Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung04007 Brassica carinata HOM05D006098 ORTHO05D007470 3.6e-258 894.4 461 100.0
BcaC09g51434 Brassica carinata HOM05D006098 ORTHO05D007470 2.9e-215 751.9 463 89.0
C01p13160 Brassica napus HOM05D006098 ORTHO05D007470 7.1e-214 747.3 464 88.8
BolC1t01289H Brassica oleracea HOM05D006098 ORTHO05D007470 3.0e-212 741.9 467 87.8
BraA01t01058Z Brassica rapa HOM05D006098 ORTHO05D007470 1.6e-205 719.5 463 86.4
A01p11120 Brassica napus HOM05D006098 ORTHO05D007470 2.4e-201 705.7 469 84.0
Sp7g17860 Schrenkiella parvula HOM05D006098 ORTHO05D007470 1.0e-199 700.3 484 80.2
Thhalv10025127m.g Eutrema salsugineum HOM05D006098 ORTHO05D007470 3.8e-183 645.2 473 77.2
Carub.0007s2199 Capsella rubella HOM05D006098 ORTHO05D007470 5.0e-175 618.2 470 72.3
AT4G19160 Arabidopsis thaliana HOM05D006098 ORTHO05D007470 1.2e-173 613.6 468 73.1
AL7G34930 Arabidopsis lyrata HOM05D006098 ORTHO05D007470 1.6e-173 613.2 466 73.4
BolC3t20457H Brassica oleracea HOM05D006098 ORTHO05D007470 8.0e-173 610.9 465 73.8
BcaC01g00601 Brassica carinata HOM05D006098 ORTHO05D007470 5.2e-172 608.2 447 74.0
C03p81800 Brassica napus HOM05D006098 ORTHO05D007470 5.7e-171 604.7 448 74.6
A08p14200 Brassica napus HOM05D006098 ORTHO05D007470 9.1e-169 597.4 466 72.7
BraA08t33414Z Brassica rapa HOM05D006098 ORTHO05D007470 9.1e-169 597.4 466 72.7
BcaB04g18531 Brassica carinata HOM05D006098 ORTHO05D007470 4.5e-168 595.1 473 70.6
CARHR226030 Cardamine hirsuta HOM05D006098 ORTHO05D007470 5.4e-161 571.6 494 67.0
THA.LOC104811082 Tarenaya hassleriana HOM05D006098 ORTHO05D007470 2.7e-152 542.7 481 64.7
Aa31LG6G1850 Aethionema arabicum HOM05D006098 ORTHO05D007470 5.4e-145 518.5 463 64.6
Cpa.g.sc71.63 Carica papaya HOM05D006098 ORTHO05D007470 1.6e-133 480.3 453 60.0
COL.COLO4_10360 Corchorus olitorius HOM05D006098 ORTHO05D007470 1.1e-132 477.6 426 62.2
Potri.001G193400 Populus trichocarpa HOM05D006098 ORTHO05D007470 7.8e-128 461.5 461 58.6
Gorai.008G220000 Gossypium raimondii HOM05D006098 ORTHO05D007470 2.3e-127 459.9 426 61.7
Thecc.03G318000 Theobroma cacao HOM05D006098 ORTHO05D007470 2.3e-127 459.9 393 63.9
Duzib205G1615 Durio zibethinus HOM05D006098 ORTHO05D007470 1.9e-126 456.8 401 63.6
Gohir.A08G150000 Gossypium hirsutum HOM05D006098 ORTHO05D007470 3.6e-125 452.6 448 58.7
Gorai.004G178500 Gossypium raimondii HOM05D006098 ORTHO05D007470 3.1e-124 449.5 441 58.5
GSVIVG01036872001 Vitis vinifera HOM05D006098 ORTHO05D007470 6.9e-124 448.4 451 57.6
Sabra01G0135500 Salix brachista HOM05D006098 ORTHO05D007470 2.0e-123 446.8 455 57.6
Ah.12g058500 Amaranthus hybridus HOM05D006098 ORTHO05D007470 3.4e-123 446.0 449 57.2
Manes.15G184300 Manihot esculenta HOM05D006098 ORTHO05D007470 1.7e-122 443.7 423 58.2
Nn1g09368 Nelumbo nucifera HOM05D006098 ORTHO05D007470 2.9e-122 443.0 467 56.3
