Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung03998 Brassica carinata HOM05D001551 ORTHO05D005859 3.7e-162 574.7 272 100.0
BraA01t01589Z Brassica rapa HOM05D001551 ORTHO05D005859 5.1e-159 564.3 272 98.2
A01p16340 Brassica napus HOM05D001551 ORTHO05D005859 3.3e-158 561.6 272 97.8
C01p20490 Brassica napus HOM05D001551 ORTHO05D005859 1.6e-157 559.3 272 97.1
BcaC09g50811 Brassica carinata HOM05D001551 ORTHO05D005859 2.1e-157 558.9 271 97.0
BolC1t01980H Brassica oleracea HOM05D001551 ORTHO05D005859 1.2e-155 553.1 272 96.0
Sp7g23070 Schrenkiella parvula HOM05D001551 ORTHO05D005859 1.7e-151 539.3 272 94.1
Aa31LG3G7480 Aethionema arabicum HOM05D001551 ORTHO05D005859 5.4e-137 491.1 271 85.2
AT5G51020 Arabidopsis thaliana HOM05D001551 ORTHO05D005859 6.0e-136 487.6 272 85.7
AL8G25230 Arabidopsis lyrata HOM05D001551 ORTHO05D005859 1.7e-135 486.1 272 85.3
CARHR257170 Cardamine hirsuta HOM05D001551 ORTHO05D005859 8.7e-135 483.8 272 85.3
Sp6g13170 Schrenkiella parvula HOM05D001551 ORTHO05D005859 1.1e-134 483.4 272 84.6
BraA03t10931Z Brassica rapa HOM05D001551 ORTHO05D005859 1.5e-134 483.0 271 84.9
Carub.0008s1102 Capsella rubella HOM05D001551 ORTHO05D005859 2.0e-131 472.6 270 83.7
TWI23G1313 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 5.8e-131 471.1 272 80.5
THA.LOC104808046 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 7.6e-131 470.7 272 82.0
Thecc.03G141800 Theobroma cacao HOM05D001551 ORTHO05D005859 1.7e-130 469.5 272 80.1
A03p16410 Brassica napus HOM05D001551 ORTHO05D005859 4.9e-130 468.0 296 77.7
Potri.012G109800 Populus trichocarpa HOM05D001551 ORTHO05D005859 3.5e-128 461.8 270 78.1
Sabra12G0080000 Salix brachista HOM05D001551 ORTHO05D005859 5.1e-127 458.0 272 77.2
TAR629G2635 Trochodendron aralioides HOM05D001551 ORTHO05D005859 8.7e-127 457.2 272 78.3
BcaC01g06112 Brassica carinata HOM05D001551 ORTHO05D005859 3.3e-126 455.3 275 81.8
Cpa.g.sc2215.3 Carica papaya HOM05D001551 ORTHO05D005859 7.4e-126 454.1 269 79.2
Gohir.A11G038800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 7.4e-126 454.1 267 78.3
Duzib205G1491 Durio zibethinus HOM05D001551 ORTHO05D005859 2.1e-125 452.6 272 77.9
Atru.chr6.1937 Acer truncatum HOM05D001551 ORTHO05D005859 2.8e-125 452.2 263 79.8
Glyma.04G202400 Glycine max HOM05D001551 ORTHO05D005859 2.8e-125 452.2 272 76.5
RcHm_v2.0_Chr7g0188531 Rosa chinensis HOM05D001551 ORTHO05D005859 4.8e-125 451.4 271 78.2
Manes.14G043800 Manihot esculenta HOM05D001551 ORTHO05D005859 1.4e-124 449.9 272 78.3
Gohir.D11G042000 Gossypium hirsutum HOM05D001551 ORTHO05D005859 2.4e-124 449.1 267 77.2
MD14G1145900 Malus domestica HOM05D001551 ORTHO05D005859 5.3e-124 448.0 272 77.2
