Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung04009 Brassica carinata HOM05D005964 ORTHO05D007242 6.1e-166 587.4 296 100.0
BcaC09g51437 Brassica carinata HOM05D005964 ORTHO05D007242 1.6e-150 536.2 295 91.2
A01p11100 Brassica napus HOM05D005964 ORTHO05D007242 4.0e-149 531.6 306 88.2
BraA01t01056Z Brassica rapa HOM05D005964 ORTHO05D007242 4.0e-149 531.6 306 88.2
C01p13130 Brassica napus HOM05D005964 ORTHO05D007242 7.5e-148 527.3 307 87.6
BolC1t01286H Brassica oleracea HOM05D005964 ORTHO05D007242 7.5e-148 527.3 307 87.6
Sp7g17840 Schrenkiella parvula HOM05D005964 ORTHO05D007242 9.7e-148 526.9 297 88.6
Thhalv10025843m.g Eutrema salsugineum HOM05D005964 ORTHO05D007242 8.2e-147 523.9 298 88.3
BcaNung03076 Brassica carinata HOM05D005964 ORTHO05D007242 8.5e-144 513.8 296 87.5
AL7G34950 Arabidopsis lyrata HOM05D005964 ORTHO05D007242 4.0e-141 505.0 302 84.1
BolC7t45529H Brassica oleracea HOM05D005964 ORTHO05D007242 5.2e-141 504.6 309 83.8
BcaC06g30611 Brassica carinata HOM05D005964 ORTHO05D007242 4.8e-139 498.0 302 83.8
AT4G19140 Arabidopsis thaliana HOM05D005964 ORTHO05D007242 4.1e-138 495.0 301 82.7
Carub.0007s2201 Capsella rubella HOM05D005964 ORTHO05D007242 9.1e-138 493.8 303 81.5
CARHR226010 Cardamine hirsuta HOM05D005964 ORTHO05D007242 4.7e-134 481.5 301 81.7
BraA03t14264Z Brassica rapa HOM05D005964 ORTHO05D007242 1.1e-130 470.3 312 79.5
Aa31LG6G1830 Aethionema arabicum HOM05D005964 ORTHO05D007242 8.9e-125 450.7 310 72.6
C07p50270 Brassica napus HOM05D005964 ORTHO05D007242 1.5e-111 406.8 296 74.3
THA.LOC104811073 Tarenaya hassleriana HOM05D005964 ORTHO05D007242 1.8e-109 399.8 294 69.0
A03p51750 Brassica napus HOM05D005964 ORTHO05D007242 1.6e-102 376.7 299 70.6
Gohir.A03G000012 Gossypium hirsutum HOM05D005964 ORTHO05D007242 1.6e-89 333.6 291 56.4
Thecc.03G317600 Theobroma cacao HOM05D005964 ORTHO05D007242 3.0e-88 329.3 291 54.6
Duzib205G1143 Durio zibethinus HOM05D005964 ORTHO05D007242 5.1e-88 328.6 291 55.7
Dinv28013 Davidia involucrata HOM05D005964 ORTHO05D007242 4.8e-86 322.0 291 55.3
Gorai.004G178600 Gossypium raimondii HOM05D005964 ORTHO05D007242 6.2e-86 321.6 291 55.0
Gohir.D03G177900 Gossypium hirsutum HOM05D005964 ORTHO05D007242 1.4e-85 320.5 313 52.7
Gorai.003G187200 Gossypium raimondii HOM05D005964 ORTHO05D007242 1.4e-85 320.5 313 52.7
Gohir.A08G150100 Gossypium hirsutum HOM05D005964 ORTHO05D007242 6.9e-85 318.2 291 54.0
Duzib084G0482 Durio zibethinus HOM05D005964 ORTHO05D007242 1.3e-83 313.9 291 55.3
CANSAT21G0049 Cannabis sativa HOM05D005964 ORTHO05D007242 4.2e-82 308.9 284 54.2
Ciclev10002048m.g Citrus clementina HOM05D005964 ORTHO05D007242 7.1e-82 308.1 277 53.1
THA.LOC104806194 Tarenaya hassleriana HOM05D005964 ORTHO05D007242 1.6e-81 307.0 249 65.1
