Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung04081 Brassica carinata HOM05D004051 ORTHO05D004480 4.0e-37 157.5 76 100.0
BcaNung01095 Brassica carinata HOM05D004051 ORTHO05D004480 2.7e-33 144.8 76 94.7
BcaC09g50935 Brassica carinata HOM05D004051 ORTHO05D004480 1.5e-31 139.0 77 92.2
Sp7g21840 Schrenkiella parvula HOM05D004051 ORTHO05D004480 1.5e-31 139.0 76 90.8
BcaNung04241 Brassica carinata HOM05D004051 ORTHO05D004480 4.3e-31 137.5 76 89.5
Thhalv10026982m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 5.6e-31 137.1 76 89.5
A03p54820 Brassica napus HOM05D004051 ORTHO05D004480 6.8e-29 130.2 70 87.1
BraA03t14549Z Brassica rapa HOM05D004051 ORTHO05D004480 1.5e-28 129.0 70 85.7
C01p19120 Brassica napus HOM05D004051 ORTHO05D004480 2.0e-28 128.6 74 89.2
BolC1t01838H Brassica oleracea HOM05D004051 ORTHO05D004480 5.8e-28 127.1 72 90.3
C07p53180 Brassica napus HOM05D004051 ORTHO05D004480 7.5e-28 126.7 75 82.7
CARHR231280 Cardamine hirsuta HOM05D004051 ORTHO05D004480 9.8e-28 126.3 77 81.8
A01p15190 Brassica napus HOM05D004051 ORTHO05D004480 8.3e-27 123.2 75 88.0
BraA01t01457Z Brassica rapa HOM05D004051 ORTHO05D004480 8.3e-27 123.2 75 88.0
AL7G29460 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 4.1e-26 120.9 78 80.8
AT4G23885 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 1.0e-24 116.3 79 79.7
Aa31LG6G7140 Aethionema arabicum HOM05D004051 ORTHO05D004480 1.9e-23 112.1 75 74.7
Carub.0007s1723 Capsella rubella HOM05D004051 ORTHO05D004480 1.2e-22 109.4 76 71.1
THA.LOC104815090 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 4.0e-21 104.4 85 64.7
Duzib205G1876 Durio zibethinus HOM05D004051 ORTHO05D004480 9.2e-18 93.2 80 60.0
Manes.02G009700 Manihot esculenta HOM05D004051 ORTHO05D004480 1.2e-17 92.8 80 61.2
Gohir.D12G237933 Gossypium hirsutum HOM05D004051 ORTHO05D004480 2.1e-17 92.0 80 60.0
Gorai.008G254600 Gossypium raimondii HOM05D004051 ORTHO05D004480 2.1e-17 92.0 80 60.0
Gohir.A12G236600 Gossypium hirsutum HOM05D004051 ORTHO05D004480 6.0e-17 90.5 80 58.8
Glyma.01G225400 Glycine max HOM05D004051 ORTHO05D004480 1.7e-16 89.0 81 55.6
Psat7g025560 Pisum sativum HOM05D004051 ORTHO05D004480 3.9e-16 87.8 80 56.2
Thecc.03G298400 Theobroma cacao HOM05D004051 ORTHO05D004480 3.9e-16 87.8 80 56.2
Potri.003G140300 Populus trichocarpa HOM05D004051 ORTHO05D004480 1.1e-15 86.3 81 58.0
Sed0004965 Sechium edule HOM05D004051 ORTHO05D004480 2.5e-15 85.1 80 57.5
Prupe.5G120400 Prunus persica HOM05D004051 ORTHO05D004480 5.6e-15 84.0 83 56.6
CSS0008906 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 7.3e-15 83.6 81 55.6
HanXRQChr03g0083481 Helianthus annuus HOM05D004051 ORTHO05D004480 7.3e-15 83.6 81 54.3
QL02p030350 Quercus lobata HOM05D004051 ORTHO05D004480 1.2e-14 82.8 79 53.2