Phvul.009G160500 Phaseolus vulgaris HOM05D001551 ORTHO05D005859 6.9e-124 447.6 269 75.8
Prupe.5G140300 Prunus persica HOM05D001551 ORTHO05D005859 1.2e-123 446.8 272 77.2
GSVIVG01008663001 Vitis vinifera HOM05D001551 ORTHO05D005859 1.2e-123 446.8 269 77.0
COL.COLO4_37269 Corchorus olitorius HOM05D001551 ORTHO05D005859 2.0e-123 446.0 269 76.2
Lj1g0018460 Lotus japonicus HOM05D001551 ORTHO05D005859 2.0e-123 446.0 266 77.8
Ciclev10032408m.g Citrus clementina HOM05D001551 ORTHO05D005859 2.6e-123 445.7 273 78.8
Glyma.06G163100 Glycine max HOM05D001551 ORTHO05D005859 2.6e-123 445.7 266 74.8
Cfa018920 Carpinus fangiana HOM05D001551 ORTHO05D005859 4.5e-123 444.9 256 79.3
MD06G1129000 Malus domestica HOM05D001551 ORTHO05D005859 4.5e-123 444.9 272 76.5
Medtr3g098510 Medicago truncatula HOM05D001551 ORTHO05D005859 5.8e-123 444.5 266 75.9
Lj9C488G12 Lonicera japonica HOM05D001551 ORTHO05D005859 1.3e-122 443.4 261 77.4
Lalb_Chr08g0237601 Lupinus albus HOM05D001551 ORTHO05D005859 1.3e-122 443.4 269 75.5
Hma1.2p1_0577F.1_g182180 Hydrangea macrophylla HOM05D001551 ORTHO05D005859 2.9e-122 442.2 258 80.6
Gorai.007G045200 Gossypium raimondii HOM05D001551 ORTHO05D005859 3.8e-122 441.8 268 76.5
CSS0038575 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 4.9e-122 441.4 269 76.2
Cfa018698 Carpinus fangiana HOM05D001551 ORTHO05D005859 6.5e-122 441.0 256 79.3
Cc04_g05770 Coffea canephora HOM05D001551 ORTHO05D005859 6.5e-122 441.0 283 73.1
CSS0002484 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 1.9e-121 439.5 272 76.1
FAN04G0171 Fragaria x ananassa HOM05D001551 ORTHO05D005859 1.9e-121 439.5 275 76.7
QL10p000300 Quercus lobata HOM05D001551 ORTHO05D005859 1.9e-121 439.5 255 78.4
Gohir.A03G055800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 3.2e-121 438.7 267 77.9
FvH4_5g09710 Fragaria vesca HOM05D001551 ORTHO05D005859 4.2e-121 438.3 275 76.4
FAN08G3006 Fragaria x ananassa HOM05D001551 ORTHO05D005859 5.5e-121 438.0 259 79.2
Solyc06g068760.3 Solanum lycopersicum HOM05D001551 ORTHO05D005859 7.1e-121 437.6 271 76.0
Aqoxy5G03068 Aquilegia oxysepala HOM05D001551 ORTHO05D005859 9.3e-121 437.2 272 74.6
PSO478G5149 Papaver somniferum HOM05D001551 ORTHO05D005859 1.6e-120 436.4 272 75.4
Ca_10874_v3 Cicer arietinum L. HOM05D001551 ORTHO05D005859 2.1e-120 436.0 260 76.2
FAN18G2118 Fragaria x ananassa HOM05D001551 ORTHO05D005859 2.1e-120 436.0 275 76.0
TAR371G0091 Trochodendron aralioides HOM05D001551 ORTHO05D005859 2.7e-120 435.6 272 76.5
Lsat_1_v5_gn_5_9381 Lactuca sativa HOM05D001551 ORTHO05D005859 4.6e-120 434.9 265 75.8
PSO017G1738 Papaver somniferum HOM05D001551 ORTHO05D005859 4.6e-120 434.9 272 75.0
CiPaw.12G000400 Carya illinoinensis HOM05D001551 ORTHO05D005859 7.9e-120 434.1 255 76.1
