Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung04080 Brassica carinata HOM05D006578 ORTHO05D008100 6.1e-135 484.2 250 100.0
Carub.0007s1722 Capsella rubella HOM05D006578 ORTHO05D008100 4.4e-117 424.9 250 88.0
AL7G29450 Arabidopsis lyrata HOM05D006578 ORTHO05D008100 1.6e-114 416.4 252 87.3
AT4G23890 Arabidopsis thaliana HOM05D006578 ORTHO05D008100 2.7e-114 415.6 252 86.5
Sp7g21850 Schrenkiella parvula HOM05D006578 ORTHO05D008100 2.3e-113 412.5 245 87.8
BraA01t01458Z Brassica rapa HOM05D006578 ORTHO05D008100 1.1e-112 410.2 246 85.4
CARHR231290 Cardamine hirsuta HOM05D006578 ORTHO05D008100 1.9e-112 409.5 250 83.6
A01p15200 Brassica napus HOM05D006578 ORTHO05D008100 7.3e-112 407.5 245 86.5
BolC1t01839H Brassica oleracea HOM05D006578 ORTHO05D008100 1.2e-111 406.8 246 87.0
BcaNung01096 Brassica carinata HOM05D006578 ORTHO05D008100 1.6e-111 406.4 245 86.9
BraA03t14550Z Brassica rapa HOM05D006578 ORTHO05D008100 2.8e-111 405.6 251 86.5
C01p19130 Brassica napus HOM05D006578 ORTHO05D008100 5.2e-110 401.4 246 86.2
A03p54830 Brassica napus HOM05D006578 ORTHO05D008100 1.2e-109 400.2 250 84.4
Thhalv10027518m.g Eutrema salsugineum HOM05D006578 ORTHO05D008100 3.4e-109 398.7 253 83.4
Aa31LG6G7150 Aethionema arabicum HOM05D006578 ORTHO05D008100 6.0e-98 361.3 251 74.9
THA.LOC104815081 Tarenaya hassleriana HOM05D006578 ORTHO05D008100 4.0e-94 348.6 250 74.0
BcaC09g50934 Brassica carinata HOM05D006578 ORTHO05D008100 9.2e-91 337.4 197 89.3
Cpa.g.sc79.32 Carica papaya HOM05D006578 ORTHO05D008100 8.4e-76 287.7 241 63.5
COL.COLO4_10707 Corchorus olitorius HOM05D006578 ORTHO05D008100 4.3e-72 275.4 241 61.4
Thecc.03G298500 Theobroma cacao HOM05D006578 ORTHO05D008100 7.4e-72 274.6 241 60.6
TWI60G1670 Tripterygium wilfordii HOM05D006578 ORTHO05D008100 1.3e-71 273.9 244 60.2
FAN18G3822 Fragaria x ananassa HOM05D006578 ORTHO05D008100 3.6e-71 272.3 244 57.4
FAN13G1942 Fragaria x ananassa HOM05D006578 ORTHO05D008100 4.8e-71 271.9 244 59.8
Ah.07g197460 Amaranthus hybridus HOM05D006578 ORTHO05D008100 1.1e-70 270.8 252 56.3
Duzib068G0825 Durio zibethinus HOM05D006578 ORTHO05D008100 1.4e-70 270.4 241 60.2
FAN04G1820 Fragaria x ananassa HOM05D006578 ORTHO05D008100 1.4e-70 270.4 244 59.8
Atru.chr9.1977 Acer truncatum HOM05D006578 ORTHO05D008100 4.0e-70 268.9 243 56.0
Atru.chr9.1992 Acer truncatum HOM05D006578 ORTHO05D008100 4.0e-70 268.9 243 56.0
FAN08G0426 Fragaria x ananassa HOM05D006578 ORTHO05D008100 4.0e-70 268.9 244 59.4
FAN18G0518 Fragaria x ananassa HOM05D006578 ORTHO05D008100 4.0e-70 268.9 244 57.0
FvH4_5g04650 Fragaria vesca HOM05D006578 ORTHO05D008100 6.9e-70 268.1 244 56.6
