Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung03909 Brassica carinata HOM05D005826 ORTHO05D004357 3.6e-127 458.4 250 100.0
Thhalv10004695m.g Eutrema salsugineum HOM05D005826 ORTHO05D004357 2.0e-53 213.4 225 62.2
AT5G26610 Arabidopsis thaliana HOM05D005826 ORTHO05D004357 2.5e-51 206.5 224 59.4
AL6G38590 Arabidopsis lyrata HOM05D005826 ORTHO05D004357 7.2e-51 204.9 254 54.7
Carub.0006s2438 Capsella rubella HOM05D005826 ORTHO05D004357 9.3e-51 204.5 228 57.5
A09p05710 Brassica napus HOM05D005826 ORTHO05D004357 6.1e-50 201.8 222 55.4
BraA09t36211Z Brassica rapa HOM05D005826 ORTHO05D004357 6.1e-50 201.8 222 55.4
SGA_v2.0_scaffold22G09707 Striga asiatica HOM05D005826 ORTHO05D004357 7.9e-50 201.4 227 52.0
AUR62006820 Chenopodium quinoa HOM05D005826 ORTHO05D004357 6.9e-46 188.3 226 49.1
COL.COLO4_05485 Corchorus olitorius HOM05D005826 ORTHO05D004357 6.9e-46 188.3 227 49.8
BcaC04g23633 Brassica carinata HOM05D005826 ORTHO05D004357 9.1e-46 188.0 222 53.2
C09p06300 Brassica napus HOM05D005826 ORTHO05D004357 9.1e-46 188.0 222 53.2
BolC9t53550H Brassica oleracea HOM05D005826 ORTHO05D004357 9.1e-46 188.0 222 53.2
Eucgr.B01823 Eucalyptus grandis HOM05D005826 ORTHO05D004357 1.3e-44 184.1 223 51.6
Migut.N00974 Erythranthe guttata HOM05D005826 ORTHO05D004357 2.2e-44 183.3 230 47.8
VMungo1383G1915 Vigna mungo HOM05D005826 ORTHO05D004357 1.1e-43 181.0 214 53.3
SEGI_10560 Sequoiadendron giganteum HOM05D005826 ORTHO05D004357 1.9e-43 180.3 219 47.5
Hund21832 Selenicereus undatus HOM05D005826 ORTHO05D004357 5.5e-43 178.7 235 48.5
Thecc.05G329600 Theobroma cacao HOM05D005826 ORTHO05D004357 1.2e-42 177.6 225 49.8
TAR636G1621 Trochodendron aralioides HOM05D005826 ORTHO05D004357 1.2e-42 177.6 210 49.5
PGR083G1613 Punica granatum HOM05D005826 ORTHO05D004357 1.6e-42 177.2 226 47.3
Lj5C318G10 Lonicera japonica HOM05D002908 ORTHO05D007390 2.1e-42 176.8 224 50.4
AUR62000478 Chenopodium quinoa HOM05D005826 ORTHO05D004357 3.6e-42 176.0 220 48.2
BcaB04g19716 Brassica carinata HOM05D005826 ORTHO05D004357 7.9e-42 174.9 222 53.6
FAN09G2233 Fragaria x ananassa HOM05D005826 ORTHO05D004357 7.9e-42 174.9 228 50.0
HPP92_027884 Vanilla planifolia HOM05D005826 ORTHO05D004357 7.9e-42 174.9 227 44.9
HPP92_006322 Vanilla planifolia HOM05D005826 ORTHO05D004357 1.0e-41 174.5 227 44.9
Solyc01g101250.3 Solanum lycopersicum HOM05D005826 ORTHO05D004357 3.0e-41 172.9 214 50.9
Sopen01g044700 Solanum pennellii HOM05D005826 ORTHO05D004357 3.0e-41 172.9 214 50.9
unitig_26.g9561 Utricularia gibba HOM05D005826 ORTHO05D005018 8.8e-41 171.4 223 45.7
EL10Ac4g09561 Beta vulgaris HOM05D005826 ORTHO05D004357 2.0e-40 170.2 210 50.0
Hund07271 Selenicereus undatus HOM05D005826 ORTHO05D004357 2.6e-40 169.9 230 50.0
Phvul.001G222000 Phaseolus vulgaris HOM05D005826 ORTHO05D004357 3.3e-40 169.5 214 51.4
Sp2g21260 Schrenkiella parvula HOM05D005826 ORTHO05D004357 9.7e-40 167.9 228 51.8