Gohir.D12G237800 Gossypium hirsutum HOM05D004051 ORTHO05D004480 2.8e-14 81.6 75 57.3
TWI81G0780 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 2.8e-14 81.6 80 56.2
COL.COLO4_10706 Corchorus olitorius HOM05D004051 ORTHO05D004480 3.6e-14 81.3 76 56.6
Glyma.11G017600 Glycine max HOM05D004051 ORTHO05D004480 3.6e-14 81.3 78 55.1
Lalb_Chr05g0224141 Lupinus albus HOM05D004051 ORTHO05D004480 3.6e-14 81.3 77 54.5
arahy.Tifrunner.gnm1.ann1.T1KBZJ Arachis hypogaea HOM05D004051 ORTHO05D004480 4.7e-14 80.9 77 57.1
TWI15G0384 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 4.7e-14 80.9 80 56.2
Oeu054023.1 Olea europaea HOM05D004051 ORTHO05D004480 8.1e-14 80.1 75 57.3
CiPaw.05G255100 Carya illinoinensis HOM05D004051 ORTHO05D004480 1.1e-13 79.7 79 55.7
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 1.1e-13 79.7 76 53.9
ECA240G0536 Erigeron canadensis HOM05D004051 ORTHO05D004480 1.1e-13 79.7 78 51.3
unitig_88.g27640 Utricularia gibba HOM05D004051 ORTHO05D004480 1.1e-13 79.7 78 51.3
Actinidia22162 Actinidia chinensis HOM05D004051 ORTHO05D004480 1.4e-13 79.3 75 58.7
CDE09G0659 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 1.4e-13 79.3 83 51.8
TAR629G1304 Trochodendron aralioides HOM05D004051 ORTHO05D004480 1.4e-13 79.3 79 54.4
Dinv29295 Davidia involucrata HOM05D004051 ORTHO05D004480 1.8e-13 79.0 83 53.0
Dinv37531 Davidia involucrata HOM05D004051 ORTHO05D004480 1.8e-13 79.0 75 54.7
Nn1g01872 Nelumbo nucifera HOM05D004051 ORTHO05D004480 2.4e-13 78.6 80 55.0
Phvul.002G298100 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 2.4e-13 78.6 82 51.2
Actinidia04200 Actinidia chinensis HOM05D004051 ORTHO05D004480 4.0e-13 77.8 81 53.1
arahy.Tifrunner.gnm1.ann1.E0UY0G Arachis hypogaea HOM05D004051 ORTHO05D004480 4.0e-13 77.8 77 55.8
CiPaw.05G252200 Carya illinoinensis HOM05D004051 ORTHO05D004480 4.0e-13 77.8 79 54.4
DCAR_006488 Daucus carota HOM05D004051 ORTHO05D004480 4.0e-13 77.8 75 56.0
CiPaw.05G255500 Carya illinoinensis HOM05D004051 ORTHO05D004480 5.2e-13 77.4 79 54.4
CDE02G2345 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 5.2e-13 77.4 77 54.5
Hma1.2p1_1461F.1_g285050 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 5.2e-13 77.4 77 54.5
Hma1.2p1_2808F.1_g328863 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 5.2e-13 77.4 77 54.5
MD06G1107300 Malus domestica HOM05D004051 ORTHO05D004480 5.2e-13 77.4 79 53.2
TPR.G25572 Trifolium pratense HOM05D004051 ORTHO05D004480 5.2e-13 77.4 75 54.7
FvH4_5g04640 Fragaria vesca HOM05D004051 ORTHO05D004480 6.8e-13 77.0 73 56.2
FAN18G0508 Fragaria x ananassa HOM05D004051 ORTHO05D004480 6.8e-13 77.0 73 56.2
HanXRQChr13g0415281 Helianthus annuus HOM05D004051 ORTHO05D004480 6.8e-13 77.0 76 51.3
