO05D008524 1.3e-10 70.1 58 56.9
Medtr4g127960 Medicago truncatula HOM05D007262 ORTHO05D008524 1.3e-10 70.1 86 47.7
Peaxi162Scf00231g00727 Petunia axillaris HOM05D007262 ORTHO05D008524 1.3e-10 70.1 64 56.2
arahy.Tifrunner.gnm1.ann1.7KD434 Arachis hypogaea HOM05D007262 ORTHO05D008524 1.7e-10 69.7 87 47.1
Lj4g0007156 Lotus japonicus HOM05D007262 ORTHO05D008524 1.7e-10 69.7 89 47.2
MELO3C017460.2 Cucumis melo HOM05D007262 ORTHO05D008524 2.2e-10 69.3 69 55.1
Sed0023592 Sechium edule HOM05D007262 ORTHO05D008524 2.2e-10 69.3 91 51.6
MD16G1257400 Malus domestica HOM05D007262 ORTHO05D008524 2.9e-10 68.9 69 52.2
PGR044G1778 Punica granatum HOM05D007262 ORTHO05D008524 6.4e-10 67.8 82 48.8
Ca_21230_v3 Cicer arietinum L. HOM05D007262 ORTHO05D008524 8.3e-10 67.4 70 51.4
Lsat_1_v5_gn_8_67760 Lactuca sativa HOM05D007262 ORTHO05D008524 8.3e-10 67.4 87 48.3
AUR62033222 Chenopodium quinoa HOM05D007262 ORTHO05D008524 1.1e-09 67.0 114 36.8
Solyc07g018310.4 Solanum lycopersicum HOM05D007262 ORTHO05D008524 1.4e-09 66.6 67 52.2
AUR62021304 Chenopodium quinoa HOM05D007262 ORTHO05D008524 1.9e-09 66.2 123 35.8
ECA236G2076 Erigeron canadensis HOM05D007262 ORTHO05D008524 3.2e-09 65.5 98 37.8
HanXRQChr11g0322411 Helianthus annuus HOM05D007262 ORTHO05D008524 3.2e-09 65.5 91 41.8
Sopen07g007460 Solanum pennellii HOM05D007262 ORTHO05D008524 3.2e-09 65.5 80 46.2
PGSC0003DMG400013783 Solanum tuberosum HOM05D007262 ORTHO05D008524 5.4e-09 64.7 60 56.7
VMungo1215G2644 Vigna mungo HOM05D007262 ORTHO05D008524 1.6e-08 63.2 81 45.7
Phvul.003G145250 Phaseolus vulgaris HOM05D007262 ORTHO05D008524 2.1e-08 62.8 84 46.4
TAR383G0997 Trochodendron aralioides HOM05D007262 ORTHO05D008524 1.0e-07 60.5 83 44.6
EL10Ac8g18288 Beta vulgaris HOM05D023972 ORTHO05D008524 2.3e-07 59.3 71 42.3
Lalb_Chr07g0180511 Lupinus albus HOM05D007262 ORTHO05D008524 2.3e-07 59.3 75 46.7
Nitab4.5_0007075g0020 Nicotiana tabacum HOM05D007262 ORTHO05D008524 3.9e-07 58.5 80 41.2
Oeu042172.1 Olea europaea HOM05D007262 ORTHO05D008524 6.6e-07 57.8 88 39.8
Ah.14g083780 Amaranthus hybridus HOM05D007262 ORTHO05D008524 8.6e-07 57.4 74 40.5
Nn8g40468 Nelumbo nucifera HOM05D007262 ORTHO05D008524 1.1e-06 57.0 83 41.0
Rhsim01G0003900 Rhododendron simsii HOM05D000138 ORTHO05D000078 1.1e-06 57.0 79 41.8
DCAR_009916 Daucus carota HOM05D007262 ORTHO05D008524 7.3e-06 54.3 95 40.0


User provided reference genes

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