Ciclev10024562m.g Citrus clementina HOM05D006578 ORTHO05D008100 9.0e-70 267.7 240 58.8
Prupe.5G120500 Prunus persica HOM05D006578 ORTHO05D008100 1.2e-69 267.3 246 57.3
Gohir.A05G346600 Gossypium hirsutum HOM05D006578 ORTHO05D008100 1.5e-69 266.9 243 59.3
Ca_18845_v3 Cicer arietinum L. HOM05D006578 ORTHO05D008100 3.8e-68 262.3 247 57.1
CiPaw.11G120900 Carya illinoinensis HOM05D006578 ORTHO05D008100 1.1e-67 260.8 243 57.2
Lj3g0025915 Lotus japonicus HOM05D006578 ORTHO05D008100 1.4e-67 260.4 230 60.0
PGR042G0620 Punica granatum HOM05D006578 ORTHO05D008100 2.4e-67 259.6 238 60.1
Cfa012002 Carpinus fangiana HOM05D006578 ORTHO05D008100 3.2e-67 259.2 246 55.7
Medtr8g032260 Medicago truncatula HOM05D006578 ORTHO05D008100 5.5e-67 258.5 247 57.1
EL10Ac5g12919 Beta vulgaris HOM05D006578 ORTHO05D008100 9.3e-67 257.7 251 56.2
ClCG07G011600 Citrullus lanatus HOM05D006578 ORTHO05D008100 1.2e-66 257.3 238 59.7
MELO3C016296.2 Cucumis melo HOM05D006578 ORTHO05D008100 4.6e-66 255.4 244 57.4
Sabra01G0067600 Salix brachista HOM05D006578 ORTHO05D008100 4.6e-66 255.4 240 57.1
TAR633G0540 Trochodendron aralioides HOM05D006578 ORTHO05D008100 6.0e-66 255.0 239 55.2
CsaV3_4G006610 Cucumis sativus L. HOM05D006578 ORTHO05D008100 1.0e-65 254.2 243 56.8
AUR62010844 Chenopodium quinoa HOM05D006578 ORTHO05D008100 1.9e-64 250.0 251 54.2
QL02p030348 Quercus lobata HOM05D006578 ORTHO05D008100 2.5e-64 249.6 185 69.2
MSTRG.11922 Avicennia marina HOM05D006578 ORTHO05D008100 4.3e-64 248.8 225 57.3
Glyma.07G075100 Glycine max HOM05D006578 ORTHO05D008100 4.3e-64 248.8 247 55.5
Potri.001G091300 Populus trichocarpa HOM05D006578 ORTHO05D008100 7.4e-64 248.1 233 57.1
Dinv37530 Davidia involucrata HOM05D006578 ORTHO05D008100 9.6e-64 247.7 229 58.5
Solyc08g082400.1 Solanum lycopersicum HOM05D006578 ORTHO05D008100 9.6e-64 247.7 229 59.8
Oeu009960.1 Olea europaea HOM05D006578 ORTHO05D008100 1.3e-63 247.3 244 53.3
Phvul.010G094000 Phaseolus vulgaris HOM05D006578 ORTHO05D008100 2.8e-63 246.1 248 53.6
Potri.003G140400 Populus trichocarpa HOM05D006578 ORTHO05D008100 2.8e-63 246.1 237 55.3
Sopen08g030660 Solanum pennellii HOM05D006578 ORTHO05D008100 3.7e-63 245.7 228 57.0
Manes.02G009600 Manihot esculenta HOM05D006578 ORTHO05D008100 8.1e-63 244.6 240 55.0
PGSC0003DMG400044958 Solanum tuberosum HOM05D006578 ORTHO05D008100 1.4e-62 243.8 228 56.6
Nitab4.5_0001210g0110 Nicotiana tabacum HOM05D006578 ORTHO05D008100 1.8e-62 243.4 245 54.3
BcaNung04242 Brassica carinata HOM05D006578 ORTHO05D008100 3.1e-62 242.7 170 82.4
C07p53190 Brassica napus HOM05D006578 ORTHO05D008100 3.1e-62 242.7 170 82.9
BolC7t45814H Brassica oleracea HOM05D006578 ORTHO05D008100 3.1e-62 242.7 170 82.4