RcHm_v2.0_Chr7g0194731 Rosa chinensis HOM05D004051 ORTHO05D004480 6.8e-13 77.0 73 56.2
EL10Ac5g12918 Beta vulgaris HOM05D004051 ORTHO05D004480 8.9e-13 76.6 75 56.0
FAN08G0063 Fragaria x ananassa HOM05D004051 ORTHO05D004480 8.9e-13 76.6 73 56.2
Hund04853 Selenicereus undatus HOM05D004051 ORTHO05D004480 8.9e-13 76.6 82 54.9
CiPaw.11G121000 Carya illinoinensis HOM05D004051 ORTHO05D004480 1.2e-12 76.3 75 54.7
LjContig00312_ERROPOS870357g0027890 Lotus japonicus HOM05D004051 ORTHO05D004480 1.2e-12 76.3 80 53.8
Sc13g0009750 Simmondsia chinensis HOM05D004051 ORTHO05D004480 1.2e-12 76.3 78 51.3
Medtr8g099465 Medicago truncatula HOM05D004051 ORTHO05D004480 1.5e-12 75.9 70 52.9
Sopen08g030650 Solanum pennellii HOM05D004051 ORTHO05D004480 1.5e-12 75.9 78 51.3
CSS0023187 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 2.0e-12 75.5 75 54.7
AUR62019374 Chenopodium quinoa HOM05D004051 ORTHO05D004480 2.0e-12 75.5 83 53.0
Solyc08g082390.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 2.0e-12 75.5 78 50.0
Ciclev10023430m.g Citrus clementina HOM05D004051 ORTHO05D004480 2.6e-12 75.1 71 59.2
Dinv38829 Davidia involucrata HOM05D004051 ORTHO05D004480 2.6e-12 75.1 75 53.3
Oeu063517.1 Olea europaea HOM05D004051 ORTHO05D004480 2.6e-12 75.1 82 51.2
Lj4g0013283 Lotus japonicus HOM05D004051 ORTHO05D004480 3.4e-12 74.7 75 52.0
Atru.chr9.1978 Acer truncatum HOM05D004051 ORTHO05D004480 4.4e-12 74.3 74 55.4
Atru.chr9.1993 Acer truncatum HOM05D004051 ORTHO05D004480 4.4e-12 74.3 74 55.4
Migut.A00641 Erythranthe guttata HOM05D004051 ORTHO05D004480 4.4e-12 74.3 81 54.3
GSVIVG01019535001 Vitis vinifera HOM05D004051 ORTHO05D004480 7.6e-12 73.6 85 48.2
Ah.07g197450 Amaranthus hybridus HOM05D004051 ORTHO05D004480 9.9e-12 73.2 76 55.3
CANSAT21G2574 Cannabis sativa HOM05D004051 ORTHO05D004480 9.9e-12 73.2 74 52.7
Cc08_g16090 Coffea canephora HOM05D004051 ORTHO05D004480 9.9e-12 73.2 76 53.9
PGR042G1109 Punica granatum HOM05D004051 ORTHO05D004480 9.9e-12 73.2 71 54.9
Sed0007169 Sechium edule HOM05D004051 ORTHO05D004480 9.9e-12 73.2 84 52.4
FvH4_7g31780 Fragaria vesca HOM05D004051 ORTHO05D004480 1.3e-11 72.8 76 51.3
FAN01G1391 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.3e-11 72.8 76 51.3
Rhsim09G0205000 Rhododendron simsii HOM05D004051 ORTHO05D004480 1.3e-11 72.8 79 51.9
Solyc08g008330.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 1.3e-11 72.8 83 48.2
Sopen08g004210 Solanum pennellii HOM05D004051 ORTHO05D004480 1.3e-11 72.8 83 48.2
Atru.chr1.148 Acer truncatum HOM05D004051 ORTHO05D004480 1.7e-11 72.4 79 51.9
FAN10G0142 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.7e-11 72.4 76 51.3
Phvul.002G164300 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 1.7e-11 72.4 77 49.4
Gohir.D08G104000 Gossypium hirsutum HOM05D004051 ORTHO05D004480 2.9e-11 71.6 91 48.4