Gorai.003G117100 Gossypium raimondii HOM05D001551 ORTHO05D005859 7.9e-120 434.1 272 76.1
FAN13G0525 Fragaria x ananassa HOM05D001551 ORTHO05D005859 1.3e-119 433.3 259 78.4
PGSC0003DMG400025575 Solanum tuberosum HOM05D001551 ORTHO05D005859 1.3e-119 433.3 272 76.1
Sopen06g026040 Solanum pennellii HOM05D001551 ORTHO05D005859 1.8e-119 433.0 272 75.7
arahy.Tifrunner.gnm1.ann1.D8JD58 Arachis hypogaea HOM05D001551 ORTHO05D005859 3.0e-119 432.2 269 73.2
arahy.Tifrunner.gnm1.ann1.Q2CTBB Arachis hypogaea HOM05D001551 ORTHO05D005859 3.0e-119 432.2 269 73.2
Rhsim12G0181300 Rhododendron simsii HOM05D001551 ORTHO05D005859 3.0e-119 432.2 270 75.2
THA.LOC104811554 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 8.7e-119 430.6 239 82.8
MELO3C002387.2 Cucumis melo HOM05D001551 ORTHO05D005859 2.5e-118 429.1 268 74.3
Actinidia08913 Actinidia chinensis HOM05D001551 ORTHO05D005859 3.3e-118 428.7 272 73.5
MSTRG.22814 Avicennia marina HOM05D001551 ORTHO05D005859 3.3e-118 428.7 271 74.5
CsaV3_1G009930 Cucumis sativus L. HOM05D001551 ORTHO05D005859 9.6e-118 427.2 268 73.9
Haze_07303 Corylus avellana HOM05D006543 ORTHO05D008308 1.6e-117 426.4 248 79.0
Manes.06G127400 Manihot esculenta HOM05D001551 ORTHO05D005859 1.6e-117 426.4 272 75.7
Actinidia36846 Actinidia chinensis HOM05D001551 ORTHO05D005859 1.1e-116 423.7 272 74.3
SalBow7G1162 Salvia bowleyana HOM05D001551 ORTHO05D005859 1.8e-116 422.9 270 74.1
HanXRQChr05g0155371 Helianthus annuus HOM05D001551 ORTHO05D005859 2.4e-116 422.5 267 74.5
Migut.I00664 Erythranthe guttata HOM05D001551 ORTHO05D005859 6.9e-116 421.0 260 75.8
CAN.G1089.16 Capsicum annuum HOM05D001551 ORTHO05D005859 9.0e-116 420.6 271 73.4
Psat5g055440 Pisum sativum HOM05D001551 ORTHO05D005859 9.0e-116 420.6 260 73.1
Nitab4.5_0007345g0100 Nicotiana tabacum HOM05D001551 ORTHO05D005859 1.2e-115 420.2 269 74.7
PGR044G0460 Punica granatum HOM05D001551 ORTHO05D005859 1.2e-115 420.2 263 76.0
Nitab4.5_0012775g0030 Nicotiana tabacum HOM05D001551 ORTHO05D005859 7.6e-115 417.5 269 74.0
vmacro16761 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 7.6e-115 417.5 278 73.4
Hund10026 Selenicereus undatus HOM05D001551 ORTHO05D005859 1.0e-114 417.2 256 73.8
EL10Ac5g11272 Beta vulgaris HOM05D001551 ORTHO05D005859 2.9e-114 415.6 272 71.0
Eucgr.K02189 Eucalyptus grandis HOM05D001551 ORTHO05D005859 2.9e-114 415.6 264 74.2
Sed0027340 Sechium edule HOM05D001551 ORTHO05D005859 2.9e-114 415.6 258 73.6
Sc04g0000180 Simmondsia chinensis HOM05D001551 ORTHO05D005859 1.4e-113 413.3 282 70.9
TWI39G0428 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 1.9e-113 412.9 271 73.1
Gohir.D03G110700 Gossypium hirsutum HOM05D001551 ORTHO05D005859 2.5e-113 412.5 241 79.7