CSS0036002 Camellia sinensis var. sinensis HOM05D006578 ORTHO05D008100 4.0e-62 242.3 247 55.9
Hma1.2p1_0359F.1_g135230 Hydrangea macrophylla HOM05D006578 ORTHO05D008100 4.0e-62 242.3 244 54.1
Sed0010985 Sechium edule HOM05D006578 ORTHO05D008100 4.0e-62 242.3 237 55.3
Cc08_g16100 Coffea canephora HOM05D006578 ORTHO05D008100 1.5e-61 240.4 247 54.7
Lsat_1_v5_gn_3_10861 Lactuca sativa HOM05D006578 ORTHO05D008100 1.5e-61 240.4 242 57.4
Haze_09067 Corylus avellana HOM05D006578 ORTHO05D008100 2.6e-61 239.6 188 64.4
VMungo0331G0206 Vigna mungo HOM05D005332 ORTHO05D006861 7.6e-61 238.0 244 52.9
Migut.A00640 Erythranthe guttata HOM05D006578 ORTHO05D008100 2.9e-60 236.1 237 56.1
Peaxi162Scf00074g00082 Petunia axillaris HOM05D006578 ORTHO05D008100 2.9e-60 236.1 222 59.5
Actinidia27316 Actinidia chinensis HOM05D006578 ORTHO05D008100 3.8e-60 235.7 180 66.7
Nitab4.5_0006775g0020 Nicotiana tabacum HOM05D006578 ORTHO05D008100 6.5e-60 235.0 234 54.3
ATR0796G340 Amborella trichopoda HOM05D006578 ORTHO05D008100 8.4e-60 234.6 241 53.1
CAN.G1804.8 Capsicum annuum HOM05D006578 ORTHO05D008100 8.4e-60 234.6 250 52.4
HanXRQChr17g0534801 Helianthus annuus HOM05D006578 ORTHO05D008100 1.1e-59 234.2 242 58.7
Lalb_Chr04g0256691 Lupinus albus HOM05D006578 ORTHO05D008100 1.4e-59 233.8 236 56.8
Gorai.012G073800 Gossypium raimondii HOM05D006578 ORTHO05D008100 5.5e-59 231.9 244 53.3
Gohir.D04G065600 Gossypium hirsutum HOM05D006578 ORTHO05D008100 1.2e-58 230.7 244 53.3
unitig_32.g10973 Utricularia gibba HOM05D006578 ORTHO05D008100 2.7e-58 229.6 229 52.4
DCAR_029888 Daucus carota HOM05D006578 ORTHO05D008100 1.9e-56 223.4 207 56.5
PSO761G0627 Papaver somniferum HOM05D006578 ORTHO05D008100 2.8e-55 219.5 267 47.9
Lj2P167T19 Lonicera japonica HOM05D006578 ORTHO05D008100 1.4e-54 217.2 183 62.3
ECA246G0449 Erigeron canadensis HOM05D001832 ORTHO05D001861 1.8e-54 216.9 228 54.4
PSO210G4984 Papaver somniferum HOM05D006578 ORTHO05D008100 4.1e-54 215.7 267 48.3
SEGI_09764 Sequoiadendron giganteum HOM05D006578 ORTHO05D008100 7.6e-53 211.5 205 52.2
SEGI_13573 Sequoiadendron giganteum HOM05D006578 ORTHO05D008100 7.6e-53 211.5 205 52.2
Aqoxy2G01516 Aquilegia oxysepala HOM05D006578 ORTHO05D008100 3.8e-52 209.1 245 51.4
FAN13G3291 Fragaria x ananassa HOM05D006578 ORTHO05D008100 3.8e-52 209.1 244 51.6
AUR62019843 Chenopodium quinoa HOM05D006578 ORTHO05D008100 1.1e-51 207.6 251 48.6
Psat4g152960 Pisum sativum HOM05D006578 ORTHO05D008100 5.5e-51 205.3 241 47.3
Hma1.2p1_0359F.1_g135240 Hydrangea macrophylla HOM05D006578 ORTHO05D008100 1.1e-48 197.6 136 70.6
Zm00001eb224490 Zea mays HOM05D006578 ORTHO05D008100 7.4e-48 194.9 211 49.3