Manes.06G159300 Manihot esculenta HOM05D004051 ORTHO05D004480 3.8e-11 71.2 75 52.0
Gorai.004G111400 Gossypium raimondii HOM05D004051 ORTHO05D004480 4.9e-11 70.9 91 47.3
Nn3g19011 Nelumbo nucifera HOM05D004051 ORTHO05D004480 4.9e-11 70.9 74 52.7
PSO063G6907 Papaver somniferum HOM05D004051 ORTHO05D004480 4.9e-11 70.9 71 57.7
RcHm_v2.0_Chr1g0381011 Rosa chinensis HOM05D004051 ORTHO05D004480 4.9e-11 70.9 76 50.0
BcaNung01214 Brassica carinata HOM05D004051 ORTHO05D004480 6.4e-11 70.5 83 51.8
CARHR189350 Cardamine hirsuta HOM05D004051 ORTHO05D004480 6.4e-11 70.5 81 53.1
Thecc.03G195700 Theobroma cacao HOM05D004051 ORTHO05D004480 6.4e-11 70.5 89 48.3
Actinidia03163 Actinidia chinensis HOM05D004051 ORTHO05D004480 8.4e-11 70.1 81 49.4
QL09p009613 Quercus lobata HOM05D004051 ORTHO05D004480 1.1e-10 69.7 77 50.6
vmacro11468 Vaccinium macrocarpon HOM05D004051 ORTHO05D004480 1.1e-10 69.7 76 46.1
MD06G1107200 Malus domestica HOM05D004051 ORTHO05D004480 1.4e-10 69.3 74 48.6
GSVIVG01038715001 Vitis vinifera HOM05D004051 ORTHO05D004480 1.4e-10 69.3 71 54.9
AL6G35560 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 1.9e-10 68.9 79 54.4
AT5G24165 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 1.9e-10 68.9 81 51.9
arahy.Tifrunner.gnm1.ann1.ZDLG37 Arachis hypogaea HOM05D004051 ORTHO05D004480 1.9e-10 68.9 75 52.0
BcaNung01808 Brassica carinata HOM05D004051 ORTHO05D004480 1.9e-10 68.9 87 49.4
Carub.0006s2191 Capsella rubella HOM05D004051 ORTHO05D004480 1.9e-10 68.9 81 53.1
Gohir.A08G096024 Gossypium hirsutum HOM05D004051 ORTHO05D004480 1.9e-10 68.9 91 46.2
Sp2g23150 Schrenkiella parvula HOM05D004051 ORTHO05D004480 1.9e-10 68.9 84 51.2
MD01G1219400 Malus domestica HOM05D004051 ORTHO05D004480 2.4e-10 68.6 74 52.7
BcaB07g29898 Brassica carinata HOM05D004051 ORTHO05D004480 3.2e-10 68.2 87 49.4
Potri.012G011600 Populus trichocarpa HOM05D004051 ORTHO05D004480 3.2e-10 68.2 80 47.5
Sc01g0010310 Simmondsia chinensis HOM05D004051 ORTHO05D004480 3.2e-10 68.2 84 48.8
SGA_v2.0_scaffold96G29014 Striga asiatica HOM05D004051 ORTHO05D004480 3.2e-10 68.2 80 47.5
DCAR_010606 Daucus carota HOM05D004051 ORTHO05D004480 4.1e-10 67.8 73 53.4
Eucgr.E00869 Eucalyptus grandis HOM05D004051 ORTHO05D004480 4.1e-10 67.8 71 54.9
Thhalv10005218m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 4.1e-10 67.8 87 49.4
FAN10G1914 Fragaria x ananassa HOM05D004051 ORTHO05D004480 4.1e-10 67.8 88 44.3
Peaxi162Scf00102g01842 Petunia axillaris HOM05D004051 ORTHO05D004480 5.4e-10 67.4 79 45.6
A02p40750 Brassica napus HOM05D004051 ORTHO05D004480 7.1e-10 67.0 87 47.1
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 7.1e-10 67.0 76 48.7
ClCG01G001670 Citrullus lanatus HOM05D004051 ORTHO05D004480 9.2e-10 66.6 85 45.9