Psat3g015120 Pisum sativum HOM05D005826 ORTHO05D004357 8.2e-39 164.9 213 50.2
TWI12G0016 Tripterygium wilfordii HOM05D005826 ORTHO05D004357 8.2e-39 164.9 214 51.4
arahy.Tifrunner.gnm1.ann1.CWLZ7L Arachis hypogaea HOM05D005826 ORTHO05D004357 1.4e-38 164.1 232 46.6
MD12G1199800 Malus domestica HOM05D005826 ORTHO05D004357 1.4e-38 164.1 217 50.2
THA.LOC104821749 Tarenaya hassleriana HOM05D005826 ORTHO05D004357 1.4e-38 164.1 231 50.2
Lj1g0011738 Lotus japonicus HOM05D005826 ORTHO05D004357 1.8e-38 163.7 215 49.8
Manes.08G107500 Manihot esculenta HOM05D005826 ORTHO05D004357 1.8e-38 163.7 226 47.8
CANSAT54G1651 Cannabis sativa HOM05D005826 ORTHO05D004357 3.1e-38 162.9 222 49.1
Hma1.2p1_0052F.1_g030400 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 6.9e-38 161.8 227 48.0
CARHR186850 Cardamine hirsuta HOM05D005826 ORTHO05D004357 2.0e-37 160.2 218 51.8
Lalb_Chr18g0046231 Lupinus albus HOM05D005826 ORTHO05D004357 2.0e-37 160.2 216 49.5
GSVIVG01031331001 Vitis vinifera HOM05D005826 ORTHO05D004357 5.9e-37 158.7 240 45.0
Mapoly0026s0010 Marchantia polymorpha HOM05D005826 ORTHO05D004357 1.0e-36 157.9 224 45.1
TPR.G1630 Trifolium pratense HOM05D005826 ORTHO05D004357 1.0e-36 157.9 233 45.9
Hma1.2p1_0052F.1_g030390 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 1.7e-36 157.1 163 56.4
Sc09g0002410 Simmondsia chinensis HOM05D005826 ORTHO05D004357 1.7e-36 157.1 224 48.2
Sabra13G0001500 Salix brachista HOM05D005826 ORTHO05D004357 2.2e-36 156.8 145 57.2
Ca_09273_v3 Cicer arietinum L. HOM05D005826 ORTHO05D004357 2.9e-36 156.4 228 46.5
DCAR_006590 Daucus carota HOM05D005826 ORTHO05D004357 5.0e-36 155.6 135 60.0
CAN.G1248.16 Capsicum annuum HOM05D005826 ORTHO05D004357 8.5e-36 154.8 243 45.7
Cfa006771 Carpinus fangiana HOM05D005826 ORTHO05D004357 1.4e-35 154.1 224 46.4
Glyma.03G228100 Glycine max HOM05D005826 ORTHO05D004357 1.9e-35 153.7 214 48.6
ATR0796G273 Amborella trichopoda HOM05D005826 ORTHO05D004357 3.2e-35 152.9 217 46.5
FvH4_6g08510 Fragaria vesca HOM05D005826 ORTHO05D004357 3.2e-35 152.9 228 46.5
FAN14G1262 Fragaria x ananassa HOM05D005826 ORTHO05D004357 3.2e-35 152.9 228 46.5
Haze_03986 Corylus avellana HOM05D005826 ORTHO05D004357 5.5e-35 152.1 213 47.4
Atru.chr12.1539 Acer truncatum HOM05D005826 ORTHO05D004357 9.4e-35 151.4 226 46.0
arahy.Tifrunner.gnm1.ann1.TKMT5T Arachis hypogaea HOM05D005826 ORTHO05D004357 2.7e-34 149.8 232 44.0
CiPaw.07G036400 Carya illinoinensis HOM05D005826 ORTHO05D004357 4.7e-34 149.1 226 45.6
Aa31LG11G9920 Aethionema arabicum HOM05D005826 ORTHO05D004357 6.1e-34 148.7 233 48.1
Dinv30950 Davidia involucrata HOM05D005826 ORTHO05D004357 6.1e-34 148.7 221 44.8
Nn3g21953 Nelumbo nucifera HOM05D005826 ORTHO05D004357 1.4e-33 147.5 217 45.2
Sed0027683 Sechium edule HOM05D005826 ORTHO05D004357 1.4e-33 147.5 219 46.1
Manes.09G181300 Manihot esculenta HOM05D005826 ORTHO05D004357 2.3e-33 146.7 224 46.0