Manes.17G003600 Manihot esculenta HOM05D005964 ORTHO05D007242 1.3e-80 303.9 292 51.7
Potri.001G130900 Populus trichocarpa HOM05D005964 ORTHO05D007242 3.0e-80 302.8 288 54.9
Cfa012590 Carpinus fangiana HOM05D005964 ORTHO05D007242 2.5e-79 299.7 287 51.6
Gohir.D08G171200 Gossypium hirsutum HOM05D005964 ORTHO05D007242 4.3e-79 298.9 254 57.9
Potri.003G103000 Populus trichocarpa HOM05D005964 ORTHO05D007242 9.6e-79 297.7 285 54.0
Prupe.5G020400 Prunus persica HOM05D005964 ORTHO05D007242 1.3e-78 297.4 291 50.9
Atru.chr6.1471 Acer truncatum HOM05D005964 ORTHO05D007242 2.8e-78 296.2 291 52.2
CsaV3_3G001060 Cucumis sativus L. HOM05D005964 ORTHO05D007242 1.4e-77 293.9 296 49.7
CiPaw.11G103200 Carya illinoinensis HOM05D005964 ORTHO05D007242 4.0e-77 292.4 289 52.2
Lj8A334G75 Lonicera japonica HOM05D005964 ORTHO05D007242 6.9e-77 291.6 292 51.4
Peaxi162Scf02295g00024 Petunia axillaris HOM05D005964 ORTHO05D007242 9.0e-77 291.2 295 53.9
Actinidia14743 Actinidia chinensis HOM05D005964 ORTHO05D007242 1.5e-76 290.4 294 50.7
Sed0000446 Sechium edule HOM05D005964 ORTHO05D007242 1.5e-76 290.4 296 49.0
MELO3C013795.2 Cucumis melo HOM05D005964 ORTHO05D007242 2.6e-76 289.7 296 49.0
MD00G1001800 Malus domestica HOM05D005964 ORTHO05D007242 7.6e-76 288.1 292 51.7
MD06G1015300 Malus domestica HOM05D005964 ORTHO05D007242 9.9e-76 287.7 291 50.5
Oeu046805.1 Olea europaea HOM05D005964 ORTHO05D007242 3.8e-75 285.8 288 50.0
Dinv22873 Davidia involucrata HOM05D005964 ORTHO05D007242 3.2e-74 282.7 281 51.2
Nitab4.5_0000030g0090 Nicotiana tabacum HOM05D005964 ORTHO05D007242 7.1e-74 281.6 282 51.8
Hma1.2p1_0544F.1_g175520 Hydrangea macrophylla HOM05D005964 ORTHO05D007242 1.6e-73 280.4 272 51.8
FAN18G2518 Fragaria x ananassa HOM05D005964 ORTHO05D007242 6.0e-73 278.5 275 49.5
Cc08_g05080 Coffea canephora HOM05D005964 ORTHO05D007242 1.0e-72 277.7 248 55.6
Nitab4.5_0002930g0010 Nicotiana tabacum HOM05D005964 ORTHO05D007242 1.0e-72 277.7 286 51.0
Glyma.09G213600 Glycine max HOM05D005964 ORTHO05D007242 1.8e-72 276.9 290 47.9
Actinidia18160 Actinidia chinensis HOM05D005964 ORTHO05D007242 3.0e-72 276.2 296 49.0
FvH4_5g23960 Fragaria vesca HOM05D005964 ORTHO05D007242 3.0e-72 276.2 278 49.6
CSS0036776 Camellia sinensis var. sinensis HOM05D005964 ORTHO05D007242 5.1e-72 275.4 218 56.9
RcHm_v2.0_Chr7g0213391 Rosa chinensis HOM05D005964 ORTHO05D007242 5.1e-72 275.4 291 47.8
FAN13G2421 Fragaria x ananassa HOM05D005964 ORTHO05D007242 8.7e-72 274.6 278 49.6
Lalb_Chr05g0215451 Lupinus albus HOM05D005964 ORTHO05D007242 1.9e-71 273.5 295 47.1
GSVIVG01022785001 Vitis vinifera HOM05D005964 ORTHO05D007242 3.3e-71 272.7 245 55.5
VMungo1215G0316 Vigna mungo HOM05D005964 ORTHO05D007242 1.3e-70 270.8 289 49.1
arahy.Tifrunner.gnm1.ann1.NL6YXC Arachis hypogaea HOM05D005964 ORTHO05D007242 3.7e-70 269.2 273 49.8