FAN13G0943 Fragaria x ananassa HOM05D004051 ORTHO05D004480 9.2e-10 66.6 70 51.4
PGR042G3499 Punica granatum HOM05D004051 ORTHO05D004480 1.2e-09 66.2 79 44.3
PGSC0003DMG400012279 Solanum tuberosum HOM05D004051 ORTHO05D004480 1.2e-09 66.2 78 47.4
Sed0015186 Sechium edule HOM05D004051 ORTHO05D004480 1.6e-09 65.9 69 56.5
ClCG01G000480 Citrullus lanatus HOM05D004051 ORTHO05D004480 2.1e-09 65.5 79 49.4
FAN18G2387 Fragaria x ananassa HOM05D004051 ORTHO05D004480 2.7e-09 65.1 67 52.2
MELO3C005880.2 Cucumis melo HOM05D004051 ORTHO05D004480 3.5e-09 64.7 78 50.0
AUR62010843 Chenopodium quinoa HOM05D004051 ORTHO05D004480 7.8e-09 63.5 70 50.0
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 7.8e-09 63.5 91 44.0
Sabra03G0101300 Salix brachista HOM05D004051 ORTHO05D004480 7.8e-09 63.5 86 44.2
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 1.3e-08 62.8 72 50.0
SalBow1G7115 Salvia bowleyana HOM05D004051 ORTHO05D004480 1.7e-08 62.4 80 46.2
PGSC0003DMG400005791 Solanum tuberosum HOM05D004051 ORTHO05D004480 1.7e-08 62.4 84 44.0
HPP92_020160 Vanilla planifolia HOM05D004051 ORTHO05D004480 1.7e-08 62.4 98 40.8
Haze_09066 Corylus avellana HOM05D004051 ORTHO05D004480 2.3e-08 62.0 62 54.8
Ciclev10006352m.g Citrus clementina HOM05D004051 ORTHO05D004480 3.0e-08 61.6 74 47.3
FAN03G1224 Fragaria x ananassa HOM05D004051 ORTHO05D004480 3.0e-08 61.6 71 46.5
SalBow1G2120 Salvia bowleyana HOM05D004051 ORTHO05D004480 3.0e-08 61.6 80 46.2
Hund14219 Selenicereus undatus HOM05D004051 ORTHO05D004480 3.0e-08 61.6 71 52.1
Aa31LG11G3430 Aethionema arabicum HOM05D004051 ORTHO05D004480 5.1e-08 60.8 78 44.9
THA.LOC104821369 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 6.6e-08 60.5 84 42.9
Hund11389 Selenicereus undatus HOM05D004051 ORTHO05D004480 2.5e-07 58.5 71 52.1
AUR62006115 Chenopodium quinoa HOM05D004051 ORTHO05D004480 5.6e-07 57.4 28 92.9
MBI06_g08462_MAGBIO Magnolia biondii HOM05D004051 ORTHO05D004480 5.6e-07 57.4 80 45.0
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 7.3e-07 57.0 71 49.3
AagrBONN_evm.TU.Sc2ySwM_369.239 Anthoceros agrestis HOM05D004051 ORTHO05D004480 7.3e-07 57.0 74 47.3
A06p35000 Brassica napus HOM05D004051 ORTHO05D004480 7.3e-07 57.0 82 45.1
C07p43550 Brassica napus HOM05D004051 ORTHO05D004480 7.3e-07 57.0 82 45.1
BraA06t26423Z Brassica rapa HOM05D004051 ORTHO05D004480 7.3e-07 57.0 82 45.1
EL10Ac3g05304 Beta vulgaris HOM05D004051 ORTHO05D004480 1.2e-06 56.2 78 44.9
HPP92_020177 Vanilla planifolia HOM05D004051 ORTHO05D004480 1.6e-06 55.8 95 38.9
BolC7t44882H Brassica oleracea HOM05D004051 ORTHO05D004480 2.1e-06 55.5 82 43.9
Lj2A167G43 Lonicera japonica HOM05D004051 ORTHO05D004480 3.6e-06 54.7 60 51.7


User provided reference genes

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