Glyma.19G225400 Glycine max HOM05D005826 ORTHO05D004357 3.0e-33 146.4 217 47.0
Rhsim11G0104700 Rhododendron simsii HOM05D005826 ORTHO05D004357 3.0e-33 146.4 212 48.6
SMO196G0190 Selaginella moellendorffii HOM05D005826 ORTHO05D004357 3.0e-33 146.4 225 41.8
Cpa.g.sc48.51 Carica papaya HOM05D005826 ORTHO05D004357 5.2e-33 145.6 239 45.2
Rhsim11G0105000 Rhododendron simsii HOM05D005826 ORTHO05D004357 5.2e-33 145.6 218 45.9
vmacro01667 Vaccinium macrocarpon HOM05D005826 ORTHO05D004357 5.2e-33 145.6 218 46.3
Pp3c20_6860 Physcomitrium patens HOM05D005826 ORTHO05D004357 1.1e-32 144.4 230 43.5
Ciclev10012662m.g Citrus clementina HOM05D005826 ORTHO05D004357 2.0e-32 143.7 237 43.9
Medtr7g111520 Medicago truncatula HOM05D005826 ORTHO05D004357 2.6e-32 143.3 216 44.4
CsaV3_1G038040 Cucumis sativus L. HOM05D005826 ORTHO05D004357 4.4e-32 142.5 216 45.4
Nn4g25335 Nelumbo nucifera HOM05D005826 ORTHO05D004357 7.4e-32 141.7 223 43.5
MSTRG.27910 Avicennia marina HOM05D005826 ORTHO05D004357 6.3e-31 138.7 226 41.6
Actinidia17738 Actinidia chinensis HOM05D005826 ORTHO05D004357 1.8e-30 137.1 233 42.1
Lsat_1_v5_gn_7_64900 Lactuca sativa HOM05D005826 ORTHO05D004357 1.8e-30 137.1 242 40.5
Zm00001eb089260 Zea mays HOM05D005826 ORTHO05D004357 9.1e-30 134.8 138 51.4
Aqoxy2G02470 Aquilegia oxysepala HOM05D005826 ORTHO05D004357 2.0e-29 133.7 228 42.5
ECA240G4745 Erigeron canadensis HOM05D005826 ORTHO05D004357 3.5e-29 132.9 147 49.7
CBR_g48434 Chara braunii HOM05D005826 ORTHO05D004357 5.9e-29 132.1 148 47.3
MBI12_g27791_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 5.9e-29 132.1 127 54.3
Ah.06g190730 Amaranthus hybridus HOM05D005826 ORTHO05D004357 5.0e-28 129.0 126 54.0
FAN02G3127 Fragaria x ananassa HOM05D005826 ORTHO05D004357 1.2e-26 124.4 226 41.6
ClCG03G017880 Citrullus lanatus HOM05D005826 ORTHO05D004357 1.6e-26 124.0 169 42.6
Dinv24515 Davidia involucrata HOM05D005826 ORTHO05D004357 8.0e-26 121.7 214 42.1
Peaxi162Scf00194g00018 Petunia axillaris HOM05D005826 ORTHO05D004357 1.4e-25 120.9 214 41.6
Prupe.6G304400 Prunus persica HOM05D005826 ORTHO05D004357 7.5e-24 115.2 229 39.7
HanXRQChr09g0247941 Helianthus annuus HOM05D005826 ORTHO05D004357 9.7e-24 114.8 137 47.4
RcHm_v2.0_Chr3g0458551 Rosa chinensis HOM05D005826 ORTHO05D004357 1.1e-22 111.3 232 38.4
Nitab4.5_0002516g0020 Nicotiana tabacum HOM05D005826 ORTHO05D004357 1.8e-22 110.5 244 34.8
Nitab4.5_0005662g0030 Nicotiana tabacum HOM05D005826 ORTHO05D004357 2.4e-22 110.2 244 35.7
FAN05G0435 Fragaria x ananassa HOM05D005826 ORTHO05D004357 4.1e-22 109.4 228 39.0
Os04g0115400 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 1.2e-21 107.8 89 55.1
Potri.005G002700 Populus trichocarpa HOM05D005826 ORTHO05D004357 1.2e-21 107.8 226 38.1
Cc02_g35870 Coffea canephora HOM05D005826 ORTHO05D004357 1.6e-21 107.5 260 36.2