arahy.Tifrunner.gnm1.ann1.PBCI2P Arachis hypogaea HOM05D005964 ORTHO05D007242 3.7e-70 269.2 273 49.8
Migut.E01349 Erythranthe guttata HOM05D005964 ORTHO05D007242 4.8e-70 268.9 289 49.8
Glyma.01G149400 Glycine max HOM05D005964 ORTHO05D007242 4.8e-70 268.9 289 47.4
Solyc08g075770.3 Solanum lycopersicum HOM05D005964 ORTHO05D007242 8.1e-70 268.1 286 49.3
Eucgr.E01239 Eucalyptus grandis HOM05D005964 ORTHO05D007242 1.1e-69 267.7 276 49.6
Sopen08g024420 Solanum pennellii HOM05D005964 ORTHO05D007242 1.1e-69 267.7 286 49.3
TWI12G1028 Tripterygium wilfordii HOM05D005964 ORTHO05D007242 1.1e-69 267.7 297 49.5
Eucgr.E01230 Eucalyptus grandis HOM05D005964 ORTHO05D007242 1.8e-69 266.9 276 49.3
Lj2g0015502 Lotus japonicus HOM05D005964 ORTHO05D007242 9.0e-69 264.6 299 48.2
Psat2g142160 Pisum sativum HOM05D005964 ORTHO05D007242 1.5e-68 263.8 285 48.4
PGR042G2449 Punica granatum HOM05D005964 ORTHO05D007242 2.6e-68 263.1 291 47.1
Sabra03G0070200 Salix brachista HOM05D005964 ORTHO05D007242 3.4e-68 262.7 226 57.1
TAR381G0569 Trochodendron aralioides HOM05D005964 ORTHO05D007242 3.4e-68 262.7 291 45.4
MSTRG.1771 Avicennia marina HOM05D005964 ORTHO05D007242 6.5e-67 258.5 296 45.9
TPR.G17260 Trifolium pratense HOM05D005964 ORTHO05D007242 1.1e-66 257.7 297 47.1
Medtr5g026860 Medicago truncatula HOM05D005964 ORTHO05D007242 1.4e-66 257.3 280 48.2
Lsat_1_v5_gn_5_58981 Lactuca sativa HOM05D005964 ORTHO05D007242 2.5e-66 256.5 273 48.7
ECA240G3292 Erigeron canadensis HOM05D005964 ORTHO05D007242 7.1e-66 255.0 284 47.9
HanXRQChr13g0412031 Helianthus annuus HOM05D005964 ORTHO05D007242 7.1e-66 255.0 271 49.1
Rhsim07G0138900 Rhododendron simsii HOM05D005964 ORTHO05D007242 1.9e-63 246.9 222 51.8
Sc01g0007030 Simmondsia chinensis HOM05D005964 ORTHO05D007242 4.3e-63 245.7 257 49.0
EL10Ac5g11971 Beta vulgaris HOM05D005964 ORTHO05D007242 5.7e-63 245.4 283 44.9
MBI04_g27277_MAGBIO Magnolia biondii HOM05D005964 ORTHO05D007242 1.5e-60 237.3 299 41.8
AUR62018605 Chenopodium quinoa HOM05D005964 ORTHO05D007242 3.4e-60 236.1 245 46.9
SGA_v2.0_scaffold111G31365 Striga asiatica HOM05D005964 ORTHO05D007242 1.0e-59 234.6 293 44.4
unitig_899.g14736 Utricularia gibba HOM05D005964 ORTHO05D007242 1.0e-59 234.6 295 44.4
Hma1.2p1_0544F.1_g175510 Hydrangea macrophylla HOM05D005964 ORTHO05D007242 2.2e-59 233.4 199 58.8
AUR62007382 Chenopodium quinoa HOM05D005964 ORTHO05D007242 1.3e-56 224.2 222 49.5
Phvul.002G128700 Phaseolus vulgaris HOM05D005964 ORTHO05D007242 3.9e-56 222.6 222 49.5
HanXRQChr03g0081171 Helianthus annuus HOM05D005964 ORTHO05D007242 8.7e-56 221.5 262 46.2
QL12p001050 Quercus lobata HOM05D005964 ORTHO05D007242 1.9e-55 220.3 208 56.2
SalBow8G2874 Salvia bowleyana HOM05D005964 ORTHO05D007242 3.3e-55 219.5 216 53.2