PGR031G3371 Punica granatum HOM05D006098 ORTHO05D007470 2.9e-122 443.0 404 62.1
AUR62010477 Chenopodium quinoa HOM05D006098 ORTHO05D007470 3.8e-122 442.6 457 55.6
EL10Ac5g12579 Beta vulgaris HOM05D006098 ORTHO05D007470 1.4e-121 440.7 457 56.5
Dinv41811 Davidia involucrata HOM05D006098 ORTHO05D007470 1.4e-121 440.7 451 57.2
Atru.chr8.2640 Acer truncatum HOM05D006098 ORTHO05D007470 2.4e-121 439.9 470 55.3
Potri.003G033300 Populus trichocarpa HOM05D006098 ORTHO05D007470 3.2e-121 439.5 397 62.0
TAR629G3250 Trochodendron aralioides HOM05D006098 ORTHO05D007470 3.0e-119 433.0 439 57.2
ECA246G0847 Erigeron canadensis HOM05D006098 ORTHO05D007470 2.5e-118 429.9 437 56.5
Actinidia01257 Actinidia chinensis HOM05D006098 ORTHO05D007470 4.3e-118 429.1 390 61.3
AUR62030416 Chenopodium quinoa HOM05D006098 ORTHO05D007470 2.1e-117 426.8 489 52.1
CSS0030969 Camellia sinensis var. sinensis HOM05D006098 ORTHO05D007470 3.6e-117 426.0 387 62.0
FvH4_2g37220 Fragaria vesca HOM05D006098 ORTHO05D007470 3.1e-116 422.9 385 61.6
FAN27G2650 Fragaria x ananassa HOM05D006098 ORTHO05D007470 3.1e-116 422.9 446 56.3
Rhsim11G0034900 Rhododendron simsii HOM05D006098 ORTHO05D007470 9.0e-116 421.4 387 60.2
Lj8A337G13 Lonicera japonica HOM05D006098 ORTHO05D007470 1.2e-115 421.0 366 62.6
Oeu042191.1 Olea europaea HOM05D006098 ORTHO05D007470 1.5e-115 420.6 400 59.5
Oeu042192.1 Olea europaea HOM05D006098 ORTHO05D007470 1.5e-115 420.6 400 59.5
Cc08_g05440 Coffea canephora HOM05D006098 ORTHO05D007470 2.0e-115 420.2 385 60.3
Duzib068G0239 Durio zibethinus HOM05D006098 ORTHO05D007470 2.0e-115 420.2 433 58.0
Actinidia14735 Actinidia chinensis HOM05D006098 ORTHO05D007470 2.6e-115 419.9 386 61.1
PGSC0003DMG400018483 Solanum tuberosum HOM05D006098 ORTHO05D007470 2.6e-115 419.9 377 61.0
Lsat_1_v5_gn_3_19721 Lactuca sativa HOM05D006098 ORTHO05D007470 4.5e-115 419.1 431 55.9
Oeu057164.1 Olea europaea HOM05D006098 ORTHO05D007470 4.5e-115 419.1 424 56.4
RcHm_v2.0_Chr6g0304491 Rosa chinensis HOM05D006098 ORTHO05D007470 5.8e-115 418.7 385 61.8
Sopen08g001580 Solanum pennellii HOM05D006098 ORTHO05D007470 5.8e-115 418.7 383 60.8
Nn7g37397 Nelumbo nucifera HOM05D006098 ORTHO05D007470 7.6e-115 418.3 459 54.7
DCAR_028369 Daucus carota HOM05D006098 ORTHO05D007470 1.3e-114 417.5 388 60.3
FAN20G1855 Fragaria x ananassa HOM05D006098 ORTHO05D007470 2.2e-114 416.8 447 55.9
HanXRQChr13g0411151 Helianthus annuus HOM05D006098 ORTHO05D007470 2.2e-114 416.8 381 60.6
CAN.G884.14 Capsicum annuum HOM05D006098 ORTHO05D007470 8.4e-114 414.8 377 60.7
CAN.G884.9 Capsicum annuum HOM05D006098 ORTHO05D007470 8.4e-114 414.8 377 60.7
Actinidia18166 Actinidia chinensis HOM05D006098 ORTHO05D007470 1.1e-113 414.5 386 60.6
FAN15G0890 Fragaria x ananassa HOM05D006098 ORTHO05D007470 2.4e-113 413.3 412 58.7
Peaxi162Scf00045g00071 Petunia axillaris HOM05D006098 ORTHO05D007470 3.2e-113 412.9 377 59.2