Os07g0196200 Oryza sativa ssp. japonica HOM05D006578 ORTHO05D008100 1.1e-46 191.0 217 49.3
Sabra03G0101400 Salix brachista HOM05D006578 ORTHO05D008100 3.1e-46 189.5 239 46.9
GSVIVG01019536001 Vitis vinifera HOM05D006578 ORTHO05D008100 5.1e-41 172.2 243 45.3
Mapoly0067s0043 Marchantia polymorpha HOM05D006578 ORTHO05D008100 6.9e-38 161.8 204 45.1
Pp3c11_19730 Physcomitrium patens HOM05D006578 ORTHO05D008100 6.9e-38 161.8 189 43.9
CBR_g28643 Chara braunii HOM05D006578 ORTHO05D008100 8.5e-36 154.8 186 45.7
AagrBONN_evm.TU.Sc2ySwM_117.36 Anthoceros agrestis HOM05D006578 ORTHO05D008100 9.4e-35 151.4 188 42.6
SMO146G0113 Selaginella moellendorffii HOM05D006578 ORTHO05D008100 8.2e-31 138.3 204 41.2
CiPaw.12G082500 Carya illinoinensis HOM05D006578 ORTHO05D008100 1.5e-24 117.5 209 36.8
TWI81G0713 Tripterygium wilfordii HOM05D006578 ORTHO05D008100 3.3e-24 116.3 135 48.9
SalBow1G4365 Salvia bowleyana HOM05D006578 ORTHO05D008100 5.7e-24 115.5 190 41.6
SalBow1G5827 Salvia bowleyana HOM05D006578 ORTHO05D008100 5.7e-24 115.5 190 41.6
Medtr7g076620 Medicago truncatula HOM05D006578 ORTHO05D008100 1.7e-23 114.0 133 48.1
TPR.G17579 Trifolium pratense HOM05D006578 ORTHO05D008100 2.2e-23 113.6 132 47.7
Ca_07882_v3 Cicer arietinum L. HOM05D006578 ORTHO05D008100 2.4e-22 110.2 120 50.0
Glyma.09G263100 Glycine max HOM05D006578 ORTHO05D008100 1.6e-21 107.5 143 48.3
arahy.Tifrunner.gnm1.ann1.6WXN94 Arachis hypogaea HOM05D006578 ORTHO05D008100 3.5e-21 106.3 131 47.3
VMungo1383G2377 Vigna mungo HOM05D006578 ORTHO05D008100 5.9e-21 105.5 139 48.2
Psat3g111760 Pisum sativum HOM05D006578 ORTHO05D008100 1.3e-20 104.4 142 46.5
arahy.Tifrunner.gnm1.ann1.UYM9MT Arachis hypogaea HOM05D006578 ORTHO05D008100 3.8e-20 102.8 132 47.0
Phvul.008G068900 Phaseolus vulgaris HOM05D006578 ORTHO05D008100 9.4e-19 98.2 140 46.4
Glyma.18G229100 Glycine max HOM05D006578 ORTHO05D008100 6.1e-18 95.5 148 45.3
Lj1g0003243 Lotus japonicus HOM05D006578 ORTHO05D008100 6.1e-18 95.5 139 42.4
SGA_v2.0_scaffold96G29015 Striga asiatica HOM05D003962 ORTHO05D004714 2.6e-16 90.1 148 41.9
Nn4g25270 Nelumbo nucifera HOM05D006578 ORTHO05D008100 4.4e-16 89.4 118 45.8
Sabra15G0075700 Salix brachista HOM05D000345 ORTHO05D000215 9.8e-16 88.2 102 52.0
Sc07g0010050 Simmondsia chinensis HOM05D006578 ORTHO05D008100 1.7e-15 87.4 153 35.9
HPP92_001215 Vanilla planifolia HOM05D006578 ORTHO05D008100 3.5e-13 79.7 87 54.0
Glyma.03G015000 Glycine max HOM05D006578 ORTHO05D008100 8.6e-12 75.1 126 37.3
Oeu054024.1 Olea europaea HOM05D006578 ORTHO05D008100 1.4e-09 67.8 64 51.6


User provided reference genes

Program Settings