Nn1g02066 Nelumbo nucifera HOM05D005964 ORTHO05D007242 5.7e-55 218.8 197 55.8
ClCG10G001030 Citrullus lanatus HOM05D005964 ORTHO05D007242 1.3e-54 217.6 296 41.2
DCAR_008183 Daucus carota HOM05D005964 ORTHO05D007242 3.7e-54 216.1 290 42.1
Aqoxy7G00888 Aquilegia oxysepala HOM05D005964 ORTHO05D007242 4.8e-54 215.7 241 44.4
FAN18G4345 Fragaria x ananassa HOM05D005964 ORTHO05D007242 1.1e-53 214.5 181 58.0
Os04g0600400 Oryza sativa ssp. japonica HOM05D005964 ORTHO05D007242 1.1e-53 214.5 278 44.2
arahy.Tifrunner.gnm1.ann1.MDU2JP Arachis hypogaea HOM05D005964 ORTHO05D007242 1.8e-53 213.8 275 42.9
PSO675G7054 Papaver somniferum HOM05D005964 ORTHO05D007242 3.1e-53 213.0 268 41.8
Sabra01G0101200 Salix brachista HOM05D005964 ORTHO05D007242 3.4e-52 209.5 222 51.4
vmacro14234 Vaccinium macrocarpon HOM05D005964 ORTHO05D007242 1.0e-51 208.0 314 37.9
PSO717G0069 Papaver somniferum HOM05D005964 ORTHO05D007242 1.7e-51 207.2 222 45.9
Zm00001eb071860 Zea mays HOM05D005964 ORTHO05D007242 5.0e-51 205.7 288 43.1
Hund11143 Selenicereus undatus HOM05D005964 ORTHO05D007242 7.9e-49 198.4 387 32.8
MSTRG.13905 Avicennia marina HOM05D005964 ORTHO05D007242 1.5e-47 194.1 193 53.9
AL8G21390 Arabidopsis lyrata HOM05D005964 ORTHO05D007242 2.9e-43 179.9 137 66.4
CDE12G0810 Ceratophyllum demersum HOM05D005964 ORTHO05D007242 3.8e-43 179.5 245 39.6
ATR0829G145 Amborella trichopoda HOM05D005964 ORTHO05D007242 2.7e-41 173.3 177 49.7
PGSC0003DMG400030871 Solanum tuberosum HOM05D005964 ORTHO05D007242 2.0e-39 167.2 175 45.7
Ah.12g055850 Amaranthus hybridus HOM05D005964 ORTHO05D007242 1.6e-36 157.5 179 41.3
SEGI_32375 Sequoiadendron giganteum HOM05D005964 ORTHO05D007242 2.3e-32 143.7 174 42.5
PSO717G0022 Papaver somniferum HOM05D005964 ORTHO05D007242 2.6e-31 140.2 140 50.7
Cpa.g.sc90.42 Carica papaya HOM05D005964 ORTHO05D007242 2.7e-28 130.2 82 69.5
HPP92_021116 Vanilla planifolia HOM05D005964 ORTHO05D007242 6.5e-27 125.6 188 38.3
Mapoly0153s0025 Marchantia polymorpha HOM05D005964 ORTHO05D007242 1.0e-19 101.7 235 31.5
Pp3c6_11480 Physcomitrium patens HOM05D005964 ORTHO05D007242 2.3e-19 100.5 290 30.0
Haze_08067 Corylus avellana HOM05D005964 ORTHO05D007242 6.8e-16 89.0 102 40.2
Haze_05991 Corylus avellana HOM05D005964 ORTHO05D007242 5.9e-12 75.9 159 37.1
Cpa.g.sc90.41 Carica papaya HOM05D005964 ORTHO05D007242 2.3e-11 73.9 44 77.3
AagrBONN_evm.TU.Sc2ySwM_344.1651 Anthoceros agrestis HOM05D005964 ORTHO05D007242 8.6e-11 72.0 91 39.6
Oeu042210.1 Olea europaea HOM05D005964 ORTHO05D007242 3.6e-09 66.6 50 48.0
Cpa.g.c47778 Carica papaya HOM05D005964 ORTHO05D007242 6.1e-09 65.9 40 65.0
CBR_g24057 Chara braunii HOM05D005964 ORTHO05D007242 8.9e-08 62.0 105 33.3


User provided reference genes

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