Thhalv10014437m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 2.7e-112 409.1 212 89.6
CDE02G1325 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 1.8e-111 406.4 267 70.8
Rhsim08G0198700 Rhododendron simsii HOM05D001551 ORTHO05D005859 2.3e-111 406.0 253 73.5
AUR62043378 Chenopodium quinoa HOM05D001551 ORTHO05D005859 3.0e-111 405.6 292 65.8
AUR62032208 Chenopodium quinoa HOM05D001551 ORTHO05D005859 1.5e-110 403.3 290 66.2
unitig_27.g25103 Utricularia gibba HOM05D001551 ORTHO05D005859 5.7e-110 401.4 272 70.2
vmacro19115 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 8.2e-109 397.5 253 72.7
Sed0019000 Sechium edule HOM05D001551 ORTHO05D005859 3.1e-108 395.6 258 72.1
Oeu051186.2 Olea europaea HOM05D001551 ORTHO05D005859 1.2e-107 393.7 288 66.0
SGA_v2.0_scaffold5G02806 Striga asiatica HOM05D001551 ORTHO05D005859 1.9e-105 386.3 275 67.6
Peaxi162Scf00207g00254 Petunia axillaris HOM05D001551 ORTHO05D005859 5.5e-105 384.8 272 69.5
DCAR_025640 Daucus carota HOM05D001551 ORTHO05D005859 9.4e-105 384.0 267 69.7
Os11g0524300 Oryza sativa ssp. japonica HOM05D001551 ORTHO05D005859 6.1e-104 381.3 233 72.5
ClCG03G004050 Citrullus lanatus HOM05D001551 ORTHO05D005859 1.4e-103 380.2 235 74.5
MBI07_g13940_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 1.5e-102 376.7 295 63.1
SGA_v2.0_scaffold37G14673 Striga asiatica HOM05D001551 ORTHO05D005859 2.0e-102 376.3 220 77.3
Zm00001eb170550 Zea mays HOM05D001551 ORTHO05D005859 6.3e-101 371.3 233 70.4
Dinv13710 Davidia involucrata HOM05D001551 ORTHO05D005859 6.9e-100 367.9 212 79.2
Actinidia18288 Actinidia chinensis HOM05D001551 ORTHO05D005859 2.6e-99 365.9 237 72.6
AagrBONN_evm.TU.Sc2ySwM_368.1985 Anthoceros agrestis HOM05D001551 ORTHO05D005859 1.0e-98 364.0 250 63.6
Mapoly0002s0145 Marchantia polymorpha HOM05D001551 ORTHO05D005859 1.0e-98 364.0 238 67.6
Pp3c5_10130 Physcomitrium patens HOM05D001551 ORTHO05D005859 3.2e-97 359.0 234 65.8
Pp3c6_23000 Physcomitrium patens HOM05D001551 ORTHO05D005859 7.9e-96 354.4 237 66.2
SMO118G0459 Selaginella moellendorffii HOM05D001551 ORTHO05D005859 8.8e-95 350.9 219 68.5
TPR.G16934 Trifolium pratense HOM05D001551 ORTHO05D005859 6.5e-90 334.7 195 76.9
Actinidia25511 Actinidia chinensis HOM05D001551 ORTHO05D005859 1.5e-89 333.6 221 70.1
AUR62011939 Chenopodium quinoa HOM05D001551 ORTHO05D005859 3.2e-89 332.4 309 55.3
Nn4g22121 Nelumbo nucifera HOM05D001551 ORTHO05D005859 8.0e-88 327.8 272 60.7
Thhalv10025970m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 8.8e-87 324.3 157 99.4
Haze_07088 Corylus avellana HOM05D001551 ORTHO05D005859 2.6e-86 322.8 233 66.1
AUR62043863 Chenopodium quinoa HOM05D001551 ORTHO05D005859 1.6e-83 313.5 339 50.4