SalBow4G1396 Salvia bowleyana HOM05D006098 ORTHO05D007470 9.3e-113 411.4 379 59.6
Solyc08g005560.3 Solanum lycopersicum HOM05D006098 ORTHO05D007470 9.3e-113 411.4 383 59.8
vmacro00080 Vaccinium macrocarpon HOM05D006098 ORTHO05D007470 9.3e-113 411.4 382 60.5
Migut.A00537 Erythranthe guttata HOM05D006098 ORTHO05D007470 6.0e-112 408.7 420 55.7
MBI15_g33454_MAGBIO Magnolia biondii HOM05D006098 ORTHO05D007470 6.0e-112 408.7 378 60.3
Nitab4.5_0011712g0010 Nicotiana tabacum HOM05D006098 ORTHO05D007470 1.8e-111 407.1 418 55.5
ECA240G1264 Erigeron canadensis HOM05D006098 ORTHO05D007470 3.0e-111 406.4 377 59.7
SGA_v2.0_scaffold111G31352 Striga asiatica HOM05D006098 ORTHO05D007470 3.9e-111 406.0 394 57.9
MSTRG.1762 Avicennia marina HOM05D006098 ORTHO05D007470 5.1e-111 405.6 372 59.7
Lsat_1_v5_gn_5_57121 Lactuca sativa HOM05D006098 ORTHO05D007470 6.7e-111 405.2 394 59.1
HanXRQChr17g0537231 Helianthus annuus HOM05D006098 ORTHO05D007470 1.1e-110 404.4 398 58.8
HanXRQChr03g0081041 Helianthus annuus HOM05D006098 ORTHO05D007470 3.3e-110 402.9 429 54.8
Rhsim11G0035500 Rhododendron simsii HOM05D006098 ORTHO05D007470 4.3e-110 402.5 502 50.2
Nitab4.5_0000898g0120 Nicotiana tabacum HOM05D006098 ORTHO05D007470 7.4e-110 401.7 385 58.4
Dinv37422 Davidia involucrata HOM05D006098 ORTHO05D007470 2.8e-109 399.8 409 55.5
Peaxi162Scf00053g00062 Petunia axillaris HOM05D006098 ORTHO05D007470 6.2e-109 398.7 383 58.5
Nitab4.5_0000985g0060 Nicotiana tabacum HOM05D006098 ORTHO05D007470 8.1e-109 398.3 380 58.9
Oeu046790.1 Olea europaea HOM05D006098 ORTHO05D007470 4.0e-108 396.0 392 56.6
CAN.G1026.8 Capsicum annuum HOM05D006098 ORTHO05D007470 6.9e-108 395.2 383 58.2
Nitab4.5_0000030g0370 Nicotiana tabacum HOM05D006098 ORTHO05D007470 2.0e-107 393.7 379 58.6
Solyc08g075520.4 Solanum lycopersicum HOM05D006098 ORTHO05D007470 5.8e-107 392.1 383 58.2
Sabra03G0019100 Salix brachista HOM05D006098 ORTHO05D007470 1.7e-106 390.6 490 49.6
ATR0568G039 Amborella trichopoda HOM05D006098 ORTHO05D007470 4.9e-106 389.0 378 58.2
Gohir.D12G205100 Gossypium hirsutum HOM05D006098 ORTHO05D007470 6.4e-106 388.7 338 63.6
Gohir.A12G202400 Gossypium hirsutum HOM05D006098 ORTHO05D007470 1.4e-105 387.5 330 63.6
Nitab4.5_0001175g0140 Nicotiana tabacum HOM05D006098 ORTHO05D007470 5.5e-105 385.6 404 55.2
PSO541G2197 Papaver somniferum HOM05D006098 ORTHO05D007470 7.1e-105 385.2 465 50.1
Actinidia32783 Actinidia chinensis HOM05D006098 ORTHO05D007470 1.2e-104 384.4 388 57.5
PSO675G7908 Papaver somniferum HOM05D006098 ORTHO05D007470 4.6e-104 382.5 464 50.0
CDE01G0744 Ceratophyllum demersum HOM05D006098 ORTHO05D007470 5.6e-102 375.6 441 51.5
unitig_37.g12121 Utricularia gibba HOM05D006098 ORTHO05D007470 1.3e-101 374.4 376 55.6
Manes.17G016300 Manihot esculenta HOM05D006098 ORTHO05D007470 2.0e-99 367.1 397 53.7