Gorai.013G210000 Gossypium raimondii HOM05D005826 ORTHO05D004357 2.2e-20 103.6 226 37.2
Cre03.g201250 Chlamydomonas reinhardtii HOM05D005826 ORTHO05D004357 2.9e-20 103.2 172 40.1
Gohir.D13G184300 Gossypium hirsutum HOM05D005826 ORTHO05D004357 3.8e-20 102.8 228 36.8
PSO761G0619 Papaver somniferum HOM05D005826 ORTHO05D004357 8.5e-20 101.7 137 42.3
CSS0017545 Camellia sinensis var. sinensis HOM05D005826 ORTHO05D004357 1.1e-19 101.3 226 36.7
CSS0045001 Camellia sinensis var. sinensis HOM05D005826 ORTHO05D004357 1.1e-19 101.3 226 36.7
Gohir.A13G177700 Gossypium hirsutum HOM05D005826 ORTHO05D004357 1.1e-19 101.3 141 41.8
BraA06t26622Z Brassica rapa HOM05D005826 ORTHO05D004357 4.2e-19 99.4 117 52.1
QL03p011008 Quercus lobata HOM05D005826 ORTHO05D004357 4.2e-19 99.4 232 36.6
AagrBONN_evm.TU.Sc2ySwM_362.2503 Anthoceros agrestis HOM05D005826 ORTHO05D004357 1.2e-18 97.8 139 41.0
Sabra05G0000100 Salix brachista HOM05D005826 ORTHO05D004357 1.6e-18 97.4 233 36.5
Sabra05G0014200 Salix brachista HOM05D005826 ORTHO05D004357 1.6e-18 97.4 233 36.5
PSO210G7107 Papaver somniferum HOM05D005826 ORTHO05D004357 1.0e-17 94.7 239 36.0
CDE01G0499 Ceratophyllum demersum HOM05D005826 ORTHO05D004357 5.2e-17 92.4 214 35.0
MBI09_g02136_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 7.5e-16 88.6 128 43.0
MELO3C021663.2 Cucumis melo HOM05D005826 ORTHO05D004357 6.3e-15 85.5 50 78.0
PGR083G0870 Punica granatum HOM05D005826 ORTHO05D004357 1.0e-12 78.2 101 45.5
MBI12_g47801_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 2.5e-11 73.6 115 37.4
MELO3C015241.2 Cucumis melo HOM05D005826 ORTHO05D004357 4.2e-11 72.8 46 71.7
MBI06_g28828_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 4.2e-11 72.8 46 71.7
PGSC0003DMG400018243 Solanum tuberosum HOM05D005826 ORTHO05D004357 2.8e-10 70.1 116 50.9
BcaNung03680 Brassica carinata HOM05D005826 ORTHO05D004357 4.7e-10 69.3 180 33.9
BolC7t44686H Brassica oleracea HOM05D005826 ORTHO05D004357 4.7e-10 69.3 180 33.9
C07p41530 Brassica napus HOM05D005826 ORTHO05D004357 8.0e-10 68.6 61 59.0
A06p36960 Brassica napus HOM05D005826 ORTHO05D004357 4.0e-09 66.2 82 56.1
Nitab4.5_0001307g0130 Nicotiana tabacum HOM05D006753 ORTHO05D008521 2.8e-07 60.1 106 38.7
Nitab4.5_0008337g0010 Nicotiana tabacum HOM05D006753 ORTHO05D008521 2.4e-06 57.0 106 38.7
SEGI_04448 Sequoiadendron giganteum HOM05D008111 ORTHO05D010192 3.1e-06 56.6 61 49.2
CBR_g4860 Chara braunii HOM05D006823 ORTHO05D008608 4.1e-06 56.2 67 40.3
ECA247G0541 Erigeron canadensis HOM05D002899 ORTHO05D003850 4.1e-06 56.2 48 52.1
THA.LOC104801042 Tarenaya hassleriana HOM05D005384 ORTHO05D006477 4.1e-06 56.2 52 53.8
Os10g0491900 Oryza sativa ssp. japonica HOM05D006753 ORTHO05D008521 7.0e-06 55.5 48 56.2
Zm00001eb044950 Zea mays HOM05D006753 ORTHO05D008521 9.2e-06 55.1 104 32.7


User provided reference genes

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