Nn3g16260 Nelumbo nucifera HOM05D001551 ORTHO05D005859 1.6e-83 313.5 169 81.7
Dinv23235 Davidia involucrata HOM05D001551 ORTHO05D005859 1.9e-81 306.6 181 78.5
Hund02515 Selenicereus undatus HOM05D001551 ORTHO05D005859 2.1e-80 303.1 291 54.6
SEGI_34423 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 2.0e-78 296.6 200 66.5
CBR_g30803 Chara braunii HOM05D001551 ORTHO05D005859 8.3e-77 291.2 218 56.4
Duzib084G0881 Durio zibethinus HOM05D001551 ORTHO05D005859 1.0e-71 274.2 164 75.6
MBI07_g35983_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 4.0e-63 245.7 163 71.8
MBI07_g48061_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 2.9e-61 239.6 138 78.3
HPP92_009738 Vanilla planifolia HOM05D001551 ORTHO05D005859 8.6e-58 228.0 199 57.3
CDE06G0746 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 4.3e-57 225.7 219 55.3
Sc04g0000130 Simmondsia chinensis HOM05D001551 ORTHO05D005859 1.9e-49 200.3 123 76.4
Sc04g0000140 Simmondsia chinensis HOM05D001551 ORTHO05D005859 8.9e-47 191.4 124 72.6
CSS0038626 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 3.2e-28 129.8 107 62.6
CSS0016811 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 1.3e-26 124.4 79 75.9
FvH4_6g04500 Fragaria vesca HOM05D001551 ORTHO05D005859 8.7e-26 121.7 72 79.2
Psat3g122800 Pisum sativum HOM05D001551 ORTHO05D005859 2.5e-25 120.2 81 67.9
SEGI_13041 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 3.6e-24 116.3 66 71.2
ECA246G1749 Erigeron canadensis HOM05D001551 ORTHO05D005859 6.9e-23 112.1 66 78.8
Pp3c16_270 Physcomitrium patens HOM05D001551 ORTHO05D005859 1.5e-22 110.9 65 72.3
Psat7g261640 Pisum sativum HOM05D001551 ORTHO05D005859 6.0e-19 99.0 88 60.2
Cfa013473 Carpinus fangiana HOM05D001551 ORTHO05D005859 1.3e-18 97.8 61 78.7
BcaC01g06064 Brassica carinata HOM05D001551 ORTHO05D005859 3.3e-17 93.2 86 60.5
HanXRQChr05g0130591 Helianthus annuus HOM05D001551 ORTHO05D005859 9.6e-17 91.7 52 75.0
C03p19300 Brassica napus HOM05D001551 ORTHO05D042173 9.0e-15 85.1 73 56.2
Duzib084G0670 Durio zibethinus HOM05D001551 ORTHO05D005859 3.2e-12 76.6 60 66.7
Psat5g306440 Pisum sativum HOM05D001551 ORTHO05D006558 5.5e-12 75.9 70 57.1
Ah.11g046990 Amaranthus hybridus HOM05D001551 ORTHO05D005859 6.0e-11 72.4 55 61.8
Sabra15G0128500 Salix brachista HOM05D001551 ORTHO05D003058 7.9e-11 72.0 76 48.7
Ah.02g114530 Amaranthus hybridus HOM05D001551 ORTHO05D005859 8.7e-10 68.6 98 38.8
SEGI_34327 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 1.3e-08 64.7 67 50.7
BolC3t14316H Brassica oleracea HOM05D001551 ORTHO05D042173 2.4e-07 60.5 159 29.6


User provided reference genes

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