SEGI_14227 Sequoiadendron giganteum HOM05D006098 ORTHO05D007470 6.0e-96 355.5 423 49.2
SalBow8G2199 Salvia bowleyana HOM05D006098 ORTHO05D007470 1.7e-90 337.4 378 52.4
Peaxi162Scf00876g00435 Petunia axillaris HOM05D006098 ORTHO05D007470 2.8e-85 320.1 375 51.7
PGSC0003DMG400016110 Solanum tuberosum HOM05D006098 ORTHO05D007470 1.0e-82 311.6 309 56.0
Sopen08g024170 Solanum pennellii HOM05D006098 ORTHO05D007470 1.3e-82 311.2 309 55.7
Gohir.D08G171101 Gossypium hirsutum HOM05D006098 ORTHO05D007470 2.4e-76 290.4 237 63.3
CAN.G947.35 Capsicum annuum HOM05D006098 ORTHO05D007470 6.1e-72 275.8 363 47.4
FAN27G0800 Fragaria x ananassa HOM05D006098 ORTHO05D007470 4.4e-70 269.6 291 55.7
MSTRG.13909 Avicennia marina HOM05D006098 ORTHO05D007470 9.4e-65 251.9 249 55.4
AagrBONN_evm.TU.Sc2ySwM_368.631 Anthoceros agrestis HOM05D006098 ORTHO05D007470 1.7e-53 214.5 365 38.1
Pp3c12_14620 Physcomitrium patens HOM05D006098 ORTHO05D007470 3.7e-45 186.8 408 34.6
FvH4_2g37180 Fragaria vesca HOM05D006098 ORTHO05D007470 2.7e-43 180.6 139 66.9
SMO364G0549 Selaginella moellendorffii HOM05D006098 ORTHO05D007470 1.7e-42 177.9 388 33.8
HanXRQChr05g0158621 Helianthus annuus HOM05D006098 ORTHO05D007470 3.6e-40 170.2 146 68.5
HanXRQChr09g0271561 Helianthus annuus HOM05D006098 ORTHO05D007470 2.7e-35 154.1 117 66.7
Hund11040 Selenicereus undatus HOM05D006098 ORTHO05D007470 3.4e-30 137.1 169 49.7
HanXRQChr11g0344761 Helianthus annuus HOM05D006098 ORTHO05D007470 4.4e-30 136.7 124 62.1
Eucgr.D02550 Eucalyptus grandis HOM05D006098 ORTHO05D007470 1.7e-26 124.8 135 51.1
Oeu015533.1 Olea europaea HOM05D006098 ORTHO05D007470 1.7e-26 124.8 167 44.3
Oeu042198.1 Olea europaea HOM05D006098 ORTHO05D007470 2.3e-26 124.4 237 38.4
Pp3c4_2130 Physcomitrium patens HOM05D006098 ORTHO05D007470 3.9e-26 123.6 330 30.3
Peaxi162Scf00527g00718 Petunia axillaris HOM05D006098 ORTHO05D007470 1.4e-20 105.1 205 33.7
Eucgr.D02551 Eucalyptus grandis HOM05D006098 ORTHO05D007470 7.1e-20 102.8 99 61.6
Rhsim11G0035700 Rhododendron simsii HOM05D006098 ORTHO05D007470 3.9e-18 97.1 165 41.2
RcHm_v2.0_Chr4g0402301 Rosa chinensis HOM05D006098 ORTHO05D007470 7.3e-17 92.8 98 51.0
Aa31sc19G30 Aethionema arabicum HOM05D006098 ORTHO05D007470 4.7e-16 90.1 220 33.2
Cre14.g621850 Chlamydomonas reinhardtii HOM05D006098 ORTHO05D007470 3.4e-14 84.0 230 29.6
HanXRQChr11g0344831 Helianthus annuus HOM05D006098 ORTHO05D007470 6.4e-13 79.7 78 57.7
Aa31LG3G3710 Aethionema arabicum HOM05D006098 ORTHO05D007470 1.1e-07 62.4 82 46.3
Sc11g0006450 Simmondsia chinensis HOM05D007414 ORTHO05D009482 3.4e-06 57.4 251 25.9
MCO08G142 Micromonas commoda HOM05D020588 ORTHO05D021297 5.8e-06 56.6 115 28.7
Prupe.1G352900 Prunus persica HOM05D006098 ORTHO05D007470 5.8e-06 56.6 62 58.1


User provided reference genes

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